Reconstructing mammalian membrane architecture by large area cellular tomography.

Microscopy has provided crucial insights into the fundamental features and architecture of mammalian cells and organelles for now over a century. These glimpses of cellular fine structure have thus guided our impressions-as molecular cell biologists-of how mammalian cells and their numerous membrane-bound internal compartments are organized within three dimensions (3D), although for the most part these extrapolations have come from static two-dimensional (2D) images taken from the light or electron microscope. Recently, however, we have finally been afforded the chance to dissect subcellular membrane architecture and dynamics at the nanoanatomical level in 3D through development of the technique referred to as electron microscope (EM) tomography, also frequently termed "cellular tomography" (ET). With ET now in hand as a tool that effectively allows one to study molecular membrane traffic "in context" (in situ), it has become increasingly important to push the continued advancement of this method so that large cellular volumes can be reconstructed without sacrificing the ability to clearly resolve structures of interest. Likewise, it has become critical to do this as quickly and efficiently as possible in order to generate statistically significant sample sizes that offer reliable insights into cell organization under different physiological or experimental conditions. In this chapter, some of the technical developments, as well as key biological questions that have driven the development of large area ET, will be presented and discussed.

[1]  J. Hutton,et al.  Translational regulation of proinsulin biosynthesis and proinsulin conversion in the pancreatic beta-cell. , 2000, Seminars in cell & developmental biology.

[2]  J. Yates,et al.  Proteomics of organelles and large cellular structures , 2005, Nature Reviews Molecular Cell Biology.

[3]  David N. Mastronarde,et al.  Golgi Structure in Three Dimensions: Functional Insights from the Normal Rat Kidney Cell , 1999, The Journal of cell biology.

[4]  I. Mellman,et al.  The Golgi complex: In vitro veritas? , 1992, Cell.

[5]  Mark Ellisman,et al.  The neuronal endomembrane system. I. Direct links between rough endoplasmic reticulum and the cis element of the Golgi apparatus , 1985, The Journal of neuroscience : the official journal of the Society for Neuroscience.

[6]  D. E. Yorde,et al.  Morphometric Studies of Secretory Granule Distribution and Association With Microtubules in β-Cells of Rat Islets During Glucose Stimulation , 1987, Diabetes.

[7]  A. Luini,et al.  Variations on the Intracellular Transport Theme: Maturing Cisternae and Trafficking Tubules , 1997, The Journal of cell biology.

[8]  M. Morphew,et al.  Improved preservation of ultrastructure in difficult‐to‐fix organisms by high pressure freezing and freeze substitution: I. Drosophila melanogaster and Strongylocentrotus purpuratus embryos , 1993, Microscopy research and technique.

[9]  T. Nilsson,et al.  Cisternal maturation and vesicle transport: join the band wagon! (Review) , 2003, Molecular membrane biology.

[10]  D. Leroith,et al.  Molecular and cellular biology of diabetes mellitus , 1989 .

[11]  H. Hauri,et al.  Proteomics of Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) Membranes from Brefeldin A-treated HepG2 Cells Identifies ERGIC-32, a New Cycling Protein That Interacts with Human Erv46* , 2004, Journal of Biological Chemistry.

[12]  D. Mastronarde Dual-axis tomography: an approach with alignment methods that preserve resolution. , 1997, Journal of structural biology.

[13]  R. Robertson,et al.  Morphological and Functional Characterization of βTC-6 Cells—an Insulin-Secreting Cell Line Derived From Transgenic Mice , 1995, Diabetes.

[14]  D. Williams,et al.  Insulin synthesis in a clonal cell line of simian virus 40-transformed hamster pancreatic beta cells. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[15]  L. Orci,et al.  (Pro)insulin associates with Golgi membranes of pancreatic B cells. , 1984, Proceedings of the National Academy of Sciences of the United States of America.

[16]  R. Crowther,et al.  A method for monitoring the collapse of plastic sections as a function of electron dose. , 1988, Ultramicroscopy.

[17]  David N Mastronarde,et al.  Automated electron microscope tomography using robust prediction of specimen movements. , 2005, Journal of structural biology.

