Identification of Positively and Negatively Selected Driver Gene Mutations Associated With Colorectal Cancer With Microsatellite Instability

[1]  M. Stratton,et al.  Universal Patterns of Selection in Cancer and Somatic Tissues , 2018, Cell.

[2]  D. Landau,et al.  Cancer Evolution: No Room for Negative Selection , 2017, Cell.

[3]  L. Aaltonen,et al.  Comprehensive Evaluation of Protein Coding Mononucleotide Microsatellites in Microsatellite-Unstable Colorectal Cancer. , 2017, Cancer research.

[4]  P. Park,et al.  A molecular portrait of microsatellite instability across multiple cancers , 2016, Nature Communications.

[5]  O. Demidov,et al.  HSP110 promotes colorectal cancer growth through STAT3 activation , 2017, Oncogene.

[6]  Ming Chen,et al.  Up-Regulation of RFC3 Promotes Triple Negative Breast Cancer Metastasis and is Associated With Poor Prognosis Via EMT , 2016, Translational oncology.

[7]  A. Rodan,et al.  WNK Kinases in Development and Disease. , 2017, Current topics in developmental biology.

[8]  Jay Shendure,et al.  Classification and characterization of microsatellite instability across 18 cancer types , 2016, Nature Medicine.

[9]  A. Duval,et al.  Extracellular HSP110 skews macrophage polarization in colorectal cancer , 2016, Oncoimmunology.

[10]  G. Superti-Furga,et al.  Gene essentiality and synthetic lethality in haploid human cells , 2015, Science.

[11]  Hiroyuki Yamamoto,et al.  Microsatellite instability: an update , 2015, Archives of Toxicology.

[12]  Huan Wang,et al.  Overexpression of RFC3 is correlated with ovarian tumor development and poor prognosis , 2014, Tumor Biology.

[13]  R. Ni,et al.  Increased expression of glycinamide ribonucleotide transformylase is associated with a poor prognosis in hepatocellular carcinoma, and it promotes liver cancer cell proliferation. , 2014, Human pathology.

[14]  Eric Baudin,et al.  Integrated genomic characterization of adrenocortical carcinoma , 2014, Nature Genetics.

[15]  F. Liu,et al.  Glycinamide ribonucleotide formyl transferase is frequently overexpressed in glioma and critically regulates the proliferation of glioma cells. , 2014, Pathology, research and practice.

[16]  Kai Ye,et al.  MSIsensor: microsatellite instability detection using paired tumor-normal sequence data , 2014, Bioinform..

[17]  Á. Rubio,et al.  Identification of alternative splicing events regulated by the oncogenic factor SRSF1 in lung cancer. , 2014, Cancer research.

[18]  C. Tournigand,et al.  Patients with colorectal tumors with microsatellite instability and large deletions in HSP110 T17 have improved response to 5-fluorouracil–based chemotherapy. , 2014, Gastroenterology.

[19]  M. Mlodzik,et al.  WNKs in Wnt/β-catenin signaling , 2013, Cell cycle.

[20]  Christopher D. Manning,et al.  Robust Logistic Regression using Shift Parameters , 2013, ACL.

[21]  Peter J. Park,et al.  The Landscape of Microsatellite Instability in Colorectal and Endometrial Cancer Genomes , 2013, Cell.

[22]  David T. W. Jones,et al.  Signatures of mutational processes in human cancer , 2013, Nature.

[23]  Mira Ayadi,et al.  Gene Expression Classification of Colon Cancer into Molecular Subtypes: Characterization, Validation, and Prognostic Value , 2013, PLoS medicine.

[24]  K. Kinzler,et al.  Cancer Genome Landscapes , 2013, Science.

[25]  C. Tournigand,et al.  Expression of a mutant HSP110 sensitizes colorectal cancer cells to chemotherapy and improves disease prognosis , 2011, Nature Medicine.

[26]  Dimitri P. Bertsekas,et al.  Incremental proximal methods for large scale convex optimization , 2011, Math. Program..

[27]  D. Hanahan,et al.  Hallmarks of Cancer: The Next Generation , 2011, Cell.

[28]  Yan P. Yuan,et al.  SelTarbase, a database of human mononucleotide-microsatellite mutations and their potential impact to tumorigenesis and immunology , 2009, Nucleic Acids Res..

[29]  J. Salk Clonal evolution in cancer , 2010 .

[30]  Brad T. Sherman,et al.  Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists , 2008, Nucleic acids research.

[31]  H. Zouali,et al.  [Clinical and molecular consequences of microsatellite instability in human cancers]. , 2008, Bulletin du cancer.

[32]  E. Friedman,et al.  Multipopulation analysis of polymorphisms in five mononucleotide repeats used to determine the microsatellite instability status of human tumors. , 2006, Journal of clinical oncology : official journal of the American Society of Clinical Oncology.

[33]  A. Sarasin,et al.  Development of New EBV-Based Vectors for Stable Expression of Small Interfering RNA to Mimick Human Syndromes: Application to NER Gene Silencing , 2005, Molecular Cancer Research.

[34]  G. Thomas,et al.  Differential nonsense mediated decay of mutated mRNAs in mismatch repair deficient colorectal cancers. , 2005, Human molecular genetics.

[35]  S. Schwartz,et al.  BRAF mutations characterize colon but not gastric cancer with mismatch repair deficiency , 2003, Oncogene.

[36]  Eric R. Ziegel,et al.  Generalized Linear Models , 2002, Technometrics.

[37]  A. Duval,et al.  Mutations at coding repeat sequences in mismatch repair-deficient human cancers: toward a new concept of target genes for instability. , 2002, Cancer research.

[38]  A. Duval,et al.  Target gene mutation profile differs between gastrointestinal and endometrial tumors with mismatch repair deficiency. , 2002, Cancer research.

[39]  G. Thomas,et al.  Evolution of instability at coding and non-coding repeat sequences in human MSI-H colorectal cancers. , 2001, Human molecular genetics.

[40]  D. Sagher,et al.  Stabilization of the intermediate in frameshift mutation. , 1999, Mutation research.

[41]  S Srivastava,et al.  A National Cancer Institute Workshop on Microsatellite Instability for cancer detection and familial predisposition: development of international criteria for the determination of microsatellite instability in colorectal cancer. , 1998, Cancer research.

[42]  Robin J. Leach,et al.  Mutations of a mutS homolog in hereditary nonpolyposis colorectal cancer , 1993, Cell.

[43]  Darryl Shibata,et al.  Ubiquitous somatic mutations in simple repeated sequences reveal a new mechanism for colonic carcinogenesis , 1993, Nature.

[44]  S N Thibodeau,et al.  Microsatellite instability in cancer of the proximal colon. , 1993, Science.

[45]  D. A. Williams,et al.  Extra‐Binomial Variation in Logistic Linear Models , 1982 .