A new coupled, one-dimensional biological-physical model for the upper ocean: Applications to the JGOFS Bermuda Atlantic Time-series Study (BATS) site

Abstract This paper presents a new coupled, one dimensional biological-physical model applied to the subtropical region near Bermuda. The physical component of the model, which is driven by smooth climatological forcing, successfully reproduces the long-term seasonal cycles of upper ocean temperature, salinity and boundary layer depth from Hydrostation S. The nitrogen-based biological model, which includes the effects of photoadaptation, phytoplankton aggregation, and particle remineralization in the aphotic zone, shows significant skill in capturing the major features of the annual chlorophyll field (e.g. spring bloom, deep chlorophyll maximum) and depth-integrated chlorophyll and primary production as exhibited by the U.S. JGOFS Bermuda Atlantic Time-series Study (BATS) data. The introduction of variable phytoplankton chlorophyll-to-nitrogen ratios is found to be important for simulating the subsurface chlorophyll maximum, and the model solutions show a realistic deep nitracline in the summer and a low annual average f -ratio of ∼0.21 compared to previous modeling work. The performance of the model solutions are weakest during the late summer, when the model can not supply enough nutrients to support the high production observed in the stratified near-surface waters. The coupled model has large winter production values, leading to a substantial export of organic material from the euphotic zone via downward turbulent mixing. The model predicts a total export production from the euphotic zone of 0.24 mol N m −2 year −1 , approximately equally partitioned between particle sinking and suspended matter detrainment. The bulk of the export production is remineralized in the shallow aphotic zone, and only a small fraction is transported below the depth of the maximum winter mixed layer and thus contributes to “biological pump”.

[1]  G. Evans,et al.  Towards a model of ocean biogeochemical processes , 1993 .

[2]  B. Frost,et al.  Grazing control of phytoplankton stock in the open subarctic Pacific Ocean: a model assessing the role of mesozooplankton, particularly the large calanoid copepods Neocalanus spp. , 1987 .

[3]  T. Dickey,et al.  Modeling phytoplankton dynamics in the northeast Atlantic during the initiation of the spring bloom , 1994 .

[4]  M. Altabet Particulate new nitrogen fluxes in the Sargasso Sea , 1989 .

[5]  J. Sarmiento,et al.  Ecosystem behavior at Bermuda Station “S” and ocean weather station “India”: A general circulation model and observational analysis , 1993 .

[6]  H. Ducklow,et al.  Production and Fate of Bacteria in the Oceans , 1983 .

[7]  J. Toggweiler Ocanography-Carbon overconsumption , 1993 .

[8]  J. Steele,et al.  The role of predation in plankton models , 1992 .

[9]  Farooq Azam,et al.  Major role of bacteria in biogeochemical fluxes in the ocean's interior , 1988, Nature.

[10]  Glenn R. Flierl,et al.  An Ocean Basin Scale Model of plankton dynamics in the North Atlantic: 1. Solutions For the climatological oceanographic conditions in May , 1988 .

[11]  M. Silver,et al.  The “particle” flux: Origins and biological components , 1991 .

[12]  P. Nival,et al.  A pelagic ecosystem model simulating production and sedimentation of biogenic particles: role of salps and copepods , 1988 .

[13]  Colin S. Reynolds,et al.  The ecology of freshwater phytoplankton , 1984 .

[14]  J. Raven,et al.  Towards a General Description of Phytoplankton Growth for Biogeochemical Models , 1993 .

[15]  M. Huntley,et al.  General Rules of Grazing in Pelagic Ecosystems , 1980 .

[16]  D. Karl,et al.  Downward flux of particulate organic matter in the ocean: a particle decomposition paradox , 1988, Nature.

[17]  A. Knap,et al.  Significance of atmospheric-derived fixed nitrogen on productivity of the Sargasso Sea , 1986, Nature.

[18]  Robert R. Bidigare,et al.  Seasonal patterns of ocean biogeochemistry at the U.S. JGOFS Bermuda Atlantic time-series study site , 1994 .

[19]  W. Large,et al.  Upper Ocean Thermal Response to Strong Autumnal Forcing of the Northeast Pacific , 1986 .

[20]  Richard J. Geider,et al.  LIGHT AND TEMPERATURE DEPENDENCE OF THE CARBON TO CHLOROPHYLL a RATIO IN MICROALGAE AND CYANOBACTERIA: IMPLICATIONS FOR PHYSIOLOGY AND GROWTH OF PHYTOPLANKTON , 1987 .

[21]  B. Peterson,et al.  Particulate organic matter flux and planktonic new production in the deep ocean , 1979, Nature.

