Investigation of Early Events in FcεRI-Mediated Signaling Using a Detailed Mathematical Model1

Aggregation of FcεRI on mast cells and basophils leads to autophosphorylation and increased activity of the cytosolic protein tyrosine kinase Syk. We investigated the roles of the Src kinase Lyn, the immunoreceptor tyrosine-based activation motifs (ITAMs) on the β and γ subunits of FcεRI, and Syk itself in the activation of Syk. Our approach was to build a detailed mathematical model of reactions involving FcεRI, Lyn, Syk, and a bivalent ligand that aggregates FcεRI. We applied the model to experiments in which covalently cross-linked IgE dimers stimulate rat basophilic leukemia cells. The model makes it possible to test the consistency of mechanistic assumptions with data that alone provide limited mechanistic insight. For example, the model helps sort out mechanisms that jointly control dephosphorylation of receptor subunits. In addition, interpreted in the context of the model, experimentally observed differences between the β- and γ-chains with respect to levels of phosphorylation and rates of dephosphorylation indicate that most cellular Syk, but only a small fraction of Lyn, is available to interact with receptors. We also show that although the β ITAM acts to amplify signaling in experimental systems where its role has been investigated, there are conditions under which the β ITAM will act as an inhibitor.

[1]  J. Hopfield Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity. , 1974, Proceedings of the National Academy of Sciences of the United States of America.

[2]  H. Metzger,et al.  Dimeric immunoglobulin E serves as a unit signal for mast cell degranulation. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[3]  J. Kinet,et al.  Studies with a monoclonal antibody to the beta subunit of the receptor with high affinity for immunoglobulin E. , 1988, Molecular immunology.

[4]  M. Reth Antigen receptor tail clue , 1989, Nature.

[5]  P. V. von Hippel,et al.  Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.

[6]  A. Ullrich,et al.  SH2 domains prevent tyrosine dephosphorylation of the EGF receptor: identification of Tyr992 as the high‐affinity binding site for SH2 domains of phospholipase C gamma. , 1992, The EMBO journal.

[7]  J. Bolen,et al.  Engagement of the high-affinity IgE receptor activates src protein-related tyrosine kinases , 1992, Nature.

[8]  J. Hutchcroft,et al.  Fc epsilon RI-mediated tyrosine phosphorylation and activation of the 72-kDa protein-tyrosine kinase, PTK72, in RBL-2H3 rat tumor mast cells. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[9]  D. Conrad,et al.  Aggregation of IgE-receptor complexes on rat basophilic leukemia cells does not change the intrinsic affinity but can alter the kinetics of the ligand-IgE interaction. , 1992, Biochemistry.

[10]  W. Paul,et al.  Multichain immune recognition receptors: similarities in structure and signaling pathways. , 1992, Immunology today.

[11]  N. Ryba,et al.  Protein-tyrosine kinase p72syk in high affinity IgE receptor signaling. Identification as a component of pp72 and association with the receptor gamma chain after receptor aggregation. , 1993, The Journal of biological chemistry.

[12]  J. Schlessinger,et al.  Regulation of signal transduction and signal diversity by receptor oligomerization. , 1994, Trends in biochemical sciences.

[13]  J. Kinet,et al.  The high-affinity receptor for immunoglobulin E. , 1994, Chemical immunology.

[14]  B. Goldstein,et al.  Dynamics of signal transduction after aggregation of cell-surface receptors: studies on the type I receptor for IgE. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[15]  J. Kinet,et al.  Differential control of the tyrosine kinases Lyn and Syk by the two signaling chains of the high affinity immunoglobulin E receptor. , 1994, The Journal of biological chemistry.

[16]  H. Metzger,et al.  Aggregation of the high-affinity IgE receptor and enhanced activity of p53/56lyn protein-tyrosine kinase. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[17]  H. Metzger,et al.  Transphosphorylation as the mechanism by which the high-affinity receptor for IgE is phosphorylated upon aggregation. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[18]  H. Kihara,et al.  Src homology 2 domains of Syk and Lyn bind to tyrosine-phosphorylated subunits of the high affinity IgE receptor. , 1994, The Journal of biological chemistry.

[19]  B. Goldstein,et al.  Kinetics of Tyrosine Phosphorylation When IgE Dimers Bind to FCε Receptors on Rat Basophilic Leukemia Cells (*) , 1995, The Journal of Biological Chemistry.

[20]  T. McKeithan,et al.  Kinetic proofreading in T-cell receptor signal transduction. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[21]  A. Lanzavecchia,et al.  Serial triggering of many T-cell receptors by a few peptide–MHC complexes , 1995, Nature.

[22]  J. Bolen,et al.  Interaction of p72syk with the gamma and beta subunits of the high-affinity receptor for immunoglobulin E, Fc epsilon RI , 1995, Molecular and cellular biology.

