Insights from Systems Biology in Physiological Studies: Learning from Context
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[1] Uri Alon,et al. Dynamic proteomics reveals bimodal protein dynamics of cancer cells in response to HSP90 inhibitor , 2017, BMC Systems Biology.
[2] T. Santa-Coloma,et al. The Chloride Anion Acts as a Second Messenger in Mammalian Cells - Modifying the Expression of Specific Genes , 2016, Cellular Physiology and Biochemistry.
[3] Davide Heller,et al. eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences , 2015, Nucleic Acids Res..
[4] A. Barabasi,et al. Uncovering disease-disease relationships through the incomplete interactome , 2015, Science.
[5] R. Kolodner,et al. S-Score: A Scoring System for the Identification and Prioritization of Predicted Cancer Genes , 2014, PloS one.
[6] R. Milo,et al. Noise Genetics: Inferring Protein Function by Correlating Phenotype with Protein Levels and Localization in Individual Human Cells , 2014, PLoS genetics.
[7] V. Babich,et al. The biophysical and molecular basis of intracellular pH sensing by Na+/H+ exchanger‐3 , 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.
[8] Jason A. Corwin,et al. Cytoplasmic genetic variation and extensive cytonuclear interactions influence natural variation in the metabolome , 2013, eLife.
[9] Chris Sander,et al. Drug Synergy Screen and Network Modeling in Dedifferentiated Liposarcoma Identifies CDK4 and IGF1R as Synergistic Drug Targets , 2013, Science Signaling.
[10] Tong Wang,et al. Proximal tubule specific knockout of the Na+/H+ exchanger NHE3: effects on bicarbonate absorption and ammonium excretion , 2013, Journal of Molecular Medicine.
[11] A. Girardi,et al. Fructose Acutely Stimulates NHE3 Activity in Kidney Proximal Tubule , 2012, Kidney and Blood Pressure Research.
[12] Edson L. Folador,et al. Computational Prediction of Protein-Protein Interactions in Leishmania Predicted Proteomes , 2012, PloS one.
[13] O. Moe,et al. Proximal tubule Na+/H+ exchanger activity in adult NHE8-/-, NHE3-/-, and NHE3-/-/NHE8-/- mice. , 2012, American journal of physiology. Renal physiology.
[14] M. Jarvelin,et al. Identification of IL6R and chromosome 11q13.5 as risk loci for asthma , 2011, The Lancet.
[15] G. Fuellen,et al. Derivation of an Interaction/regulation Network Describing Pluripotency in Human , 2022 .
[16] Baldomero Oliva,et al. BIPS: BIANA Interolog Prediction Server. A tool for protein–protein interaction inference , 2012, Nucleic Acids Res..
[17] P. Braun. Interactome mapping for analysis of complex phenotypes: Insights from benchmarking binary interaction assays , 2012, Proteomics.
[18] A. Girardi,et al. Distinct mechanisms underlie adaptation of proximal tubule Na+/H+ exchanger isoform 3 in response to chronic metabolic and respiratory acidosis , 2012, Pflügers Archiv - European Journal of Physiology.
[19] R. Cole,et al. Calmodulin Kinase II Constitutively Binds, Phosphorylates, and Inhibits Brush Border Na+/H+ Exchanger 3 (NHE3) by a NHERF2 Protein-dependent Process* , 2012, The Journal of Biological Chemistry.
[20] George F R Ellis,et al. Top-down causation and emergence: some comments on mechanisms , 2012, Interface Focus.
[21] P. Visscher,et al. Five years of GWAS discovery. , 2012, American journal of human genetics.
[22] H. Kitano,et al. Software for systems biology: from tools to integrated platforms , 2011, Nature Reviews Genetics.
[23] Avi Ma’ayan. Introduction to Network Analysis in Systems Biology , 2011, Science Signaling.
[24] Manuel A. R. Ferreira,et al. Identification of IL6R and chromosome 11q13.5 as risk loci for asthma , 2011, The Lancet.
[25] Jonathan D. G. Jones,et al. Evidence for Network Evolution in an Arabidopsis Interactome Map , 2011, Science.