[22]  R. Eppley,et al.  Biological nitrogen cycling in the nitracline , 1989 .

[23]  J. Cullen On models of growth and photosynthesis in phytoplankton , 1990 .

[24]  W. Jenkins,et al.  Application of a model of upper‐ocean physics for studying seasonal cycles of oxygen , 1988 .

[25]  K. Banse New views on the degradation and disposition of organic particles as collected by sediment traps in the open sea , 1990 .

[26]  A. Morel Optical modeling of the upper ocean in relation to its biogenous matter content (case I waters) , 1988 .

[27]  B. Mitchell,et al.  Light limitation of phytoplankton biomass and macronutrient utilization in the Southern Ocean , 1991 .

[28]  J. Ryther,et al.  The annual cycle of primary production in the Sargasso Sea off Bermuda , 1959 .

[29]  J. Wroblewski A model of the spring bloom in the North Atlantic and its impact on ocean optics , 1989 .

[30]  W. Richard,et al.  TEMPERATURE AND PHYTOPLANKTON GROWTH IN THE SEA , 1972 .

[31]  H. Ducklow,et al.  Annual flux of dissolved organic carbon from the euphotic zone in the northwestern Sargasso Sea , 1994, Nature.

[32]  W. Spitzer Rates of vertical mixing, gas exchange, and new production : estimates from seasonal gas cycles in the upper ocean near Bermuda , 1989 .

[33]  B. Irwin,et al.  NFLUX: a test of vertical nitrogen flux by diel migrant biota , 1989 .

[34]  M. Altabet,et al.  Nitrogen transport by vertically migrating diatom mats in the North Pacific Ocean , 1993, Nature.

[35]  Karen S. Baker,et al.  Bio-optical classification and model of natural waters. 21 , 1982 .

[36]  M. Gregg,et al.  Diapycnal mixing in the thermocline: A review , 1987 .

[37]  Paul G. Falkowski,et al.  Primary Productivity and Biogeochemical Cycles in the Sea , 1992 .

[38]  Scott C. Doney,et al.  Photochemistry, mixing and diurnal cycles in the upper ocean , 1995 .

[39]  E. Laws,et al.  Nutrient‐ and light‐limited growth of Thalassiosira fluviatilis in continuous culture, with implications for phytoplankton growth in the ocean , 1980 .

[40]  M. Gregg,et al.  Signatures of Mixing from the Bermuda Slope, the Sargasso Sea and the Gulf Stream , 1980 .

[41]  Alice L. Alldredge,et al.  Characteristics, dynamics and significance of marine snow , 1988 .

[42]  J. Napp,et al.  Zooplankton biomass and grazing at the JGOFS Sargasso Sea time series station , 1993 .

[43]  A. Vézina,et al.  Biological Production of the Oceans - the Case for a Consensus , 1989 .

[44]  M. Silver,et al.  Primary production, sinking fluxes and the microbial food web , 1988 .

[45]  R. Deszoeke,et al.  Heat and Energy Balances in the Upper Ocean at 50°N, 140°W during November 1980 (STREX) , 1986 .

[46]  A. Leetmaa,et al.  Updated charts of the mean annual wind stress, convergences in the Ekman layers, and Sverdrup transports in the North Atlantic , 1978 .

[47]  K. Buesseler Do upper-ocean sediment traps provide an accurate record of particle flux? , 1991, Nature.

[48]  C. Carlson,et al.  Carbon-cycle imbalances in the Sargasso Sea , 1994, Nature.

[49]  Andrew J. Watson,et al.  Evidence for slow mixing across the pycnocline from an open-ocean tracer-release experiment , 1993, Nature.

[50]  F. Dobson,et al.  Bulk models of solar radiation at sea , 1988 .

[51]  K. Baker,et al.  Relation between photosynthetically available radiation and total insolation at the ocean surface under clear skies1 , 1987 .

[52]  D. Kiefer,et al.  A steady state description ofgrowth and light absorption in the marine planktonic diatom Skeletonema costatum , 1989 .

[53]  R. Weller,et al.  Wind-Driven Ocean Currents and Ekman Transport , 1987, Science.

[54]  T. Platt,et al.  Nutrient control of phytoplankton photosynthesis in the Western North Atlantic , 1992, Nature.

[55]  M. Gosselin,et al.  New production and export of organic matter to the deep ocean: consequences of some recent discoveries , 1989 .

[56]  Glenn R. Flierl,et al.  Behavior of a simple plankton model with food-level acclimation by herbivores , 1986 .

