Making sense of low oxygen sensing.

[1]  J. Callis,et al.  A delayed leaf senescence mutant is defective in arginyl-tRNA:protein arginyltransferase, a component of the N-end rule pathway in Arabidopsis. , 2002, The Plant journal : for cell and molecular biology.

[2]  Filip Rolland,et al.  A central integrator of transcription networks in plant stress and energy signalling , 2007, Nature.

[3]  M. Sauter,et al.  Epidermal Cell Death in Rice Is Confined to Cells with a Distinct Molecular Identity and Is Mediated by Ethylene and H2O2 through an Autoamplified Signal Pathway[W] , 2009, The Plant Cell Online.

[4]  Arthur R. Grossman,et al.  Anaerobic Acclimation in Chlamydomonas reinhardtii , 2007, Journal of Biological Chemistry.

[5]  J. Bailey-Serres,et al.  Submergence Tolerant Rice: SUB1’s Journey from Landrace to Modern Cultivar , 2010, Rice.

[6]  T. Fujimura,et al.  Genome-Wide Analysis of the ERF Gene Family in Arabidopsis and Rice[W] , 2006, Plant Physiology.

[7]  Adam J. Carroll,et al.  Differential Molecular Responses of Rice and Wheat Coleoptiles to Anoxia Reveal Novel Metabolic Adaptations in Amino Acid Metabolism for Tissue Tolerance1[W][OA] , 2011, Plant Physiology.

[8]  T. Colmer Long-distance transport of gases in plants: a perspective on internal aeration and radial oxygen loss from roots , 2003 .

[9]  Joost T. van Dongen,et al.  Potassium (K+) gradients serve as a mobile energy source in plant vascular tissues , 2010, Proceedings of the National Academy of Sciences.

[10]  M. Shih,et al.  The AP2/ERF Transcription Factor AtERF73/HRE1 Modulates Ethylene Responses during Hypoxia in Arabidopsis1[W][OA] , 2011, Plant Physiology.

[11]  L. Voesenek,et al.  Flooding stress: acclimations and genetic diversity. , 2008, Annual review of plant biology.

[12]  M. Ashikari,et al.  Stunt or elongate? Two opposite strategies by which rice adapts to floods , 2010, Journal of Plant Research.

[13]  Joost T. van Dongen,et al.  HRE1 and HRE2, two hypoxia-inducible ethylene response factors, affect anaerobic responses in Arabidopsis thaliana. , 2010, The Plant journal : for cell and molecular biology.

[14]  S. Ball,et al.  Hydrogen Production in Chlamydomonas: Photosystem II-Dependent and -Independent Pathways Differ in Their Requirement for Starch Metabolism1[W] , 2009, Plant Physiology.

[15]  K. Jung,et al.  The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors1[C][W][OA] , 2010, Plant Physiology.

[16]  J. Bailey-Serres,et al.  Plant responses to hypoxia--is survival a balancing act? , 2004, Trends in plant science.

[17]  Jun Yang,et al.  Arabidopsis RAP2.2: An Ethylene Response Transcription Factor That Is Important for Hypoxia Survival1[W][OA] , 2010, Plant Physiology.

[18]  Joost T. van Dongen,et al.  Phloem Import and Storage Metabolism Are Highly Coordinated by the Low Oxygen Concentrations within Developing Wheat Seeds1 , 2004, Plant Physiology.

[19]  D. Hardie Why Starving Cells Eat Themselves , 2011, Science.

[20]  M. Sauter,et al.  The hypoxia responsive transcription factor genes ERF71/HRE2 and ERF73/HRE1 of Arabidopsis are differentially regulated by ethylene. , 2011, Physiologia plantarum.

[21]  D. Galbraith,et al.  Profiling translatomes of discrete cell populations resolves altered cellular priorities during hypoxia in Arabidopsis , 2009, Proceedings of the National Academy of Sciences.

[22]  Joost T. van Dongen,et al.  Glycolysis and the Tricarboxylic Acid Cycle Are Linked by Alanine Aminotransferase during Hypoxia Induced by Waterlogging of Lotus japonicus1[W][OA] , 2010, Plant Physiology.