[26] E. Marcotte,et al. Prioritizing candidate disease genes by network-based boosting of genome-wide association data. , 2011, Genome research.
[27] N. Rebouças,et al. Essential regulatory elements for NHE3 gene transcription in renal proximal tubule cells. , 2011, Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologicas.
[28] Leszek P. Pryszcz,et al. MetaPhOrs: orthology and paralogy predictions from multiple phylogenetic evidence using a consistency-based confidence score , 2010, Nucleic acids research.
[29] Erika Check Hayden,et al. Human genome at ten: Life is complicated , 2010, Nature.
[30] Gary D Bader,et al. The Genetic Landscape of a Cell , 2010, Science.
[31] Kwang-Hyun Cho,et al. Hub genes with positive feedbacks function as master switches in developmental gene regulatory networks , 2009, Bioinform..
[32] E. Stone,et al. Systems Genetics of Complex Traits in Drosophila melanogaster , 2009, Nature Genetics.
[33] C. Yun,et al. IRBIT, Inositol 1,4,5-Triphosphate (IP3) Receptor-binding Protein Released with IP3, Binds Na+/H+ Exchanger NHE3 and Activates NHE3 Activity in Response to Calcium* , 2008, Journal of Biological Chemistry.
[34] A. Barabasi,et al. High-Quality Binary Protein Interaction Map of the Yeast Interactome Network , 2008, Science.
[35] A. Pandey,et al. Casein kinase 2 binds to the C terminus of Na+/H+ exchanger 3 (NHE3) and stimulates NHE3 basal activity by phosphorylating a separate site in NHE3. , 2008, Molecular biology of the cell.
[36] Dragomir R. Radev,et al. Identifying gene-disease associations using centrality on a literature mined gene-interaction network , 2008, ISMB.
[37] David Warde-Farley,et al. GeneMANIA: a real-time multiple association network integration algorithm for predicting gene function , 2008, Genome Biology.
[38] A. Bicknell. The Tissue‐Specific Processing of Pro‐Opiomelanocortin , 2008, Journal of neuroendocrinology.
[39] David S Sanders,et al. Newly identified genetic risk variants for celiac disease related to the immune response , 2008, Nature Genetics.
[40] Fidel Ramírez,et al. Computing topological parameters of biological networks , 2008, Bioinform..
[41] G. Wagner,et al. The road to modularity , 2007, Nature Reviews Genetics.
[42] U. Alon. Network motifs: theory and experimental approaches , 2007, Nature Reviews Genetics.
[43] A. Barabasi,et al. The human disease network , 2007, Proceedings of the National Academy of Sciences.
[44] Jinn-Moon Yang,et al. 3D-partner: a web server to infer interacting partners and binding models , 2007, Nucleic Acids Res..
[45] Qiong Gao,et al. Resources for integrative systems biology: from data through databases to networks and dynamic system models , 2006, Briefings Bioinform..
[46] Hunter B. Fraser,et al. Coevolution, modularity and human disease. , 2006, Current opinion in genetics & development.
[47] Martin G. Everett,et al. A Graph-theoretic perspective on centrality , 2006, Soc. Networks.
[48] M. Radrizzani,et al. Relative contribution of V‐H+ATPase and NA+/H+ exchanger to bicarbonate reabsorption in proximal convoluted tubules of old rats , 2006, Aging cell.
[49] P. Dudeja,et al. Transcriptional stimulation of the human NHE3 promoter activity by PMA: PKC independence and involvement of the transcription factor EGR-1. , 2006, The Biochemical journal.
[50] Mike Tyers,et al. BioGRID: a general repository for interaction datasets , 2005, Nucleic Acids Res..
[51] K. Strange. The end of "naive reductionism": rise of systems biology or renaissance of physiology? , 2005, American journal of physiology. Cell physiology.
[52] W. Bains. Paradoxes of non-trivial gene networks: how cancer-causing mutations can appear to be cancer-protective. , 2004, Rejuvenation research.
[53] J. Stelling,et al. Robustness of Cellular Functions , 2004, Cell.
[54] Lan V. Zhang,et al. Evidence for dynamically organized modularity in the yeast protein–protein interaction network , 2004, Nature.
