Process-Based Species Pools Reveal the Hidden Signature of Biotic Interactions Amid the Influence of Temperature Filtering

A persistent challenge in ecology is to tease apart the influence of multiple processes acting simultaneously and interacting in complex ways to shape the structure of species assemblages. We implement a heuristic approach that relies on explicitly defining species pools and permits assessment of the relative influence of the main processes thought to shape assemblage structure: environmental filtering, dispersal limitations, and biotic interactions. We illustrate our approach using data on the assemblage composition and geographic distribution of hummingbirds, a comprehensive phylogeny and morphological traits. The implementation of several process-based species pool definitions in null models suggests that temperature—but not precipitation or dispersal limitation—acts as the main regional filter of assemblage structure. Incorporating this environmental filter directly into the definition of assemblage-specific species pools revealed an otherwise hidden pattern of phylogenetic evenness, indicating that biotic interactions might further influence hummingbird assemblage structure. Such hidden patterns of assemblage structure call for a reexamination of a multitude of phylogenetic- and trait-based studies that did not explicitly consider potentially important processes in their definition of the species pool. Our heuristic approach provides a transparent way to explore patterns and refine interpretations of the underlying causes of assemblage structure.

[1]  Jacob van Etten,et al.  R package gdistance: distances and routes on geographical grids (version 1.1-4) , 2012 .

[2]  R. Ricklefs,et al.  The evolution of morphological diversity in continental assemblages of passerine birds , 2015, Evolution; international journal of organic evolution.

[3]  N. Blüthgen,et al.  Morphological traits determine specialization and resource use in plant–hummingbird networks in the neotropics , 2014 .

[4]  S. Harrison,et al.  What Are Species Pools and When Are They Important , 2014 .

[5]  D. Bolnick,et al.  Mistaking geography for biology: inferring processes from species distributions. , 2014, Trends in ecology & evolution.

[6]  J. L. Parra,et al.  Taxonomic, Phylogenetic, and Trait Beta Diversity in South American Hummingbirds , 2014, The American Naturalist.

[7]  R. Dudley,et al.  Erratum: Molecular phylogenetics and the diversification of hummingbirds (Current Biology (2014) 24 (910-916)) , 2014 .

[8]  R. Dudley,et al.  Molecular Phylogenetics and the Diversification of Hummingbirds , 2014, Current Biology.

[9]  Marlies Sazima,et al.  Processes entangling interactions in communities: forbidden links are more important than abundance in a hummingbird–plant network , 2014, Proceedings of the Royal Society B: Biological Sciences.

[10]  Ben G. Holt,et al.  Introducing the biogeographic species pool , 2013 .

[11]  W. Jetz,et al.  Spatial Scaling of Functional Structure in Bird and Mammal Assemblages , 2013, The American Naturalist.

[12]  Susanne A. Fritz,et al.  An Update of Wallace’s Zoogeographic Regions of the World , 2013, Science.

[13]  J. Lessard,et al.  Inferring local ecological processes amid species pool influences. , 2012, Trends in ecology & evolution.

[14]  J. L. Parra,et al.  Untangling the influence of ecological and evolutionary factors on trait variation across hummingbird assemblages , 2012 .

[15]  J. L. Parra,et al.  Sensitivity of Metrics of Phylogenetic Structure to Scale, Source of Data and Species Pool of Hummingbird Assemblages along Elevational Gradients , 2012, PloS one.

[16]  Susanne A. Fritz,et al.  Ecological and evolutionary determinants for the adaptive radiation of the Madagascan vangas , 2012, Proceedings of the National Academy of Sciences.

[17]  J. Lessard,et al.  Strong influence of regional species pools on continent-wide structuring of local communities , 2012, Proceedings of the Royal Society B: Biological Sciences.

[18]  Susanne A. Fritz,et al.  DIVERSIFICATION AND BIOGEOGRAPHIC PATTERNS IN FOUR ISLAND RADIATIONS OF PASSERINE BIRDS , 2012, Evolution; international journal of organic evolution.

[19]  J. L. Parra,et al.  Contrasting patterns of phylogenetic assemblage structure along the elevational gradient for major hummingbird clades , 2011 .

[20]  M. Meyer,et al.  Multilocus Resolution of Phylogeny and Timescale in the Extant Adaptive Radiation of Hawaiian Honeycreepers , 2011, Current Biology.

[21]  T. Smith,et al.  Diversification in Adelomyia hummingbirds follows Andean uplift , 2011, Molecular ecology.

[22]  Jonathan M. Chase,et al.  Disentangling the importance of ecological niches from stochastic processes across scales , 2011, Philosophical Transactions of the Royal Society B: Biological Sciences.

[23]  T. Smith,et al.  Evolutionary patterns of diversification in the Andean hummingbird genus Adelomyia. , 2011, Molecular phylogenetics and evolution.

[24]  J. Kerr,et al.  Quantifying the importance of regional and local filters for community trait structure in tropical and temperate zones. , 2011, Ecology.

[25]  Martin Zobel,et al.  Dark diversity: shedding light on absent species. , 2011, Trends in ecology & evolution.

[26]  John-Arvid Grytnes,et al.  Niche conservatism as an emerging principle in ecology and conservation biology. , 2010, Ecology letters.

[27]  J. L. Parra,et al.  Incorporating Clade Identity in Analyses of Phylogenetic Community Structure: An Example with Hummingbirds , 2010, The American Naturalist.

[28]  M. Mayfield,et al.  Opposing effects of competitive exclusion on the phylogenetic structure of communities. , 2010, Ecology letters.

[29]  Mark Vellend,et al.  Conceptual Synthesis in Community Ecology , 2010, The Quarterly Review of Biology.

