Statistical shape model reconstruction with sparse anomalous deformations: Application to intervertebral disc herniation

Many medical image processing techniques rely on accurate shape modeling of anatomical features. The presence of shape abnormalities challenges traditional processing algorithms based on strong morphological priors. In this work, a sparse shape reconstruction from a statistical shape model is presented. It combines the advantages of traditional statistical shape models (defining a 'normal' shape space) and previously presented sparse shape composition (providing localized descriptors of anomalies). The algorithm was incorporated into our image segmentation and classification software. Evaluation was performed on simulated and clinical MRI data from 22 sciatica patients with intervertebral disc herniation, containing 35 herniated and 97 normal discs. Moderate to high correlation (R=0.73) was achieved between simulated and detected herniations. The sparse reconstruction provided novel quantitative features describing the herniation morphology and MRI signal appearance in three dimensions (3D). The proposed descriptors of local disc morphology resulted to the 3D segmentation accuracy of 1.07±1.00mm (mean absolute vertex-to-vertex mesh distance over the posterior disc region), and improved the intervertebral disc classification from 0.888 to 0.931 (area under receiver operating curve). The results show that the sparse shape reconstruction may improve computer-aided diagnosis of pathological conditions presenting local morphological alterations, as seen in intervertebral disc herniation.

[1]  Vipin Chaudhary,et al.  A Supervised Approach Towards Segmentation of Clinical MRI for Automatic Lumbar Diagnosis , 2014 .

[2]  Nadia Magnenat-Thalmann,et al.  Medical image analysis , 1999, Medical Image Anal..

[3]  Jason J. Corso,et al.  Lumbar Spine Disc Herniation Diagnosis with a Joint Shape Model , 2014 .

[4]  Xiaoming Huo,et al.  Uncertainty principles and ideal atomic decomposition , 2001, IEEE Trans. Inf. Theory.

[5]  Stuart Crozier,et al.  Research and applications: Three-dimensional morphological and signal intensity features for detection of intervertebral disc degeneration from magnetic resonance images , 2013, J. Am. Medical Informatics Assoc..

[6]  Dinggang Shen,et al.  Hierarchical active shape models, using the wavelet transform , 2003, IEEE Transactions on Medical Imaging.

[7]  Hans-Peter Meinzer,et al.  Statistical shape models for 3D medical image segmentation: A review , 2009, Medical Image Anal..

[8]  Dinggang Shen,et al.  Spatial normalization of spine MR images for statistical correlation of lesions with clinical symptoms. , 2002, Radiology.

[9]  Jason J. Corso,et al.  Automatic diagnosis of lumbar disc herniation with shape and appearance features from MRI , 2010, Medical Imaging.

[10]  Christopher J. Taylor,et al.  Groupwise surface correspondence by optimization: Representation and regularization , 2008, Medical Image Anal..

[11]  Lixu Gu,et al.  A homotopy-based sparse representation for fast and accurate shape prior modeling in liver surgical planning , 2015, Medical Image Anal..

[12]  Richard F Costello,et al.  Nomenclature and standard reporting terminology of intervertebral disk herniation. , 2007, Magnetic resonance imaging clinics of North America.

[13]  Marc Teboulle,et al.  A Fast Iterative Shrinkage-Thresholding Algorithm for Linear Inverse Problems , 2009, SIAM J. Imaging Sci..

[14]  Lixu Gu,et al.  A new segmentation framework based on sparse shape composition in liver surgery planning system. , 2013, Medical physics.

[15]  Bostjan Likar,et al.  Parametric modeling of the intervertebral disc space in 3D: Application to CT images of the lumbar spine , 2014, Comput. Medical Imaging Graph..

[16]  Nadia Magnenat-Thalmann,et al.  Robust statistical shape models for MRI bone segmentation in presence of small field of view , 2011, Medical Image Anal..

[17]  Junzhou Huang,et al.  Composite splitting algorithms for convex optimization , 2011, Comput. Vis. Image Underst..

[18]  D. Fardon,et al.  Nomenclature and classification of lumbar disc pathology. , 2001, Spine.

[19]  Yanrong Guo,et al.  Active learning based intervertebral disk classification combining shape and texture similarities , 2013, Neurocomputing.

[20]  Farida Cheriet,et al.  Texture Analysis for Automatic Segmentation of Intervertebral Disks of Scoliotic Spines From MR Images , 2009, IEEE Transactions on Information Technology in Biomedicine.

[21]  Jason J. Corso,et al.  Toward a clinical lumbar CAD: herniation diagnosis , 2010, International Journal of Computer Assisted Radiology and Surgery.

[22]  Dimitris N. Metaxas,et al.  Deformable segmentation via sparse representation and dictionary learning , 2012, Medical Image Anal..

[23]  Rüdiger Dillmann,et al.  A Knowledge-Based Approach to Soft Tissue Reconstruction of the Cervical Spine , 2009, IEEE Transactions on Medical Imaging.

[24]  Stuart Crozier,et al.  Automated bone segmentation from large field of view 3D MR images of the hip joint , 2013, Physics in medicine and biology.