[18]  B. Brinkley,et al.  Microtubules and beta cell function: effect of colchicine on microtubules and insulin secretion in vitro by mouse beta cells , 1982, The Journal of cell biology.

[19]  G. Rutter,et al.  Insulin secretion by ‘kiss-and-run’ exocytosis in clonal pancreatic islet β-cells , 2003 .

[20]  Tommy Nilsson,et al.  The Golgi Apparatus: Balancing New with Old , 2002, Traffic.

[21]  P. Weidman Anterograde transport through the Golgi complex: do Golgi tubules hold the key? , 1995, Trends in cell biology.

[22]  C. Y. Tang,et al.  Three‐dimensional structure of the Golgi apparatus in mouse spermatids: A scanning electron microscopic study , 1999, The Anatomical record.

[23]  K. Simons,et al.  The trans Golgi network: sorting at the exit site of the Golgi complex. , 1986, Science.

[24]  L. Orci,et al.  ROLE OF MICROTUBULES IN THE PHASIC PATTERN OF INSULIN RELEASE * , 1975, Annals of the New York Academy of Sciences.

[25]  S. Bonner-Weir Morphological Evidence for Pancreatic Polarity of β-Cell Within Islets of Langerhans , 1988, Diabetes.

[26]  P. Arvan,et al.  Distinct molecular mechanisms for protein sorting within immature secretory granules of pancreatic beta-cells , 1994, The Journal of cell biology.

[27]  J. Yates,et al.  Organellar proteomics reveals Golgi arginine dimethylation. , 2004, Molecular biology of the cell.

[28]  P. Guest,et al.  Endoplasmic reticulum Ca2+ is important for the proteolytic processing and intracellular transport of proinsulin in the pancreatic beta-cell. , 1997, The Biochemical journal.

[29]  L. Rosenberg,et al.  Maintenance of beta-cell function and survival following islet isolation requires re-establishment of the islet-matrix relationship. , 1999, The Journal of endocrinology.

[30]  J. Lippincott-Schwartz,et al.  Studying protein dynamics in living cells , 2001, Nature Reviews Molecular Cell Biology.

[31]  F. Tashiro,et al.  EMBEDDED-CULTURE OF PANCREATIC β-CELLS DERIVED FROM TRANSGENIC MOUSE INSULINOMA AS A POTENTIAL SOURCE FOR XENOTRANSPLANTATION USING A DIFFUSION CHAMBER. , 1995, Cell transplantation.

[32]  G. Griffiths Ultrastructure in cell biology: do we still need it? , 2004, European journal of cell biology.

[33]  Wolfgang Baumeister,et al.  A visual approach to proteomics , 2006, Nature Reviews Molecular Cell Biology.

[34]  J. Rothman,et al.  Dissection of a single round of vesicular transport: Sequential intermediates for intercisternal movement in the Golgi stack , 1989, Cell.

[35]  A. Mitsushima,et al.  Three-dimensional architecture of the Golgi complex observed by high resolution scanning electron microscopy. , 1986, Journal of submicroscopic cytology.

[36]  J. Frank,et al.  Double-tilt electron tomography. , 1995, Ultramicroscopy.

[37]  J. Slot,et al.  Immunoelectron microscopic exploration of the Golgi complex. , 1983, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[38]  Zhaohong Yi,et al.  The Rab27a/Granuphilin Complex Regulates the Exocytosis of Insulin-Containing Dense-Core Granules , 2002, Molecular and Cellular Biology.

[39]  L. Staehelin,et al.  Advances in ultrarapid freezing for the preservation of cellular ultrastructure , 1986 .

[40]  J. Lippincott-Schwartz,et al.  Secretory protein trafficking and organelle dynamics in living cells. , 2000, Annual review of cell and developmental biology.

[41]  A. Fraser,et al.  Systems biology: where it's at in 2005 , 2005, Genome Biology.

[42]  Peer Bork,et al.  Towards Cellular Systems in 4D , 2005, Cell.