[23]  J. Kinet,et al.  Reconstitution of interactions between tyrosine kinases and the high affinity IgE receptor which are controlled by receptor clustering. , 1995, The EMBO journal.

[24]  J. Cambier,et al.  Antigen and Fc receptor signaling. The awesome power of the immunoreceptor tyrosine-based activation motif (ITAM). , 1995, Journal of immunology.

[25]  J. Brugge,et al.  Clustering of Syk is sufficient to induce tyrosine phosphorylation and release of allergic mediators from rat basophilic leukemia cells , 1995, Molecular and cellular biology.

[26]  J. Kinet,et al.  The FcεRIβ Subunit Functions as an Amplifier of FcεRIγ-Mediated Cell Activation Signals , 1996, Cell.

[27]  Michael T. Heath,et al.  Scientific Computing , 2018 .

[28]  Z. Zhao,et al.  Interaction of phosphorylated FcepsilonRIgamma immunoglobulin receptor tyrosine activation motif-based peptides with dual and single SH2 domains of p72syk. Assessment of binding parameters and real time binding kinetics. , 1996, The Journal of biological chemistry.

[29]  H. Metzger,et al.  Biochemical Evidence That the Phosphorylated Tyrosines, Serines, and Threonines on the Aggregated High Affinity Receptor for IgE Are in the Immunoreceptor Tyrosine-based Activation Motifs* , 1997, The Journal of Biological Chemistry.

[30]  T. Yamamoto,et al.  Impaired tyrosine phosphorylation and Ca2+ mobilization, but not degranulation, in lyn-deficient bone marrow-derived mast cells. , 1997, Journal of immunology.

[31]  B. Goldstein,et al.  Shuttling of initiating kinase between discrete aggregates of the high affinity receptor for IgE regulates the cellular response. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[32]  J. Kinet,et al.  syk kinase activation by a src kinase-initiated activation loop phosphorylation chain reaction. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[33]  P. Dráber,et al.  Src family‐selective tyrosine kinase inhibitor, PP1, inhibits both FcεRI‐ and Thy‐1‐mediated activation of rat basophilic leukemia cells , 1997, European journal of immunology.

[34]  H. Metzger,et al.  Characterization of Protein-tyrosine Phosphatases That Dephosphorylate the High Affinity IgE Receptor* , 1997, The Journal of Biological Chemistry.

[35]  P. Tolar,et al.  Direct interaction of Syk and Lyn protein tyrosine kinases in rat basophilic leukemia cells activated via type I Fcε receptors , 1997 .

[36]  R. Geahlen,et al.  Syk Activation and Dissociation from the B-cell Antigen Receptor Is Mediated by Phosphorylation of Tyrosine 130* , 1997, The Journal of Biological Chemistry.

[37]  B. Goldstein,et al.  Exploiting the difference between intrinsic and extrinsic kinases: implications for regulation of signaling by immunoreceptors. , 1997, Journal of immunology.

[38]  L. Samelson,et al.  The product of the proto-oncogene c-cbl: a negative regulator of the Syk tyrosine kinase. , 1997, Science.

[39]  H. Metzger,et al.  The Unique Domain as the Site on Lyn Kinase for Its Constitutive Association with the High Affinity Receptor for IgE* , 1997, The Journal of Biological Chemistry.

[40]  R. Geahlen,et al.  Syk- and Lyn-dependent phosphorylation of Syk on multiple tyrosines following B cell activation includes a site that negatively regulates signaling. , 1998, Journal of immunology.

[41]  Teruaki Kimura,et al.  Mutations in the activation loop tyrosines of protein tyrosine kinase Syk abrogate intracellular signaling but not kinase activity. , 1998, Journal of immunology.

[42]  D. Dombrowicz,et al.  Allergy-associated FcRbeta is a molecular amplifier of IgE- and IgG-mediated in vivo responses. , 1998, Immunity.

[43]  J. Cambier,et al.  Asymmetrical phosphorylation and function of immunoreceptor tyrosine-based activation motif tyrosines in B cell antigen receptor signal transduction. , 1998, Journal of immunology.

[44]  H. Metzger,et al.  An unusual mechanism for ligand antagonism. , 1998, Science.

[45]  S. Shoelson,et al.  Tandem SH2 Domains Confer High Specificity in Tyrosine Kinase Signaling* , 1998, The Journal of Biological Chemistry.

[46]  J. Kinet,et al.  The high-affinity IgE receptor (Fc epsilon RI): from physiology to pathology. , 1999 .

[47]  B. Goldstein,et al.  One lyn molecule is sufficient to initiate phosphorylation of aggregated high-affinity IgE receptors. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[48]  G. Waksman,et al.  Thermodynamic study of the binding of the tandem-SH2 domain of the Syk kinase to a dually phosphorylated ITAM peptide: evidence for two conformers. , 1999, Biochemistry.