[55] M. Gerstein,et al. Annotation transfer between genomes: protein-protein interologs and protein-DNA regulogs. , 2004, Genome research.
[56] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[57] Hanno Steen,et al. Development of human protein reference database as an initial platform for approaching systems biology in humans. , 2003, Genome research.
[58] M. Low,et al. Lack of Proopiomelanocortin Peptides Results in Obesity and Defective Adrenal Function but Normal Melanocyte Pigmentation in the Murine C57BL/6 Genetic Background , 2003, Annals of the New York Academy of Sciences.
[59] J. Cassiman,et al. The cystic fibrosis transmembrane conductance regulator: an intriguing protein with pleiotropic functions. , 2002, Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society.
[60] G. Giebisch,et al. Role of NHE isoforms in mediating bicarbonate reabsorption along the nephron. , 2001, American journal of physiology. Renal physiology.
[61] M. G. Lee,et al. Novel amiloride-sensitive sodium-dependent proton secretion in the mouse proximal convoluted tubule. , 2000, The Journal of clinical investigation.
[62] M. Vidal,et al. Protein interaction mapping in C. elegans using proteins involved in vulval development. , 2000, Science.
[63] L. Yaswen,et al. Obesity in the mouse model of pro-opiomelanocortin deficiency responds to peripheral melanocortin , 1999, Nature Medicine.
[64] P. Aronson,et al. Specific Association of Megalin and the Na+/H+ Exchanger Isoform NHE3 in the Proximal Tubule* , 1999, The Journal of Biological Chemistry.
[65] Agnieszka Sidor,et al. NHE3 Kinase A Regulatory Protein E3KARP Binds the Epithelial Brush Border Na+/H+ Exchanger NHE3 and the Cytoskeletal Protein Ezrin* , 1998, The Journal of Biological Chemistry.
[66] D. Goltzman,et al. Structurally Diverse N-terminal Peptides of Parathyroid Hormone (PTH) and PTH-related Peptide (PTHRP) Inhibit the Na+/H+ Exchanger NHE3 Isoform by Binding to the PTH/PTHRP Receptor Type I and Activating Distinct Signaling Pathways* , 1996, The Journal of Biological Chemistry.
[67] M. Baum. Developmental Changes in Rabbit Juxtamedullary Proximal Convoluted Tubule Acidification , 1992, Pediatric Research.
[68] M. DePamphilis,et al. HUMAN DISEASE , 1957, The Ulster Medical Journal.
[69] Harald Mischak,et al. Integrating proteomics profiling data sets: a network perspective. , 2015, Methods in molecular biology.
[70] O. Moe,et al. Renal Acid-Base Physiology Proximal tubule Na / H exchanger activity in adult NHE 8 / , NHE 3 / , and NHE 3 / / NHE 8 / mice , 2012 .
[71] C. J. Lote,et al. The Proximal Tubule , 2012 .
[72] J. Verlander,et al. Role of NH3 and NH4+ transporters in renal acid-base transport. , 2011, American journal of physiology. Renal physiology.
[73] Erika Check Hayden. Human genome at ten: Life is complicated. , 2010, Nature.
[74] A. Yoshiki,et al. Mouse phenome research: implications of genetic background. , 2006, ILAR journal.
[75] O. Loewi,et al. Über humorale übertragbarkeit der Herznervenwirkung , 2005, Pflüger's Archiv für die gesamte Physiologie des Menschen und der Tiere.
[76] Martin Vingron,et al. IntAct: an open source molecular interaction database , 2004, Nucleic Acids Res..
[77] Christian von Mering,et al. STRING: a database of predicted functional associations between proteins , 2003, Nucleic Acids Res..
[78] Judith A. Blake,et al. The Mouse Genome Database (MGD). A comprehensive public resource of genetic, phenotypic and genomic data. The Mouse Genome Informatics Group , 1997, Nucleic Acids Res..
[79] L. Hamm,et al. Effects of barium and 5-(N-ethyl-N-isopropyl)-amiloride on proximal tubule ammonia transport. , 1992, The American journal of physiology.