[43]  N. Ferrand,et al.  Development of the beta cells. , 1992, The Mount Sinai journal of medicine, New York.

[44]  L. Orci,et al.  Localization of the pancreatic beta cell glucose transporter to specific plasma membrane domains. , 1989, Science.

[45]  P. Arvan,et al.  Protein Traffic from the Secretory Pathway to the Endosomal System in Pancreatic β-Cells* , 2000, The Journal of Biological Chemistry.

[46]  D. Mastronarde,et al.  Kinetochore microtubules in PTK cells , 1992, The Journal of cell biology.

[47]  B. Wicksteed,et al.  Insulin Secretory Deficiency and Glucose Intolerance in Rab3A Null Mice* , 2003, The Journal of Biological Chemistry.

[48]  R. Robertson,et al.  Determinants of glucose toxicity and its reversibility in the pancreatic islet beta-cell line, HIT-T15. , 2000, American journal of physiology. Endocrinology and metabolism.

[49]  B. Wicksteed,et al.  Glucose-induced Translational Control of Proinsulin Biosynthesis Is Proportional to Preproinsulin mRNA Levels in Islet β-Cells but Not Regulated via a Positive Feedback of Secreted Insulin* , 2003, Journal of Biological Chemistry.

[50]  R. Zinkowski,et al.  The identification, purification, and characterization of a pancreatic beta-cell form of the microtubule adenosine triphosphatase kinesin. , 1992, Endocrinology.

[51]  N. Morgan,et al.  GTP-binding proteins in cell survival and demise: the emerging picture in the pancreatic beta-cell. , 2002, Biochemical pharmacology.

[52]  A. Claude,et al.  A STUDY OF TISSUE CULTURE CELLS BY ELECTRON MICROSCOPY , 1945, The Journal of experimental medicine.

[53]  J. Dubochet,et al.  High-pressure freezing for cryoelectron microscopy. , 1995, Trends in cell biology.

[54]  C. Rhodes,et al.  The biosynthesis of the subtilisin-related proprotein convertase PC3, but no that of the PC2 convertase, is regulated by glucose in parallel to proinsulin biosynthesis in rat pancreatic islets. , 1993, The Journal of biological chemistry.

[55]  P. Novikoff,et al.  Cytochemical study of secretory process in transplantable insulinoma of syrian golden hamster. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[56]  J. Dubochet,et al.  On the preparation of cryosections for immunocytochemistry. , 1984, Journal of ultrastructure research.

[57]  G. Palade,et al.  The Golgi apparatus: 100 years of progress and controversy , 1998, Trends in Cell Biology.

[58]  B. Marsh,et al.  Direct continuities between cisternae at different levels of the Golgi complex in glucose-stimulated mouse islet beta cells. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[59]  H. Hirling,et al.  Pancreatic beta-cell protein granuphilin binds Rab3 and Munc-18 and controls exocytosis. , 2002, Molecular biology of the cell.

[60]  L. Olson,et al.  Insulin-secreting cell lines: classification, characteristics and potential applications. , 1996, Diabetes & metabolism.

[61]  J. McIntosh,et al.  High-voltage electron tomography of spindle pole bodies and early mitotic spindles in the yeast Saccharomyces cerevisiae. , 1999, Molecular biology of the cell.

[62]  R. Wepf,et al.  From tissue to cellular ultrastructure: closing the gap between micro‐ and nanostructural imaging , 2003, Journal of microscopy.

[63]  S. Howell,et al.  Insulin secretion: The effector system , 1984, Experientia.

[64]  L. Orci,et al.  Loss of polarization of plasma membrane domains in transformed pancreatic endocrine cell lines. , 1986, Endocrinology.

[65]  M. Bornens,et al.  The Golgi apparatus at the cell centre. , 2003, Current opinion in cell biology.

[66]  J Frank,et al.  Measurement of neuronal surface area using high-voltage electron microscope tomography , 1992, NeuroImage.

[67]  D. Mastronarde,et al.  Organellar relationships in the Golgi region of the pancreatic beta cell line, HIT-T15, visualized by high resolution electron tomography , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[68]  A. Cortizo,et al.  Vectorial insulin secretion by pancreatic β‐cells , 1990 .