[23]  F. Wellmer,et al.  The plant N-end rule pathway: structure and functions. , 2010, Trends in plant science.

[24]  A. Grootjans,et al.  Aquatic adventitious roots of the wetland plant Meionectes brownii can photosynthesize : implications for root function during flooding , 2011 .

[25]  M. van Zanten,et al.  Natural variation of submergence tolerance among Arabidopsis thaliana accessions. , 2011, The New phytologist.

[26]  Adam J. Carroll,et al.  Differential Response of Gray Poplar Leaves and Roots Underpins Stress Adaptation during Hypoxia1[W] , 2008, Plant Physiology.

[27]  P. Langridge,et al.  Breeding Technologies to Increase Crop Production in a Changing World , 2010, Science.

[28]  K. Fagerstedt,et al.  Intracellular pH in rice and wheat root tips under hypoxic and anoxic conditions , 2008, Plant signaling & behavior.

[29]  E. Ábrahám,et al.  Functional Identification of Arabidopsis Stress Regulatory Genes Using the Controlled cDNA Overexpression System1[W][OA] , 2008, Plant Physiology.

[30]  J. Bailey-Serres,et al.  Submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice , 2008, Proceedings of the National Academy of Sciences.

[31]  O. Blokhina,et al.  Antioxidants, oxidative damage and oxygen deprivation stress: a review. , 2003, Annals of botany.

[32]  A. Limami,et al.  Characterization of alanine aminotransferase (AlaAT) multigene family and hypoxic response in young seedlings of the model legume Medicago truncatula. , 2006, Journal of experimental botany.

[33]  A. Varshavsky The N‐end rule pathway and regulation by proteolysis , 2011, Protein science : a publication of the Protein Society.

[34]  J. Pozueta-Romero,et al.  Effect of anoxia on starch breakdown in rice and wheat seeds , 1992, Planta.

[35]  P. Perata,et al.  Hormonal interplay during adventitious root formation in flooded tomato plants. , 2010, The Plant journal : for cell and molecular biology.

[36]  S. Mancuso,et al.  Effect of hypoxic acclimation on anoxia tolerance in Vitis roots: response of metabolic activity and K+ fluxes. , 2011, Plant & cell physiology.

[37]  Joost T. van Dongen,et al.  Phloem Metabolism and Function Have to Cope with Low Internal Oxygen1 , 2003, Plant Physiology.

[38]  F. Schröder,et al.  EXORDIUM-LIKE1 Promotes Growth during Low Carbon Availability in Arabidopsis1[C][W] , 2011, Plant Physiology.

[39]  S. Gamblin,et al.  AMP-activated protein kinase: nature's energy sensor. , 2011, Nature chemical biology.

[40]  P. Geigenberger,et al.  Regulation of Respiration and Fermentation to Control the Plant Internal Oxygen Concentration1[OA] , 2008, Plant Physiology.

[41]  A. Millar,et al.  Does anoxia tolerance involve altering the energy currency towards PPi? , 2008, Trends in plant science.

[42]  D. Llewellyn,et al.  The Low-Oxygen-Induced NAC Domain Transcription Factor ANAC102 Affects Viability of Arabidopsis Seeds following Low-Oxygen Treatment1[W][OA] , 2009, Plant Physiology.

[43]  E. Septiningsih,et al.  QTLs associated with tolerance of flooding during germination in rice (Oryza sativa L.) , 2010, Euphytica.

[44]  J. V. van Dongen,et al.  The Composition of Plant Mitochondrial Supercomplexes Changes with Oxygen Availability* , 2011, The Journal of Biological Chemistry.

[45]  E. Septiningsih,et al.  Molecular marker survey and expression analyses of the rice submergence-tolerance gene SUB1A , 2010, Theoretical and Applied Genetics.

[46]  A. Mustroph,et al.  The Arabidopsis translatome cell-specific mRNA atlas , 2010, Plant signaling & behavior.

[47]  L. Voesenek,et al.  Life in the balance: a signaling network controlling survival of flooding. , 2010, Current opinion in plant biology.

[48]  N. Chandel,et al.  Mitochondrial regulation of oxygen sensing. , 2005, Mitochondrion.

