Hierarchical metacommunity structure of fungal endophytes.

The ecological and evolutionary processes shaping community structure and functions of microbial symbionts are known to be scale-dependent. Nonetheless, understanding how the relative importance of these processes changes across spatial scales, and deciphering the hierarchical metacommunity structure of fungal endophytes has proven challenging. We investigated metacommunities of endophytic fungi within leaves of an invasive plant (Alternanthera philoxeroides) across wide latitudinal transects both in its native (Argentina) and introduced (China) ranges to test whether metacommunities of fungal endophytes were structured by different drivers at different spatial scales. We found Clementsian structures with seven discrete compartments (distinctive groups of fungal species with coincident distribution ranges), which coincided with the distribution of major watersheds. Metacommunity compartments were explicitly demarcated at three spatial scales, that is, the between-continent, between-compartment, and within-compartment scales. At larger spatial scales, local environmental conditions (climate, soil, and host plant traits) were replaced by other geographical factors as principal determinants of metacommunity structure of fungal endophytes and community diversity-function relationships. Our results reveal novel insights into the scale dependency of diversity and functions of fungal endophytes, which are likely similar for plant symbionts. These findings can potentially improve our understanding of the global patterns of fungal diversity.

[1]  E. Zvereva,et al.  Latitudinal gradient in the intensity of biotic interactions in terrestrial ecosystems: Sources of variation and differences from the diversity gradient revealed by meta-analysis. , 2021, Ecology letters.

[2]  A. Arnold,et al.  Drivers and implications of distance decay differ for ectomycorrhizal and foliar endophytic fungi across an anciently fragmented landscape , 2021, The ISME Journal.

[3]  Erik F. Y. Hom,et al.  Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale , 2021, Communications biology.

[4]  Martti Vasar,et al.  FungalTraits: a user-friendly traits database of fungi and fungus-like stramenopiles , 2020, Fungal Diversity.

[5]  Andrew M. Liebhold,et al.  Scientists' warning on invasive alien species , 2020, Biological reviews of the Cambridge Philosophical Society.

[6]  A. Lavrinienko,et al.  Does Intraspecific Variation in rDNA Copy Number Affect Analysis of Microbial Communities? , 2020, Trends in microbiology.

[7]  A. Howe,et al.  A meta-analysis of global fungal distribution reveals climate-driven patterns , 2019, Nature Communications.

[8]  G. May,et al.  Host availability drives distributions of fungal endophytes in the imperilled boreal realm , 2019, Nature Ecology & Evolution.

[9]  William A. Walters,et al.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 , 2019, Nature Biotechnology.

[10]  B. Bohannan,et al.  Microbiomes as Metacommunities: Understanding Host-Associated Microbes through Metacommunity Ecology. , 2018, Trends in ecology & evolution.

[11]  J. Lenoir,et al.  Incorporating microclimate into species distribution models , 2018, Ecography.

[12]  H. Reynolds,et al.  Foliar fungal endophyte communities are structured by environment but not host ecotype in Panicum virgatum (switchgrass). , 2018, Ecology.

[13]  R. Henrik Nilsson,et al.  The UNITE database for molecular identification of fungi: handling dark taxa and parallel taxonomic classifications , 2018, Nucleic Acids Res..

[14]  Anders F. Andersson,et al.  Multiscale patterns and drivers of arbuscular mycorrhizal fungal communities in the roots and root‐associated soil of a wild perennial herb , 2018, The New phytologist.

[15]  Benjamin D. Kaehler,et al.  Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin , 2018, Microbiome.

[16]  Stephen E. Fick,et al.  WorldClim 2: new 1‐km spatial resolution climate surfaces for global land areas , 2017 .

[17]  Benjamin Gilbert,et al.  Experimental dispersal reveals characteristic scales of biodiversity in a natural landscape , 2017, Proceedings of the National Academy of Sciences.

[18]  Paul J. McMurdie,et al.  Exact sequence variants should replace operational taxonomic units in marker-gene data analysis , 2017, The ISME Journal.

[19]  Leho Tedersoo,et al.  Fungal identification biases in microbiome projects. , 2016, Environmental microbiology reports.

[20]  K. Peay,et al.  Dimensions of biodiversity in the Earth mycobiome , 2016, Nature Reviews Microbiology.

[21]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[22]  Scott T. Bates,et al.  FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild , 2016 .

[23]  C. Bacon,et al.  Functions, mechanisms and regulation of endophytic and epiphytic microbial communities of plants , 2016, Symbiosis.

[24]  M. Zobel,et al.  Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism , 2015, Science.

[25]  S. Harrison,et al.  What Are Species Pools and When Are They Important , 2014 .

[26]  Pieter T. J. Johnson,et al.  Evaluating the role of regional and local processes in structuring a larval trematode metacommunity of Helisoma trivolvis , 2013 .

[27]  T. Fukami,et al.  Rat invasion of islands alters fungal community structure, but not wood decomposition rates , 2013 .

[28]  Peter M. Vitousek,et al.  Fungal endophyte communities reflect environmental structuring across a Hawaiian landscape , 2012, Proceedings of the National Academy of Sciences.

[29]  Joseph R. Mihaljevic,et al.  Linking metacommunity theory and symbiont evolutionary ecology. , 2012, Trends in ecology & evolution.

[30]  P. Legendre,et al.  Variation partitioning involving orthogonal spatial eigenfunction submodels. , 2012, Ecology.

[31]  S. Stark,et al.  Microbially Mediated Plant Functional Traits , 2011 .

[32]  Steven J. Presley,et al.  A comprehensive framework for the evaluation of metacommunity structure , 2010 .

[33]  A. Arnold,et al.  Fungal endophytes: diversity and functional roles. , 2009, The New phytologist.

[34]  P. Legendre,et al.  Forward selection of explanatory variables. , 2008, Ecology.

[35]  Li Bo,et al.  Invasive Alternanthera philoxeroides: biology, ecology and management , 2007 .

[36]  F. Lutzoni,et al.  Diversity and host range of foliar fungal endophytes: are tropical leaves biodiversity hotspots? , 2007, Ecology.

[37]  C. Rahbek The role of spatial scale and the perception of large‐scale species‐richness patterns , 2004 .

[38]  Hanna Tuomisto,et al.  DISSECTING THE SPATIAL STRUCTURE OF ECOLOGICAL DATA AT MULTIPLE SCALES , 2004 .

[39]  Jonathan M. Chase,et al.  The metacommunity concept: a framework for multi-scale community ecology , 2004 .

[40]  D. Tilman,et al.  Fungal endophytes limit pathogen damage in a tropical tree , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[41]  Dawn M. Kaufman,et al.  LATITUDINAL GRADIENTS OF BIODIVERSITY:Pattern,Process,Scale,and Synthesis , 2003 .

[42]  Mathew A. Leibold,et al.  Coherence, species turnover, and boundary clumping: Elements of meta-community structure , 2002 .

[43]  F. Chapin,et al.  Consequences of changing biodiversity , 2000, Nature.

[44]  J. Holah,et al.  Fungal endophyte symbiosis and plant diversity in successional fields , 1999, Science.

[45]  M. R. Carter,et al.  Soil Sampling and Methods of Analysis , 1993 .

[46]  S. Levin The problem of pattern and scale in ecology , 1992 .

[47]  P. Legendre,et al.  Partialling out the spatial component of ecological variation , 1992 .

[48]  R. Tibshirani,et al.  Estimating the number of clusters in a data set via the gap statistic , 2000 .