Multispecies QSAR modeling for predicting the aquatic toxicity of diverse organic chemicals for regulatory toxicology.

The research aims to develop multispecies quantitative structure-activity relationships (QSARs) modeling tools capable of predicting the acute toxicity of diverse chemicals in various Organization for Economic Co-operation and Development (OECD) recommended test species of different trophic levels for regulatory toxicology. Accordingly, the ensemble learning (EL) approach based classification and regression QSAR models, such as decision treeboost (DTB) and decision tree forest (DTF) implementing stochastic gradient boosting and bagging algorithms were developed using the algae (P. subcapitata) experimental toxicity data for chemicals. The EL-QSAR models were successfully applied to predict toxicities of wide groups of chemicals in other test species including algae (S. obliguue), daphnia, fish, and bacteria. Structural diversity of the selected chemicals and those of the end-point toxicity data of five different test species were tested using the Tanimoto similarity index and Kruskal-Wallis (K-W) statistics. Predictive and generalization abilities of the constructed QSAR models were compared using statistical parameters. The developed QSAR models (DTB and DTF) yielded a considerably high classification accuracy in complete data of model building (algae) species (97.82%, 99.01%) and ranged between 92.50%-94.26% and 92.14%-94.12% in four test species, respectively, whereas regression QSAR models (DTB and DTF) rendered high correlation (R(2)) between the measured and model predicted toxicity end-point values and low mean-squared error in model building (algae) species (0.918, 0.15; 0.905, 0.21) and ranged between 0.575 and 0.672, 0.18-0.51 and 0.605-0.689 and 0.20-0.45 in four different test species. The developed QSAR models exhibited good predictive and generalization abilities in different test species of varied trophic levels and can be used for predicting the toxicities of new chemicals for screening and prioritization of chemicals for regulation.

[1]  Shikha Gupta,et al.  Identifying pollution sources and predicting urban air quality using ensemble learning methods , 2013 .

[2]  Premanjali Rai,et al.  Predicting carcinogenicity of diverse chemicals using probabilistic neural network modeling approaches. , 2013, Toxicology and applied pharmacology.

[3]  Paola Gramatica,et al.  Daphnia and fish toxicity of (benzo)triazoles: validated QSAR models, and interspecies quantitative activity-activity modelling. , 2013, Journal of hazardous materials.

[4]  Zhanchao Li,et al.  The activity against methicillin-resistant Staphylococcus aureus and quantitative structure-activity relationship (QSAR) study ofaza-naphthindolizinedione derivatives , 2013 .

[5]  K. Roy,et al.  Preliminary Studies on Model Development for Rodent Toxicity and Its Interspecies Correlation with Aquatic Toxicities of Pharmaceuticals , 2013, Bulletin of Environmental Contamination and Toxicology.

[6]  Paola Gramatica,et al.  QSAR Modeling is not “Push a Button and Find a Correlation”: A Case Study of Toxicity of (Benzo‐)triazoles on Algae , 2012, Molecular informatics.

[7]  Chun Wei Yap,et al.  Quantitative Nanostructure–Activity Relationship modelling of nanoparticles , 2012 .

[8]  M. Fatemi,et al.  Estimation of the volume of distribution of some pharmacologically important compounds from their structural descriptors , 2011 .

[9]  Jerzy Leszczynski,et al.  Using nano-QSAR to predict the cytotoxicity of metal oxide nanoparticles. , 2011, Nature nanotechnology.

[10]  Kunal Roy,et al.  First report on interspecies quantitative correlation of ecotoxicity of pharmaceuticals. , 2010, Chemosphere.

[11]  Dries Knapen,et al.  Aquatic multi-species acute toxicity of (chlorinated) anilines: experimental versus predicted data. , 2010, Chemosphere.

[12]  Hui Wang,et al.  Residues of veterinary antibiotics in manures from feedlot livestock in eight provinces of China. , 2010, The Science of the total environment.

[13]  Nikita Basant,et al.  Modeling the performance of "up-flow anaerobic sludge blanket" reactor based wastewater treatment plant using linear and nonlinear approaches--a case study. , 2010, Analytica chimica acta.

[14]  Ping Li,et al.  Prediction of the acute toxicity of chemical compounds to the fathead minnow by machine learning approaches , 2010 .