[49]  B. Baird,et al.  Membrane organization in immunoglobulin E receptor signaling. , 1999, Current opinion in chemical biology.

[50]  Jill P. Mesirov,et al.  Computational Biology , 2018, Encyclopedia of Parallel Computing.

[51]  Alan S. Perelson,et al.  Quantifying Aggregation of IgE-FcϵRI by Multivalent Antigen , 1999 .

[52]  J. Oliver,et al.  Lyn Dissociation from Phosphorylated FcεRI Subunits: A New Regulatory Step in the FcεRI Signaling Cascade Revealed by Studies of FcεRI Dimer Signaling Activity , 1999, The Journal of Immunology.

[53]  R. Burton,et al.  Substrate Recognition by the Lyn Protein-tyrosine Kinase , 2000, The Journal of Biological Chemistry.

[54]  M. Okada,et al.  Sequential Requirements of the N-Terminal Palmitoylation Site and SH2 Domain of Src Family Kinases in the Initiation and Progression of FcɛRI Signaling , 2000, Molecular and Cellular Biology.

[55]  M. Nadler,et al.  Signal transduction by the high-affinity immunoglobulin E receptor Fc epsilon RI: coupling form to function. , 2000, Advances in immunology.

[56]  M. Lefranc,et al.  Characterisation and specificity of two single-chain Fv antibodies directed to the protein tyrosine kinase Syk. , 2000, Journal of immunological methods.

[57]  T. Hunter,et al.  Signaling—2000 and Beyond , 2000, Cell.

[58]  Bridget S. Wilson,et al.  Observing Fcεri Signaling from the Inside of the Mast Cell Membrane , 2000, The Journal of cell biology.

[59]  Randall L. Kincaid,et al.  Phosphorylation of Syk Activation Loop Tyrosines Is Essential for Syk Function , 2000, The Journal of Biological Chemistry.

[60]  R. Germain The T Cell Receptor for Antigen: Signaling and Ligand Discrimination* , 2001, The Journal of Biological Chemistry.

[61]  B. Goldstein,et al.  Calculations show substantial serial engagement of T cell receptors. , 2001, Biophysical journal.

[62]  H. Metzger,et al.  Unexpected signals in a system subject to kinetic proofreading , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[63]  H. Metzger,et al.  Interaction between the Unphosphorylated Receptor with High Affinity for IgE and Lyn Kinase* , 2001, The Journal of Biological Chemistry.

[64]  B. Baird,et al.  FcϵRI as a paradigm for a lipid raft-dependent receptor in hematopoietic cells , 2001 .

[65]  William S. Hlavacek,et al.  Kinetic proofreading models for cell signaling predict ways to escape kinetic proofreading , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[66]  Bridget S. Wilson,et al.  High resolution mapping of mast cell membranes reveals primary and secondary domains of FcεRI and LAT , 2001, The Journal of cell biology.

[67]  J. Rivera,et al.  Structure-Function Analysis of Lyn Kinase Association with Lipid Rafts and Initiation of Early Signaling Events after Fcɛ Receptor I Aggregation , 2001, Molecular and Cellular Biology.

[68]  J. Rivera,et al.  A Perspective: Regulation of IgE Receptor-Mediated Mast Cell Responses by a LAT-Organized Plasma Membrane-Localized Signaling Complex , 2001, International Archives of Allergy and Immunology.

[69]  S. Jameson,et al.  The impact of duration versus extent of TCR occupancy on T cell activation: a revision of the kinetic proofreading model. , 2001, Immunity.

[70]  K. Sada,et al.  Protein tyrosine kinase Syk in mast cell signaling. , 2002, Molecular immunology.

[71]  Byron Goldstein,et al.  Kinetic proofreading in receptor-mediated transduction of cellular signals: Receptor aggregation, partially activated receptors, and cytosolic messengers , 2002, Bulletin of mathematical biology.

[72]  Marietta L. Harrison,et al.  Regulation of Signaling in B Cells through the Phosphorylation of Syk on Linker Region Tyrosines , 2002, The Journal of Biological Chemistry.

[73]  P. Swain,et al.  The role of proofreading in signal transduction specificity. , 2002, Biophysical journal.

[74]  J. O’Shea,et al.  Fyn kinase initiates complementary signals required for IgE-dependent mast cell degranulation , 2002, Nature Immunology.

[75]  Daniel Coombs,et al.  Supplementary information for Activated TCRs remain marked for internalization after dissociation from pMHC , 2022 .

[76]  I. Reischl,et al.  Quantitative aspects of signal transduction by the receptor with high affinity for IgE. , 2002, Molecular immunology.

[77]  William S. Hlavacek,et al.  Modeling the early signaling events mediated by FcepsilonRI. , 2002, Molecular immunology.