[49]  K. Sakano,et al.  Involvement of plasma membrane H+-ATPase in anoxic elongation of stems in pondweed (Potamogeton distinctus) turions. , 2011, The New phytologist.

[50]  J. Bailey-Serres,et al.  A Variable Cluster of Ethylene Response Factor–Like Genes Regulates Metabolic and Developmental Acclimation Responses to Submergence in Rice[W] , 2006, The Plant Cell Online.

[51]  A. Mustroph,et al.  Cross-Kingdom Comparison of Transcriptomic Adjustments to Low-Oxygen Stress Highlights Conserved and Plant-Specific Responses1[W][OA] , 2010, Plant Physiology.

[52]  D. Llewellyn,et al.  Global gene expression responses to waterlogging in roots and leaves of cotton (Gossypium hirsutum L.). , 2010, Plant & cell physiology.

[53]  M. Posewitz,et al.  Flexibility in Anaerobic Metabolism as Revealed in a Mutant of Chlamydomonas reinhardtii Lacking Hydrogenase Activity* , 2009, Journal of Biological Chemistry.

[54]  G. Bassel,et al.  Homeostatic response to hypoxia is regulated by the N-end rule pathway in plants , 2011, Nature.

[55]  A. Fernie,et al.  Not just a circle: flux modes in the plant TCA cycle. , 2010, Trends in plant science.

[56]  K. Shiono,et al.  Identification of genes expressed in maize root cortical cells during lysigenous aerenchyma formation using laser microdissection and microarray analyses. , 2011, The New phytologist.

[57]  A. Ismail,et al.  Mechanisms associated with tolerance to flooding during germination and early seedling growth in rice (Oryza sativa). , 2009, Annals of botany.

[58]  L. Voesenek,et al.  Molecular characterization of the submergence response of the Arabidopsis thaliana ecotype Columbia. , 2011, The New phytologist.

[59]  Francesco Licausi,et al.  Regulation of the molecular response to oxygen limitations in plants. , 2011, The New phytologist.

[60]  Chung-An Lu,et al.  Coordinated Responses to Oxygen and Sugar Deficiency Allow Rice Seedlings to Tolerate Flooding , 2009, Science Signaling.

[61]  L. Voesenek,et al.  Oxygen sensing in plants is mediated by an N-end rule pathway for protein destabilization , 2011, Nature.

[62]  T. Meinnel,et al.  Functional and Developmental Impact of Cytosolic Protein N-Terminal Methionine Excision in Arabidopsis1[w] , 2005, Plant Physiology.

[63]  O. Pedersen,et al.  Leaf gas films of Spartina anglica enhance rhizome and root oxygen during tidal submergence. , 2011, Plant, cell & environment.

[64]  C. Subbaiah,et al.  Mitochondrial retrograde regulation in plants. , 2007, Mitochondrion.

[65]  J. Bailey-Serres,et al.  The Submergence Tolerance Regulator SUB1A Mediates Crosstalk between Submergence and Drought Tolerance in Rice[W][OA] , 2010, Plant Cell.

[66]  P. Geigenberger,et al.  Response of plant metabolism to too little oxygen. , 2003, Current opinion in plant biology.

[67]  J. Bailey-Serres,et al.  Sensing and signalling in response to oxygen deprivation in plants and other organisms. , 2005, Annals of botany.

[68]  J. Benschop,et al.  Contrasting interactions between ethylene and abscisic acid in Rumex species differing in submergence tolerance. , 2005, The Plant journal : for cell and molecular biology.

[69]  Xian-Jun Song,et al.  The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water , 2009, Nature.

[70]  W. Kaelin,et al.  Oxygen sensing by metazoans: the central role of the HIF hydroxylase pathway. , 2008, Molecular cell.

[71]  John Quackenbush,et al.  Global Transcription Profiling Reveals Comprehensive Insights into Hypoxic Response in Arabidopsis1[w] , 2005, Plant Physiology.

[72]  G. Glevarec,et al.  Concerted modulation of alanine and glutamate metabolism in young Medicago truncatula seedlings under hypoxic stress , 2008, Journal of experimental botany.

[73]  L. Voesenek,et al.  Flooding tolerance: suites of plant traits in variable environments. , 2009, Functional plant biology : FPB.

