The EcoCyc Database
暂无分享,去创建一个
Peter D. Karp | Milton H. Saier | Monica Riley | Ian T. Paulsen | Julio Collado-Vides | Suzanne M. Paley | Alida Pellegrini-Toole | César Bonavides-Martínez | Socorro Gama-Castro | M. Riley | J. Collado-Vides | P. Karp | S. Paley | I. Paulsen | M. Saier | S. Gama-Castro | César Bonavides-Martínez | A. Pellegrini-Toole
[1] Alexander Gammerman,et al. Sequence alignment kernel for recognition of promoter regions , 2003, Bioinform..
[2] Suzanne M. Paley,et al. Integrated pathway/genome databases and their role in drug discovery , 1999 .
[3] Cyrus Chothia,et al. Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae. , 2002, Genome research.
[4] B. Bochner,et al. Phenotype microarrays for high-throughput phenotypic testing and assay of gene function. , 2001, Genome research.
[5] Julio Collado-Vides,et al. RegulonDB (version 3.2): transcriptional regulation and operon organization in Escherichia coli K-12 , 2001, Nucleic Acids Res..
[6] Hiroyuki Kaji,et al. Only a Small Subset of the Horizontally Transferred Chromosomal Genes in Escherichia coli Are Translated into Proteins*S , 2004, Molecular & Cellular Proteomics.
[7] Ramon Gonzalez,et al. Gene Array‐Based Identification of Changes That Contribute to Ethanol Tolerance in Ethanologenic Escherichia coli: Comparison of KO11 (Parent) to LY01 (Resistant Mutant) , 2003, Biotechnology progress.
[8] Janet M Thornton,et al. Analysis of metabolic networks using a pathway distance metric through linear programming. , 2003, Metabolic engineering.
[9] J. Collado-Vides,et al. The repertoire of DNA-binding transcriptional regulators in Escherichia coli K-12. , 2000, Nucleic acids research.
[10] Peter D. Karp,et al. A Collaborative Environment for Authoring Large Knowledge Bases , 1999, Journal of Intelligent Information Systems.
[11] P D Karp,et al. Pathway Databases: A Case Study in Computational Symbolic Theories , 2001, Science.
[12] B. Palsson,et al. Stoichiometric interpretation of Escherichia coli glucose catabolism under various oxygenation rates , 1993, Applied and environmental microbiology.
[13] J. Bailey,et al. Toward a science of metabolic engineering , 1991, Science.
[14] S. Shen-Orr,et al. Network motifs in the transcriptional regulation network of Escherichia coli , 2002, Nature Genetics.
[15] G. Stephanopoulos,et al. Network rigidity and metabolic engineering in metabolite overproduction , 1991, Science.
[16] M. Frazier,et al. Realizing the Potential of the Genome Revolution: The Genomes to Life Program , 2003, Science.
[17] Peter D. Karp,et al. An ontology for biological function based on molecular interactions , 2000, Bioinform..
[18] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[19] Matteo Pellegrini,et al. Prolinks: a database of protein functional linkages derived from coevolution , 2004, Genome Biology.
[20] Peter D. Karp,et al. Eco Cyc: encyclopedia of Escherichia coli genes and metabolism , 1999, Nucleic Acids Res..
[21] Joachim Selbig,et al. Hypothesis-driven approach to predict transcriptional units from gene expression data , 2004, Bioinform..
[22] A. Bélaich,et al. Microcalorimetric study of the anaerobic growth of Escherichia coli: growth thermograms in a synthetic medium , 1976, Journal of bacteriology.
[23] M. Riley,et al. MultiFun, a multifunctional classification scheme for Escherichia coli K-12 gene products. , 2000, Microbial & comparative genomics.
[24] Milton H. Saier,et al. The IUBMB-endorsed transporter classification system , 2004, Methods in molecular biology.
[25] Peter D. Karp,et al. EcoCyc: The Resource and the Lessons Learned , 2002 .
[26] Janet M Thornton,et al. Pathway evolution, structurally speaking. , 2002, Current opinion in structural biology.
[27] R. Larossa,et al. Impact of genomic technologies on studies of bacterial gene expression. , 2002, Annual review of microbiology.
[28] A. Barabasi,et al. Hierarchical Organization of Modularity in Metabolic Networks , 2002, Science.
[29] B. Palsson,et al. Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth , 2002, Nature.
[30] J. W. Campbell,et al. Experimental Determination and System Level Analysis of Essential Genes in Escherichia coli MG1655 , 2003, Journal of bacteriology.
[31] A. Zeng,et al. An extended transcriptional regulatory network of Escherichia coli and analysis of its hierarchical structure and network motifs. , 2004, Nucleic acids research.
[32] Peter D. Karp. Using the EcoCyc Database , 1997 .
[33] Frank Hoffmann,et al. Metabolic adaptation of Escherichia coli during temperature-induced recombinant protein production: 2. Redirection of metabolic fluxes. , 2002, Biotechnology and bioengineering.
[34] Masanori Arita. The metabolic world of Escherichia coli is not small. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[35] Peter D. Karp,et al. Integrated Access to Metabolic and Genomic Data , 1996, J. Comput. Biol..
[36] B. Palsson,et al. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR) , 2003, Genome Biology.
[37] Peter D. Karp,et al. The EcoCyc and MetaCyc databases , 2000, Nucleic Acids Res..