The axolotl genome and the evolution of key tissue formation regulators

[1]  Colin N. Dewey,et al.  Analysis of embryonic development in the unsequenced axolotl: Waves of transcriptomic upheaval and stability. , 2017, Developmental biology.

[2]  Timothy L. Tickle,et al.  A Tissue-Mapped Axolotl De Novo Transcriptome Enables Identification of Limb Regeneration Factors. , 2017, Cell reports.

[3]  S. Salzberg,et al.  An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing , 2017, GigaScience.

[4]  Maritta Schuez,et al.  Live Imaging of Axolotl Digit Regeneration Reveals Spatiotemporal Choreography of Diverse Connective Tissue Progenitor Pools , 2016, Developmental cell.

[5]  B. King,et al.  A Conserved MicroRNA Regulatory Circuit Is Differentially Controlled during Limb/Appendage Regeneration , 2016, PloS one.

[6]  E. Tanaka.  The Molecular and Cellular Choreography of Appendage Regeneration , 2016, Cell.

[7]  J. von Hofsten,et al.  Pax7 is required for establishment of the xanthophore lineage in zebrafish embryos , 2016, Molecular biology of the cell.

[8]  R. Barsacchi,et al.  MARCKS-Like Protein is an Initiating Molecule in Axolotl Appendage Regeneration , 2016, Nature.

[9]  S. Voss,et al.  Initial characterization of the large genome of the salamander Ambystoma mexicanum using shotgun and laser capture chromosome sequencing , 2015, Scientific Reports.

[10]  Anoop Kumar,et al.  An orphan gene is necessary for preaxial digit formation during salamander limb development , 2015, Nature Communications.

[11]  Steven J. M. Jones,et al.  Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism. , 2015, The Plant journal : for cell and molecular biology.

[12]  Jun Wang,et al.  Whole-genome sequence of the Tibetan frog Nanorana parkeri and the comparative evolution of tetrapod genomes , 2015, Proceedings of the National Academy of Sciences.

[13]  R. Mueller,et al.  Hellbender Genome Sequences Shed Light on Genomic Expansion at the Base of Crown Salamanders , 2014, Genome biology and evolution.

[14]  A. Meyer,et al.  Evolution of the Vertebrate Pax4/6 Class of Genes with Focus on Its Novel Member, the Pax10 Gene , 2014, Genome biology and evolution.

[15]  E. Tanaka,et al.  Progressive Specification Rather than Intercalation of Segments During Limb Regeneration , 2013, Science.

[16]  C. Barbas,et al.  ZFN, TALEN, and CRISPR/Cas-based methods for genome engineering. , 2013, Trends in biotechnology.

[17]  Cynthia Alexander Rascón,et al.  Comparative Transcriptional Profiling of the Axolotl Limb Identifies a Tripartite Regeneration-Specific Gene Program , 2013, PloS one.

[18]  S. Voss,et al.  Salamander Hox clusters contain repetitive DNA and expanded non-coding regions: a typical Hox structure for non-mammalian tetrapod vertebrates? , 2013, Human Genomics.

[19]  Colin N. Dewey,et al.  Comparative RNA-seq Analysis in the Unsequenced Axolotl: The Oncogene Burst Highlights Early Gene Expression in the Blastema , 2013, PLoS Comput. Biol..

[20]  R. Mueller,et al.  LTR Retrotransposons Contribute to Genomic Gigantism in Plethodontid Salamanders , 2011, Genome biology and evolution.

[21]  José M. Sempere,et al.  The Gypsy Database (GyDB) of mobile genetic elements: release 2.0 , 2010, Nucleic Acids Res..

[22]  S. Odelberg,et al.  A transitional extracellular matrix instructs cell behavior during muscle regeneration. , 2010, Developmental biology.

[23]  J. Brockes,et al.  Evidence for the local evolution of mechanisms underlying limb regeneration in salamanders. , 2010, Integrative and comparative biology.

[24]  Li Li,et al.  Distinct enhancers at the Pax3 locus can function redundantly to regulate neural tube and neural crest expressions. , 2010, Developmental biology.

[25]  Wei Zhu,et al.  Genic regions of a large salamander genome contain long introns and novel genes , 2009, BMC Genomics.

[26]  Keith Bradnam,et al.  CEGMA: a pipeline to accurately annotate core genes in eukaryotic genomes , 2007, Bioinform..

[27]  M. Rudnicki,et al.  Distinct roles for Pax7 and Pax3 in adult regenerative myogenesis , 2006, The Journal of cell biology.

[28]  D. Haussler,et al.  Ultraconserved Elements in the Human Genome , 2004, Science.

[29]  Ahmed Mansouri,et al.  Divergent functions of murine Pax3 and Pax7 in limb muscle development. , 2004, Genes & development.

[30]  J. Epstein,et al.  Identification of minimal enhancer elements sufficient for Pax3 expression in neural crest and implication of Tead2 as a regulator of Pax3 , 2004, Development.

[31]  P. B. Gates,et al.  The newt ortholog of CD59 is implicated in proximodistal identity during amphibian limb regeneration. , 2002, Developmental cell.

[32]  P Gruss,et al.  Pax genes and their roles in cell differentiation and development. , 1996, Current opinion in cell biology.

[33]  P. Gruss,et al.  Dysgenesis of cephalic neural crest derivatives in Pax7-/- mutant mice. , 1996, Development.

[34]  R. Tassava,et al.  Extracellular matrix protein turnover during salamander limb regeneration , 1996, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society.

[35]  M. Capecchi,et al.  Absence of radius and ulna in mice lacking hoxa-11 andhoxd-11 , 1995, Nature.

[36]  R. Auerbach.  Analysis of the developmental effects of a lethal mutation in the house mouse , 1954 .