[74]  E. Septiningsih,et al.  Development of submergence-tolerant rice cultivars: the Sub1 locus and beyond. , 2009, Annals of botany.

[75]  P. Schumacker,et al.  Hypoxia Triggers AMPK Activation through Reactive Oxygen Species-Mediated Activation of Calcium Release-Activated Calcium Channels , 2011, Molecular and Cellular Biology.

[76]  J. V. van Dongen,et al.  Regulation of respiration when the oxygen availability changes. , 2009, Physiologia plantarum.

[77]  Donna M Bond,et al.  VERNALIZATION INSENSITIVE 3 (VIN3) is required for the response of Arabidopsis thaliana seedlings exposed to low oxygen conditions. , 2009, The Plant journal : for cell and molecular biology.

[78]  J. Bailey-Serres,et al.  Sub1A is an ethylene-response-factor-like gene that confers submergence tolerance to rice , 2006, Nature.

[79]  H. Felle Apoplastic pH during low-oxygen stress in Barley. , 2006, Annals of botany.

[80]  O. Blokhina,et al.  Oxidative metabolism, ROS and NO under oxygen deprivation. , 2010, Plant physiology and biochemistry : PPB.

[81]  P. Perata,et al.  Effect of Anoxia on Carbohydrate Metabolism in Rice Seedlings , 1995, Plant physiology.

[82]  S. Rich,et al.  Surviving floods: leaf gas films improve O₂ and CO₂ exchange, root aeration, and growth of completely submerged rice. , 2009, The Plant journal : for cell and molecular biology.

[83]  F. Mafessoni,et al.  The Heat-Inducible Transcription Factor HsfA2 Enhances Anoxia Tolerance in Arabidopsis[W] , 2010, Plant Physiology.

[84]  Riki Kawaguchi,et al.  Genome-wide analysis of transcript abundance and translation in Arabidopsis seedlings subjected to oxygen deprivation. , 2005, Annals of botany.

[85]  Alisdair R. Fernie,et al.  Transcript and metabolite profiling of the adaptive response to mild decreases in oxygen concentration in the roots of arabidopsis plants , 2008, Annals of botany.

[86]  Insuk Lee,et al.  Towards Establishment of a Rice Stress Response Interactome , 2011, PLoS genetics.

[87]  G. Hurtt,et al.  Regulation of Natural Hazards : Floods and Fires Coordinating Lead Author : , 2006 .

[88]  E. Baena-González,et al.  Energy signaling in the regulation of gene expression during stress. , 2010, Molecular plant.

[89]  R. Pierik,et al.  Endogenous Abscisic Acid as a Key Switch for Natural Variation in Flooding-Induced Shoot Elongation1[W][OA] , 2010, Plant Physiology.

[90]  T. Colmer,et al.  Transfer of the barrier to radial oxygen loss in roots of Hordeum marinum to wheat (Triticum aestivum): evaluation of four H. marinum-wheat amphiploids. , 2011, The New phytologist.

[91]  M. van Zanten,et al.  Expression of rice SUB1A and SUB1C transcription factors in Arabidopsis uncovers flowering inhibition as a submergence tolerance mechanism. , 2011, The Plant journal : for cell and molecular biology.

[92]  F. Schreiber,et al.  Combined Noninvasive Imaging and Modeling Approaches Reveal Metabolic Compartmentation in the Barley Endosperm[W][OA] , 2011, The Plant Cell.

[93]  Charles J H Jang,et al.  Selective mRNA translation coordinates energetic and metabolic adjustments to cellular oxygen deprivation and reoxygenation in Arabidopsis thaliana. , 2008, The Plant journal : for cell and molecular biology.

[94]  P. Perata,et al.  Rice germination and seedling growth in the absence of oxygen. , 2009, Annals of botany.

[95]  D. Turpin,et al.  Anaerobic Carbon Metabolism by the Tricarboxylic Acid Cycle : Evidence for Partial Oxidative and Reductive Pathways during Dark Ammonium Assimilation. , 1989, Plant physiology.

[96]  Joost T. van Dongen,et al.  Comparative analysis between plant species of transcriptional and metabolic responses to hypoxia. , 2011, The New phytologist.