Thermodynamic analysis of interactions between denaturants and protein surface exposed on unfolding: Interpretation of urea and guanidinium chloride m‐values and their correlation with changes in accessible surface area (ASA) using preferential interaction coefficients and the local‐bulk domain mode

A denaturant m‐value is the magnitude of the slope of a typically linear plot of the unfolding free energy change ΔG°obs vs. molar concentration (C3) of denaturant. For a given protein, the guanidinium chloride (GuHCl) m‐value is approximately twice as large as the urea m‐value. Myers et al. (Protein Sci 1995;4:2138–2148) found that experimental m‐values for protein unfolding in both urea and GuHCl are proportional to ΔASA  corrmax , the calculated maximum amount of protein surface exposed to water in unfolding, corrected empirically for the effects of disulfide crosslinks: (urea m‐value/ΔASA  corrmax ) = 0.14±0.01 cal M−1 Å−2 and (GuHCl m‐value/ΔASA  corrmax ) = 0.28±0.03 cal M−1 Å−2.

[1]  G. Makhatadze THERMODYNAMICS OF PROTEIN INTERACTIONS WITH UREA AND GUANIDINIUM HYDROCHLORIDE , 1999 .

[2]  C. Pace Determination and analysis of urea and guanidine hydrochloride denaturation curves. , 1986, Methods in enzymology.

[3]  W. Laws,et al.  Oxidation of apolipoprotein(a) inhibits kringle‐associated lysine binding: The loss of intrinsic protein fluorescence suggests a role for tryptophan residues in the lysine binding site , 1997, Protein science : a publication of the Protein Society.

[4]  K. Dill,et al.  Solvent denaturation and stabilization of globular proteins. , 1991, Biochemistry.

[5]  L. Stroth,et al.  Thermodynamic interaction between urea and the peptide group in aqueous solutions at 25°C , 1981 .

[6]  S. Yadav,et al.  Determining stability of proteins from guanidinium chloride transition curves. , 1992, Biochemical Journal.

[7]  J. Schellman Solvent denaturation , 1978 .

[8]  M. Record,et al.  Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro. , 2000, Biochemistry.

[9]  J. Bond,et al.  Thermodynamic characterization of interactions of native bovine serum albumin with highly excluded (glycine betaine) and moderately accumulated (urea) solutes by a novel application of vapor pressure osmometry. , 1996, Biochemistry.

[10]  C. Tanford,et al.  THE SOLUBILITY OF AMINO ACIDS AND RELATED COMPOUNDS IN AQUEOUS UREA SOLUTIONS. , 1963, The Journal of biological chemistry.

[11]  G. Makhatadze,et al.  Thermal versus guanidine-induced unfolding of ubiquitin. An analysis in terms of the contributions from charge-charge interactions to protein stability. , 1999, Biochemistry.

[12]  A. D. Robertson,et al.  Thermodynamics of unfolding for turkey ovomucoid third domain: Thermal and chemical denaturation , 1993, Protein science : a publication of the Protein Society.

[13]  Osmotic and activity coefficients of aqueous guanidine hydrochloride solutions at 25.degree.C , 1977 .

[14]  C. Arrowsmith,et al.  Thermodynamic analysis of the structural stability of the tetrameric oligomerization domain of p53 tumor suppressor. , 1995, Biochemistry.

[15]  Jan Hermans,et al.  The Stability of Globular Protein , 1975 .

[16]  A. Fersht,et al.  Protein stability as a function of denaturant concentration: the thermal stability of barnase in the presence of urea. , 1995, Biochemistry.

[17]  K. Dill,et al.  Denatured states of proteins. , 1991, Annual review of biochemistry.

[18]  P. Nandi,et al.  Effects of urea and guanidine hydrochloride on peptide and nonpolar groups. , 1984, Biochemistry.

[19]  C. Tanford,et al.  Extension of the theory of linked functions to incorporate the effects of protein hydration. , 1969, Journal of molecular biology.

[20]  Walter J. Hamer,et al.  Isotonic Solutions. I. The Chemical Potential of Water in Aqueous Solutions of Sodium Chloride, Potassium Chloride, Sulfuric Acid, Sucrose, Urea and Glycerol at 25°1 , 1938 .

[21]  S. Yadav,et al.  Protein stability: urea-induced versus guanidine-induced unfolding of metmyoglobin. , 1996, Biochemistry.

[22]  J. Schellman The thermodynamic stability of proteins. , 1987, Annual review of biophysics and biophysical chemistry.

[23]  D. W. Bolen,et al.  A naturally occurring protective system in urea-rich cells: mechanism of osmolyte protection of proteins against urea denaturation. , 1997, Biochemistry.