[57]  A. Knap,et al.  A three dimensional time‐dependent approach to calibrating sediment trap fluxes , 1994 .

[58]  P. Boyd,et al.  Elevated consumption of carbon relative to nitrogen in the surface ocean , 1993, Nature.

[59]  F. Muller‐Karger,et al.  The effects of temporal variability of mixed layer depth on primary productivity around Bermuda , 1994 .

[60]  J. Goering,et al.  UPTAKE OF NEW AND REGENERATED FORMS OF NITROGEN IN PRIMARY PRODUCTIVITY1 , 1967 .

[61]  J. McWilliams On the mean dynamical balances of the Gulf Stream recirculation zone , 1983 .

[62]  Peter A. Jumars,et al.  Concepts in Biological Oceanography: An Interdisciplinary Primer , 1993 .

[63]  G. Hurtt,et al.  A pelagic ecosystem model calibrated with BATS data , 1996 .

[64]  W. Jenkins,et al.  Nitrate flux into the euphotic zone near Bermuda , 1988, Nature.

[65]  W. J. Jenkins,et al.  Seasonal oxygen cycling and primary production in the Sargasso Sea , 1985 .

[66]  Stuart G. Wakeham,et al.  Organic geochemistry of particulate matter in the eastern tropical North Pacific Ocean: Implications for particle dynamics , 1988 .

[67]  J. C. Goldman,et al.  Spatial and Temporal Discontinuities of Biological Processes in Pelagic Surface Waters , 1988 .

[68]  W. Large,et al.  Observations and Simulations of Upper-Ocean Response to Wind Events during the Ocean Storms Experiment , 1995 .

[69]  D. Conley,et al.  Transient variations in phytoplankton productivity at the JGOFS Bermuda time series station , 1993 .

[70]  M. Fasham Variations in the seasonal cycle of biological production in subarctic oceans: A model sensitivity analysis , 1995 .

[71]  W. J. Jenkins,et al.  Oxygen utilization rates in North Atlantic subtropical gyre and primary production in oligotrophic systems , 1982, Nature.

[72]  A. Knap,et al.  Seasonal variability in primary production and particle flux in the northwestern Sargasso Sea: U.S. JGOFS Bermuda Atlantic time-series study , 1992 .

[73]  A. Alldredge,et al.  The physical strength of marine snow and its implications for particle disaggregation in the ocean , 1990 .

[74]  P. Falkowski Primary productivity in the sea , 1980 .

[75]  H. Ducklow,et al.  A nitrogen-based model of plankton dynamics in the oceanic mixed layer , 1990 .

[76]  J. Toggweiler,et al.  Downward transport and fate of organic matter in the ocean: Simulations with a general circulation model , 1992 .

[77]  K. Mann,et al.  Dynamics of marine ecosystems:biological-physical interactions in the oceans , 1992 .

[78]  Dale A. Kiefer,et al.  A simple, steady state description of phytoplankton growth based on absorption cross section and quantum efficiency1 , 1983 .

[79]  D. Kiefer Modelling Growth and Light Absorption in the Marine Diatom Skeletonema Costatum , 1993 .

[80]  C. Paulson,et al.  Irradiance Measurements in the Upper Ocean , 1977 .

[81]  R. Bidigare,et al.  Nutrients and mixing, chlorophyll and phytoplankton growth , 1990 .

[82]  K. Baker,et al.  Meridional variations of the springtime phytoplankton community in the Sargasso Sea , 1990 .

[83]  K. Bencala,et al.  Phytoplankton productivity in relation to light intensity: A simple equation , 1987 .

[84]  T. Platt,et al.  Vertical Nitrate Fluxes in the Oligotrophic Ocean , 1986, Science.

[85]  A. Knap,et al.  The significance of short term wind induced mixing events for new primary production in sub-tropical gyres , 1989 .

[86]  J. Ryther,et al.  Annual variations in primary production of the Sargasso sea off Bermuda , 1961 .

[87]  David M. Karl,et al.  VERTEX: carbon cycling in the northeast Pacific , 1987 .

[88]  J. Kremer,et al.  Origins of vertical patterns of phytoplankton and nutrients in the temperate, open ocean: a stratigraphic hypothesis , 1981 .

[89]  W. Large,et al.  Oceanic vertical mixing: a review and a model with a nonlocal boundary layer parameterization , 1994 .

[90]  M. Bender,et al.  Tracers in the Sea , 1984 .

[91]  J. Toggweiler,et al.  A seasonal three‐dimensional ecosystem model of nitrogen cycling in the North Atlantic Euphotic Zone , 1993 .