[30]  M. K. Borregaard,et al.  Dispersion fields, diversity fields and null models: uniting range sizes and species richness , 2010 .

[31]  Gary R. Graves,et al.  Macroecological signals of species interactions in the Danish avifauna , 2010, Proceedings of the National Academy of Sciences.

[32]  J. L. Parra,et al.  Phylogenetic structure in tropical hummingbird communities , 2009, Proceedings of the National Academy of Sciences.

[33]  J. L. Parra,et al.  Molecular phylogenetics of the hummingbird genus Coeligena. , 2009, Molecular phylogenetics and evolution.

[34]  Steven W Kembel,et al.  Disentangling niche and neutral influences on community assembly: assessing the performance of community phylogenetic structure tests. , 2009, Ecology letters.

[35]  Ian J. Wang,et al.  Landscape genetics and least‐cost path analysis reveal unexpected dispersal routes in the California tiger salamander (Ambystoma californiense) , 2009, Molecular ecology.

[36]  Nathan J B Kraft,et al.  Functional Traits and Niche-Based Tree Community Assembly in an Amazonian Forest , 2008, Science.

[37]  J. Losos Phylogenetic niche conservatism, phylogenetic signal and the relationship between phylogenetic relatedness and ecological similarity among species. , 2008, Ecology letters.

[38]  Viral B. Shah,et al.  Using circuit theory to model connectivity in ecology, evolution, and conservation. , 2008, Ecology.

[39]  L. Revell,et al.  Phylogenetic signal, evolutionary process, and rate. , 2008, Systematic biology.

[40]  T. F. Hansen,et al.  A Comparative Method for Studying Adaptation to a Randomly Evolving Environment , 2008, Evolution; international journal of organic evolution.

[41]  A. Rambaut,et al.  BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.

[42]  Campbell O. Webb,et al.  Trait Evolution, Community Assembly, and the Phylogenetic Structure of Ecological Communities , 2007, The American Naturalist.

[43]  J. Zimmerman,et al.  The problem and promise of scale dependency in community phylogenetics. , 2006, Ecology.

[44]  B. Mcrae ISOLATION BY RESISTANCE , 2006, Evolution; international journal of organic evolution.

[45]  K. McConway,et al.  Absence of phylogenetic signal in the niche structure of meadow plant communities , 2006, Proceedings of the Royal Society B: Biological Sciences.

[46]  J. L. Parra,et al.  Very high resolution interpolated climate surfaces for global land areas , 2005 .

[47]  G. Graves,et al.  Source pool geometry and the assembly of continental avifaunas , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[48]  A. King,et al.  Phylogenetic Comparative Analysis: A Modeling Approach for Adaptive Evolution , 2004, The American Naturalist.

[49]  Jonathan M. Chase,et al.  The metacommunity concept: a framework for multi-scale community ecology , 2004 .

[50]  David R. Anderson,et al.  Model selection and multimodel inference : a practical information-theoretic approach , 2003 .

[51]  Campbell O. Webb,et al.  Phylogenies and Community Ecology , 2002 .

[52]  C. Rahbek,et al.  Geographic Range Size and Determinants of Avian Species Richness , 2002, Science.

[53]  Robert Dudley,et al.  The ecological and evolutionary interface of hummingbird flight physiology. , 2002, The Journal of experimental biology.

[54]  P. Williams,et al.  Toward a Blueprint for Conservation in Africa , 2001 .

[55]  Robert K. Colwell,et al.  Quantifying biodiversity: procedures and pitfalls in the measurement and comparison of species richness , 2001 .

[56]  G. Graves,et al.  Detection of macro-ecological patterns in South American hummingbirds is affected by spatial scale , 2000, Proceedings of the Royal Society of London. Series B: Biological Sciences.

[57]  J. Lawton Are there general laws in ecology , 1999 .

[58]  M. Zobel,et al.  The relative of species pools in determining plant species richness: an alternative explanation of species coexistence? , 1997, Trends in ecology & evolution.

[59]  N. Gotelli,et al.  NULL MODELS IN ECOLOGY , 1996 .

[60]  James H. Brown,et al.  Community Organization in Hummingbirds: Relationships Between Morphology and Ecology , 1985 .

[61]  N. Gotelli,et al.  Neotropical land-bridge avifaunas: new approaches to null hypotheses in biogeography , 1983 .

[62]  Daniel Simberloff,et al.  The Assembly of Species Communities: Chance or Competition? , 1979 .

[63]  Robert K. Colwell,et al.  Elevation and the Morphology, Flight Energetics, and Foraging Ecology of Tropical Hummingbirds , 1979, The American Naturalist.

[64]  Robert K. Colwell,et al.  Community Organization Among Neotropical Nectar-Feeding Birds , 1978 .

[65]  L. L. Wolf,et al.  Ecological Organization of a Tropical, Highland Hummingbird Community , 1976 .

[66]  J. Felsenstein Maximum-likelihood estimation of evolutionary trees from continuous characters. , 1973, American journal of human genetics.

[67]  H. Balslev,et al.  Separating environmental and geographical determinants of phylogenetic community structure in Amazonian palms (Arecaceae) , 2013 .

[68]  B. McEwen,et al.  Correction for “ Phylogenetic structure in tropical hummingbird communities , 2010 .

[69]  Luke J. Harmon,et al.  GEIGER: investigating evolutionary radiations , 2008, Bioinform..

[70]  Paul A. Keddy,et al.  Ecological assembly rules : perspectives, advances, retreats , 1999 .

[71]  F. James Rohlf,et al.  Biometry: The Principles and Practice of Statistics in Biological Research , 1969 .