[24]  C. Tanford Protein denaturation. , 1968, Advances in protein chemistry.

[25]  S. N. Timasheff,et al.  Control of protein stability and reactions by weakly interacting cosolvents: the simplicity of the complicated. , 1998, Advances in protein chemistry.

[26]  S. Gill,et al.  The solubilities of five cyclic dipeptides in water and in aqueous urea at 298.15 K: a quantitative model for the denaturation of proteins in aqueous urea solutions. , 1994, Biophysical chemistry.

[27]  M M Santoro,et al.  A test of the linear extrapolation of unfolding free energy changes over an extended denaturant concentration range. , 1992, Biochemistry.

[28]  Smith Js,et al.  Guanidine Hydrochloride Unfolding of Peptide Helices: Separation of Denaturant and Salt Effects† , 1996 .

[29]  M. Record,et al.  Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts. , 1998, Advances in protein chemistry.

[30]  W. Jencks,et al.  THE EFFECT OF COMPOUNDS OF THE UREA-GUANIDINIUM CLASS ON THE ACTIVITY COEFFICIENT OF ACETYLTETRAGLYCINE ETHYL ESTER AND RELATED COMPOUNDS. , 1965, Journal of the American Chemical Society.

[31]  D. Laurents,et al.  pH dependence of the urea and guanidine hydrochloride denaturation of ribonuclease A and ribonuclease T1. , 1990, Biochemistry.

[32]  J. M. Scholtz,et al.  Guanidine hydrochloride unfolding of peptide helices: separation of denaturant and salt effects. , 1996, Biochemistry.

[33]  P. Kuchel,et al.  Strong and weak binding of water to proteins studied by NMR triple-quantum filtered relaxation spectroscopy of 17O-water , 1997 .

[34]  C. Pace,et al.  The stability of globular proteins. , 1975, CRC critical reviews in biochemistry.

[35]  C. Pace,et al.  Denaturant m values and heat capacity changes: Relation to changes in accessible surface areas of protein unfolding , 1995, Protein science : a publication of the Protein Society.

[36]  D. Laurents,et al.  Urea denaturation of barnase: pH dependence and characterization of the unfolded state. , 1992, Biochemistry.

[37]  D. W. Bolen,et al.  Unfolding free energy changes determined by the linear extrapolation method. 1. Unfolding of phenylmethanesulfonyl alpha-chymotrypsin using different denaturants. , 1988, Biochemistry.

[38]  R. L. Baldwin,et al.  Urea unfolding of peptide helices as a model for interpreting protein unfolding. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[39]  S. Gill,et al.  Anomalous heat capacity of hydrophobic solvation , 1985 .

[40]  M. Record,et al.  Interpretation of preferential interaction coefficients of nonelectrolytes and of electrolyte ions in terms of a two-domain model. , 1995, Biophysical journal.

[41]  K. P. Murphy,et al.  Urea effects on protein stability: Hydrogen bonding and the hydrophobic effect , 1998, Proteins.

[42]  T. Arakawa,et al.  The mechanism of action of Na glutamate, lysine HCl, and piperazine-N,N'-bis(2-ethanesulfonic acid) in the stabilization of tubulin and microtubule formation. , 1984, The Journal of biological chemistry.

[43]  M. Yao,et al.  How valid are denaturant-induced unfolding free energy measurements? Level of conformance to common assumptions over an extended range of ribonuclease A stability. , 1995, Biochemistry.

[44]  M. Record,et al.  Salt dependence of oligoion-polyion binding: a thermodynamic description based on preferential interaction coefficients , 1993 .

[45]  J. M. Scholtz,et al.  Conformational stability of the Escherichia coli HPr protein: test of the linear extrapolation method and a thermodynamic characterization of cold denaturation. , 1996, Biochemistry.

[46]  J. M. Sanchez-Ruiz,et al.  A model-independent, nonlinear extrapolation procedure for the characterization of protein folding energetics from solvent-denaturation data. , 1996, Biochemistry.

[47]  J. Wyman,et al.  LINKED FUNCTIONS AND RECIPROCAL EFFECTS IN HEMOGLOBIN: A SECOND LOOK. , 1964, Advances in protein chemistry.

[48]  C. Dobson,et al.  Conformational stability of muscle acylphosphatase: the role of temperature, denaturant concentration, and pH. , 1998, Biochemistry.

[49]  D. W. Bolen,et al.  Unfolding free energy changes determined by the linear extrapolation method. 2. Incorporation of delta G degrees N-U values in a thermodynamic cycle. , 1988, Biochemistry.

[50]  Faizan Ahmad,et al.  Protein stability: functional dependence of denaturational Gibbs energy on urea concentration. , 1999, Biochemistry.