[69]  Stephen J. Smith,et al.  Tubulovesicular processes emerge from trans-Golgi cisternae, extend along microtubules, and interlink adjacent trans-Golgi elements into a reticulum , 1990, Cell.

[70]  J. M. Seguí-Simarro,et al.  Electron Tomographic Analysis of Somatic Cell Plate Formation in Meristematic Cells of Arabidopsis Preserved by High-Pressure Freezing , 2004, The Plant Cell Online.

[71]  Brad J Marsh,et al.  Lessons from tomographic studies of the mammalian Golgi. , 2005, Biochimica et biophysica acta.

[72]  B. Marsh,et al.  The mammalian Golgi — complex debates , 2002, Nature Reviews Molecular Cell Biology.

[73]  M. Donelan,et al.  Ca2+-dependent Dephosphorylation of Kinesin Heavy Chain on β-Granules in Pancreatic β-Cells , 2002, The Journal of Biological Chemistry.

[74]  W. Gordon Whaley,et al.  The Golgi Apparatus , 1975, Cell Biology Monographs.

[75]  P. Arvan,et al.  Sorting and storage during secretory granule biogenesis: looking backward and looking forward. , 1998, The Biochemical journal.

[76]  J R Kremer,et al.  Computer visualization of three-dimensional image data using IMOD. , 1996, Journal of structural biology.

[77]  Y. Clermont,et al.  Three-dimensional structure of the Golgi apparatus in mammalian cells , 1997 .

[78]  G. Rutter,et al.  Insulin secretion: Feed-forward control of insulin biosynthesis? , 1999, Current Biology.

[79]  P. Halban,et al.  Trafficking/sorting and granule biogenesis in the beta-cell. , 2000, Seminars in cell & developmental biology.

[80]  L. Orci,et al.  The insulin factory. , 1988, Scientific American.

[81]  J. Rothman,et al.  Molecular dissection of the secretory pathway , 1992, Nature.

[82]  T. Kosaka,et al.  Three‐dimensional organization of neuronal and glial processes: High voltage electron microscopy , 1994, Microscopy research and technique.

[83]  T. Katsumoto,et al.  Association of cytoskeletons with the Golgi apparatus: three-dimensional observation and computer-graphic reconstruction. , 1991, Journal of electron microscopy.

[84]  J R Kremer,et al.  HVEM tomography of the trans-Golgi network: structural insights and identification of a lace-like vesicle coat , 1994, The Journal of cell biology.

[85]  L. Orci The insulin cell: its cellular environment and how it processes (pro)insulin. , 1986, Diabetes/metabolism reviews.

[86]  J. McIntosh,et al.  Electron Microscopy of Cells , 2001, The Journal of cell biology.

[87]  S. Sandler,et al.  The significance of culture for successful cryopreservation of isolated pancreatic islets of Langerhans. , 1984, Cryobiology.

[88]  M. Donelan,et al.  A low-affinity Ca2+-dependent association of calmodulin with the Rab3A effector domain inversely correlates with insulin exocytosis. , 2001, Diabetes.

[89]  D N Mastronarde,et al.  Structural evidence for multiple transport mechanisms through the Golgi in the pancreatic beta-cell line, HIT-T15. , 2001, Biochemical Society transactions.

[90]  G. Rutter,et al.  Involvement of conventional kinesin in glucose-stimulated secretory granule movements and exocytosis in clonal pancreatic β-cells , 2002, Journal of Cell Science.

[91]  Kenneth A. Taylor,et al.  Three-dimensional reconstruction of rigor insect flight muscle from tilted thin sections , 1984, Nature.

[92]  D. Mastronarde,et al.  Three-Dimensional Analysis of Syncytial-Type Cell Plates during Endosperm Cellularization Visualized by High Resolution Electron Tomography , 2001, The Plant Cell Online.

[93]  F. Gu,et al.  Trans-Golgi network sorting , 2001, Cellular and Molecular Life Sciences CMLS.