[15]  Udaya B. Kogalur,et al.  Consistency of Random Survival Forests. , 2008, Statistics & probability letters.

[16]  Priyanka Ojha,et al.  Partial least squares and artificial neural networks modeling for predicting chlorophenol removal from aqueous solution , 2009 .

[17]  Ton H. Snelder,et al.  Predictive mapping of the natural flow regimes of France , 2009 .

[18]  Chung‐Yuan Chen,et al.  Toxicity and quantitative structure-activity relationships of benzoic acids to Pseudokirchneriella subcapitata. , 2009, Journal of hazardous materials.

[19]  C. Venkataraman,et al.  Toxicity assessment of organic pollutants: reliability of bioluminescence inhibition assay and univariate QSAR models using freshly prepared Vibrio fischeri. , 2008, Toxicology in vitro : an international journal published in association with BIBRA.

[20]  Amir Etemad-Shahidi,et al.  An alternative approach for the prediction of significant wave heights based on classification and regression trees , 2008 .

[21]  Toxicity and quantitative structure-activity relationships of nitriles based on Pseudokirchneriella subcapitata. , 2007, Ecotoxicology and environmental safety.

[22]  J. Michałowicz,et al.  Phenols - sources and toxicity , 2007 .

[23]  K. Urano,et al.  A new method for evaluating biological safety of environmental water with algae, daphnia and fish toxicity ranks. , 2006, The Science of the total environment.

[24]  X. Y. Zhang,et al.  Application of support vector machine (SVM) for prediction toxic activity of different data sets. , 2006, Toxicology.

[25]  Jui-Ho Lin,et al.  Toxicity of chlorophenols to Pseudokirchneriella subcapitata under air-tight test environment. , 2006, Chemosphere.

[26]  Nina Nikolova-Jeliazkova,et al.  An Approach to Determining Applicability Domains for QSAR Group Contribution Models: An Analysis of SRC KOWWIN , 2005, Alternatives to laboratory animals : ATLA.

[27]  Philip Howard,et al.  Practical considerations on the use of predictive models for regulatory purposes. , 2005, Environmental science & technology.

[28]  Feng Luan,et al.  Classification of the carcinogenicity of N-nitroso compounds based on support vector machines and linear discriminant analysis. , 2005, Chemical research in toxicology.

[29]  J. Dearden,et al.  QSARs for toxicity to the bacterium Sinorhizobium meliloti , 2004, SAR and QSAR in environmental research.

[30]  P. Frymier,et al.  Estimating the toxicities of organic chemicals to bioluminescent bacteria and activated sludge. , 2002, Water research.

[31]  Interspecies sensitivity in the aquatic toxicity of aromatic amines. , 2002, Environmental toxicology and pharmacology.

[32]  J. Friedman Stochastic gradient boosting , 2002 .

[33]  Cheng Sun,et al.  Quantitative structure-activity relationships for the inhibition toxicity to root elongation of Cucumis sativus of selected phenols and interspecies correlation with Tetrahymena pyriformis. , 2002, Chemosphere.

[34]  J. Friedman Greedy function approximation: A gradient boosting machine. , 2001 .

[35]  Y. H. Zhao,et al.  QSAR study on the toxicity of substituted benzenes to the algae (Scenedesmus obliquus). , 2001, Chemosphere.

[36]  Rolf Altenburger,et al.  Quantitative structure-activity analysis of the algae toxicity of nitroaromatic compounds. , 2000, Chemical research in toxicology.

[37]  Nagamany Nirmalakhandan,et al.  Use of QSAR models in predicting joint effects in multi-component mixtures of organic chemicals , 1998 .

[38]  Mark T. D. Cronin,et al.  Quantitative Structure-Activity Relationships of Chemicals Acting by Non-polar Narcosis—Theoretical Considerations , 1998 .

[39]  K. Kaiser,et al.  Correlations of Vibrio fischeri bacteria test data with bioassay data for other organisms. , 1998, Environmental health perspectives.

[40]  N. Nirmalakhandan,et al.  Toxicity of binary mixtures of organic chemicals to microorganisms , 1996 .

[41]  P. Jurs,et al.  Development and use of charged partial surface area structural descriptors in computer-assisted quantitative structure-property relationship studies , 1990 .

[42]  W. R. Lieb,et al.  Mechanisms of general anesthesia. , 1990, Environmental health perspectives.