[25]  Shuo Li,et al.  Intervertebral disc segmentation in MR images using anisotropic oriented flux , 2013, Medical Image Anal..

[26]  Jason J. Corso,et al.  Labeling of Lumbar Discs Using Both Pixel- and Object-Level Features With a Two-Level Probabilistic Model , 2011, IEEE Transactions on Medical Imaging.

[27]  J. Gower Generalized procrustes analysis , 1975 .

[28]  G. J. Verkerke,et al.  Geometry of the Intervertebral Volume and Vertebral Endplates of the Human Spine , 2009, Annals of Biomedical Engineering.

[29]  Lena Costaridou,et al.  Atlas-Based Segmentation of Degenerated Lumbar Intervertebral Discs From MR Images of the Spine , 2009, IEEE Transactions on Biomedical Engineering.

[30]  S Crozier,et al.  Automated detection, 3D segmentation and analysis of high resolution spine MR images using statistical shape models , 2012, Physics in medicine and biology.

[31]  Stuart Crozier,et al.  Validity and reliability of computerized measurement of lumbar intervertebral disc height and volume from magnetic resonance images. , 2014, The spine journal : official journal of the North American Spine Society.

[32]  Vipin Chaudhary,et al.  Composite features for automatic diagnosis of intervertebral disc herniation from lumbar MRI , 2011, 2011 Annual International Conference of the IEEE Engineering in Medicine and Biology Society.

[33]  Robert M. Haralick,et al.  Textural Features for Image Classification , 1973, IEEE Trans. Syst. Man Cybern..

[34]  D. Fardon,et al.  Nomenclature and classification of lumbar disc pathology. Recommendations of the Combined task Forces of the North American Spine Society, American Society of Spine Radiology, and American Society of Neuroradiology. , 2001, Spine.

[35]  Junzhou Huang,et al.  Towards robust and effective shape modeling: Sparse shape composition , 2012, Medical Image Anal..

[36]  Vipin Chaudhary,et al.  Computer-aided diagnosis for lumbar mri using heterogeneous classifiers , 2011, 2011 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[37]  Michael Elad,et al.  Submitted to Ieee Transactions on Image Processing Image Decomposition via the Combination of Sparse Representations and a Variational Approach , 2022 .

[38]  Timothy F. Cootes,et al.  Active Shape Models-Their Training and Application , 1995, Comput. Vis. Image Underst..

[39]  Vipin Chaudhary,et al.  Supervised methods for detection and segmentation of tissues in clinical lumbar MRI , 2014, Comput. Medical Imaging Graph..

[40]  Jufu Feng,et al.  Sparse Representation Shape Models , 2012, Journal of Mathematical Imaging and Vision.

[41]  Allen Y. Yang,et al.  Robust Face Recognition via Sparse Representation , 2009, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[42]  Ming Dar Tsai,et al.  A new method for lumbar herniated inter-vertebral disc diagnosis based on image analysis of transverse sections. , 2002, Computerized medical imaging and graphics : the official journal of the Computerized Medical Imaging Society.

[43]  Yang Yu,et al.  Deformable models with sparsity constraints for cardiac motion analysis , 2014, Medical Image Anal..

[44]  R. Tibshirani Regression Shrinkage and Selection via the Lasso , 1996 .

[45]  Rasmus Larsen,et al.  Sparse Decomposition and Modeling of Anatomical Shape Variation , 2007, IEEE Transactions on Medical Imaging.

[46]  R. Tibshirani,et al.  Least angle regression , 2004, math/0406456.

[47]  Stuart Crozier,et al.  Focused shape models for hip joint segmentation in 3D magnetic resonance images , 2014, Medical Image Anal..

[48]  Dorin Comaniciu,et al.  Spine detection in CT and MR using iterated marginal space learning , 2013, Medical Image Anal..

[49]  Yaozong Gao,et al.  Hierarchical Lung Field Segmentation With Joint Shape and Appearance Sparse Learning , 2014, IEEE Transactions on Medical Imaging.

[50]  Ayse Betül Oktay,et al.  Simultaneous Localization of Lumbar Vertebrae and Intervertebral Discs With SVM-Based MRF , 2013, IEEE Transactions on Biomedical Engineering.

[51]  Michael A. Saunders,et al.  Atomic Decomposition by Basis Pursuit , 1998, SIAM J. Sci. Comput..

[52]  Isaac N. Bankman,et al.  Handbook of medical image processing and analysis , 2009 .

[53]  L. R. Dice Measures of the Amount of Ecologic Association Between Species , 1945 .

[54]  B. van Ginneken,et al.  Computer-aided diagnosis: how to move from the laboratory to the clinic. , 2011, Radiology.

[55]  John Wright,et al.  RASL: Robust Alignment by Sparse and Low-Rank Decomposition for Linearly Correlated Images , 2012, IEEE Trans. Pattern Anal. Mach. Intell..

[56]  Timothy F. Cootes,et al.  3D Statistical Shape Models Using Direct Optimisation of Description Length , 2002, ECCV.