Analysis of Residual Dependencies of Independent Components Extracted from fMRI Data

Independent component analysis (ICA) of functional magnetic resonance imaging (fMRI) data can be employed as an exploratory method. The lack in the ICA model of strong a priori assumptions about the signal or about the noise leads to difficult interpretations of the results. Moreover, the statistical independence of the components is only approximated. Residual dependencies among the components can reveal informative structure in the data. A major problem is related to model order selection, that is, the number of components to be extracted. Specifically, overestimation may lead to component splitting. In this work, a method based on hierarchical clustering of ICA applied to fMRI datasets is investigated. The clustering algorithm uses a metric based on the mutual information between the ICs. To estimate the similarity measure, a histogram-based technique and one based on kernel density estimation are tested on simulated datasets. Simulations results indicate that the method could be used to cluster components related to the same task and resulting from a splitting process occurring at different model orders. Different performances of the similarity measures were found and discussed. Preliminary results on real data are reported and show that the method can group task related and transiently task related components.

[1]  Waqas Majeed,et al.  Robust Data Driven Model Order Estimation for Independent Component Analysis of fMRI Data with Low Contrast to Noise , 2014, PloS one.

[2]  Helge J. Ritter,et al.  Clustering of Dependent Components: A New Paradigm for fMRI Signal Detection , 2004, 2004 IEEE International Joint Conference on Neural Networks (IEEE Cat. No.04CH37541).

[3]  Karl J. Friston,et al.  Classical and Bayesian Inference in Neuroimaging: Theory , 2002, NeuroImage.

[4]  Alan C. Evans,et al.  BrainWeb: Online Interface to a 3D MRI Simulated Brain Database , 1997 .

[5]  Karl J. Friston,et al.  Statistical parametric maps in functional imaging: A general linear approach , 1994 .

[6]  J. Talairach,et al.  Co-Planar Stereotaxic Atlas of the Human Brain: 3-Dimensional Proportional System: An Approach to Cerebral Imaging , 1988 .

[7]  Mark S. Cohen,et al.  Parametric Analysis of fMRI Data Using Linear Systems Methods , 1997, NeuroImage.

[8]  Mark Von Tress,et al.  Generalized, Linear, and Mixed Models , 2003, Technometrics.

[9]  Vince D. Calhoun,et al.  Performance of blind source separation algorithms for fMRI analysis using a group ICA method. , 2007, Magnetic resonance imaging.

[10]  Xiangyu Long,et al.  Functional segmentation of the brain cortex using high model order group PICA , 2009, Human brain mapping.

[11]  Moon,et al.  Estimation of mutual information using kernel density estimators. , 1995, Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics.

[12]  Carsten O. Daub,et al.  The mutual information: Detecting and evaluating dependencies between variables , 2002, ECCB.

[13]  Vince D. Calhoun,et al.  Capturing inter-subject variability with group independent component analysis of fMRI data: A simulation study , 2012, NeuroImage.

[14]  Aapo Hyvärinen,et al.  Validating the independent components of neuroimaging time series via clustering and visualization , 2004, NeuroImage.

[15]  D. Bamber The area above the ordinal dominance graph and the area below the receiver operating characteristic graph , 1975 .

[16]  S Makeig,et al.  Analysis of fMRI data by blind separation into independent spatial components , 1998, Human brain mapping.

[17]  Tülay Adali,et al.  Estimating the number of independent components for functional magnetic resonance imaging data , 2007, Human brain mapping.

[18]  P. J. Green,et al.  Density Estimation for Statistics and Data Analysis , 1987 .

[19]  J. Pekar,et al.  Erratum: A method for making group inferences from functional mri data using independent component analysis (Human Brain Mapping (2001) 14 (140-151)) , 2002 .

[20]  C. L. Nikias,et al.  Signal processing with higher-order spectra , 1993, IEEE Signal Processing Magazine.

[21]  D. W. Scott,et al.  Multivariate Density Estimation, Theory, Practice and Visualization , 1992 .

[22]  Christian F. Beckmann,et al.  Modelling with independent components , 2012, NeuroImage.

[23]  Rainer Goebel,et al.  Spatial independent component analysis of functional MRI time‐series: To what extent do results depend on the algorithm used? , 2002, Human brain mapping.

[24]  J. H. Ward Hierarchical Grouping to Optimize an Objective Function , 1963 .

[25]  Anil K. Jain,et al.  Data clustering: a review , 1999, CSUR.

[26]  Thomas M. Cover,et al.  Elements of Information Theory , 2005 .

[27]  V M Haughton,et al.  Functional magnetic resonance imaging of somatosensory stimulation. , 1994, Neurosurgery.

[28]  John C. Gore,et al.  ROC Analysis of Statistical Methods Used in Functional MRI: Individual Subjects , 1999, NeuroImage.

[29]  Igor Vajda,et al.  Estimation of the Information by an Adaptive Partitioning of the Observation Space , 1999, IEEE Trans. Inf. Theory.

[30]  Vince D. Calhoun,et al.  A novel approach for assessing reliability of ICA for FMRI analysis , 2014, 2014 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP).

[31]  Michael I. Jordan,et al.  Beyond Independent Components: Trees and Clusters , 2003, J. Mach. Learn. Res..

[32]  C. E. SHANNON,et al.  A mathematical theory of communication , 1948, MOCO.

[33]  T. Sejnowski,et al.  Human Brain Mapping 6:368–372(1998) � Independent Component Analysis of fMRI Data: Examining the Assumptions , 2022 .

[34]  R W Cox,et al.  AFNI: software for analysis and visualization of functional magnetic resonance neuroimages. , 1996, Computers and biomedical research, an international journal.

[35]  Karl J. Friston,et al.  Analysis of fMRI Time-Series Revisited , 1995, NeuroImage.

[36]  Aapo Hyvärinen,et al.  Topographic Independent Component Analysis , 2001, Neural Computation.

[37]  O. Tervonen,et al.  The effect of model order selection in group PICA , 2010, Human brain mapping.

[38]  Vince D. Calhoun,et al.  Automatic Identification of Functional Clusters in fMRI Data Using Spatial Dependence , 2011, IEEE Transactions on Biomedical Engineering.

[39]  Guillaume Marrelec,et al.  Contribution of Exploratory Methods to the Investigation of Extended Large-Scale Brain Networks in Functional MRI: Methodologies, Results, and Challenges , 2008, Int. J. Biomed. Imaging.

[40]  Silvestro Micera,et al.  RELICA: A method for estimating the reliability of independent components , 2014, NeuroImage.

[41]  Nathalie Delfosse,et al.  Adaptive blind separation of independent sources: A deflation approach , 1995, Signal Process..

[42]  E. Oja,et al.  Independent Component Analysis , 2013 .

[43]  J. Pekar,et al.  A method for making group inferences from functional MRI data using independent component analysis , 2001, Human brain mapping.

[44]  Tom Minka,et al.  Automatic Choice of Dimensionality for PCA , 2000, NIPS.

[45]  Stephen M. Smith,et al.  Probabilistic independent component analysis for functional magnetic resonance imaging , 2004, IEEE Transactions on Medical Imaging.

[46]  D. Chakrabarti,et al.  A fast fixed - point algorithm for independent component analysis , 1997 .