Difference analysis of respiratory pore flora between dolphins in the wild and in captivity

Dolphins are marine mammals with unique anatomical structures in their airways. These particular respiratory structures make dolphins very sensitive to microorganisms in the air, and the habitats of dolphins in captivity and in the wild are quite different. This causes captive dolphins to suffer from illnesses, especially respiratory diseases. Previous studies have shown that the respiratory flora plays an essential role in the health of humans and animals. Therefore, by comparative analysis of the respiratory flora of wild dolphins and dolphins in captivity, we want to find the flora related to dolphins’ respiratory diseases, and try to improve dolphin health through flora homeostasis. For this purpose, we performed 16S rRNA gene sequencing and analyses. We found that Proteobacteria, Firmicutes, Actinobacteria, Campilobacterota, Paracoccus, and other flora differed between wild and healthy and sub-healthy captive dolphins. Some of them are the dominant flora for promoting health, and the others may be essential pathogenic bacteria in the sub-healthy state of dolphins in captivity.

[1]  M. Sickinger,et al.  Helcococcus ovis associated with septic arthritis and bursitis in calves – a case report , 2021, BMC Veterinary Research.

[2]  G. G. Kharseeva,et al.  Corynebacterium spp. - problematic pathogens of the human respiratory tract (review of literature). , 2021, Russian Clinical Laboratory Diagnostics.

[3]  Shaoshan An,et al.  Identifying the Biogeographic Patterns of Rare and Abundant Bacterial Communities Using Different Primer Sets on the Loess Plateau , 2021, Microorganisms.

[4]  A. Saxena,et al.  Halomonas icarae sp. nov., a moderately halophilic bacterium isolated from beach soil in India. , 2020, International journal of systematic and evolutionary microbiology.

[5]  L. Carraro,et al.  The use of Unmanned Aerial Vehicles (UAVs) to sample the blow microbiome of small cetaceans , 2020, PloS one.

[6]  Gavin M Douglas,et al.  PICRUSt2 for prediction of metagenome functions , 2020, Nature Biotechnology.

[7]  E. Elinav,et al.  Interaction between microbiota and immunity in health and disease , 2020, Cell Research.

[8]  L. Delhaes,et al.  The Gut-Lung Axis in Health and Respiratory Diseases: A Place for Inter-Organ and Inter-Kingdom Crosstalks , 2020, Frontiers in Cellular and Infection Microbiology.

[9]  P. Bhatt,et al.  Current Approaches to and Future Perspectives on Methomyl Degradation in Contaminated Soil/Water Environments , 2020, Molecules.

[10]  Ling Chen,et al.  Dysbiosis of lower respiratory tract microbiome are associated with inflammation and microbial function variety , 2019, Respiratory Research.

[11]  C. L. Lim,et al.  Airway microbiome composition correlates with lung function and arterial stiffness in an age-dependent manner , 2019, PloS one.

[12]  Tomasz P. Wypych,et al.  The influence of the microbiome on respiratory health , 2019, Nature Immunology.

[13]  W. Guan,et al.  Altered community compositions of Proteobacteria in adults with bronchiectasis , 2018, International journal of chronic obstructive pulmonary disease.

[14]  Jia Gu,et al.  fastp: an ultra-fast all-in-one FASTQ preprocessor , 2018, bioRxiv.

[15]  E. Hsiao,et al.  The Microbiome and Host Behavior. , 2017, Annual review of neuroscience.

[16]  Y. P. Paudel,et al.  Investigating the Biosynthesis of Natural Products from Marine Proteobacteria: A Survey of Molecules and Strategies , 2017, Marine drugs.

[17]  J. Reif,et al.  The environment as a driver of immune and endocrine responses in dolphins (Tursiops truncatus) , 2017, PloS one.

[18]  K. Budden,et al.  Microbiome effects on immunity, health and disease in the lung , 2017, Clinical & translational immunology.

[19]  D. Berry,et al.  Pediatric obesity is associated with an altered gut microbiota and discordant shifts in F irmicutes populations , 2016, Environmental microbiology.

[20]  C. Yang,et al.  [Peptic Ulcer Disease Associated with Helicobacter pylori Infection]. , 2016, The Korean journal of gastroenterology = Taehan Sohwagi Hakhoe chi.

[21]  R. Talukdar,et al.  Role of the normal gut microbiota. , 2015, World journal of gastroenterology.

[22]  S. Loring,et al.  Lung mechanics and pulmonary function testing in cetaceans , 2015, The Journal of Experimental Biology.

[23]  D. Douglas,et al.  Evaluation of Potential Protective Factors Against Metabolic Syndrome in Bottlenose Dolphins: Feeding and Activity Patterns of Dolphins in Sarasota Bay, Florida , 2013, Front. Endocrinol..

[24]  Robert C. Edgar,et al.  UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.

[25]  Pelin Yilmaz,et al.  The SILVA ribosomal RNA gene database project: improved data processing and web-based tools , 2012, Nucleic Acids Res..

[26]  S. Salzberg,et al.  FLASH: fast length adjustment of short reads to improve genome assemblies , 2011, Bioinform..

[27]  C. Huttenhower,et al.  Metagenomic biomarker discovery and explanation , 2011, Genome Biology.

[28]  H. Rintala Actinobacteria in indoor environments: exposures and respiratory health effects. , 2011, Frontiers in bioscience.

[29]  William A. Walters,et al.  QIIME allows analysis of high-throughput community sequencing data , 2010, Nature Methods.

[30]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[31]  F. Acocella,et al.  Structure and biomechanical properties of the trachea of the striped dolphin Stenella coeruleoalba: evidence for evolutionary adaptations to diving. , 2005, The anatomical record. Part A, Discoveries in molecular, cellular, and evolutionary biology.