Genomic history and ecology of the geographic spread of rice
暂无分享,去创建一个
R. Kyle Bocinsky | Olivia W. Wilkins | M. Purugganan | M. Oliveira | D. Fuller | J. Choi | J. Lasky | S. Negrão | C. Castillo | Simon C. Groen | Rafal M. Gutaker | E. Bellis | I. Pires | E. Slayton | J. D. Guedes | Olivia Wilkins | J. Y. Choi
[1] Benjamin S. Arbuckle,et al. Ancient cattle genomics, origins, and rapid turnover in the Fertile Crescent , 2019, Science.
[2] Erich Schubert,et al. Faster k-Medoids Clustering: Improving the PAM, CLARA, and CLARANS Algorithms , 2018, SISAP.
[3] T. Higham,et al. Social responses to climate change in Iron Age north-east Thailand: new archaeobotanical evidence , 2018, Antiquity.
[4] R. Kyle Bocinsky,et al. Climate change stimulated agricultural innovation and exchange across Asia , 2018, Science Advances.
[5] Marie-Josée Fortin,et al. Optimizing the choice of a spatial weighting matrix in eigenvector-based methods. , 2018, Ecology.
[6] D. Fuller,et al. A tale of two rice varieties: Modelling the prehistoric dispersals of japonica and proto-indica rices , 2018, The Holocene.
[7] T. Higham,et al. Early agriculture at the crossroads of China and Southeast Asia: Archaeobotanical evidence and radiocarbon dates from Baiyangcun, Yunnan , 2018, Journal of Archaeological Science: Reports.
[8] S. Rasmussen,et al. The prehistoric peopling of Southeast Asia , 2018, Science.
[9] Kenneth L. McNally,et al. Genomic variation in 3,010 diverse accessions of Asian cultivated rice , 2018, Nature.
[10] D. Petkova,et al. Genetic Landscapes Reveal How Human Genetic Diversity Aligns with Geography , 2018, bioRxiv.
[11] D. Reich,et al. Ancient genomes document multiple waves of migration in Southeast Asian prehistory , 2018, Science.
[12] M. Purugganan,et al. Multiple Origin but Single Domestication Led to Oryza sativa , 2018, G3: Genes, Genomes, Genetics.
[13] S. Cushman,et al. A comparison of regression methods for model selection in individual‐based landscape genetic analysis , 2018, Molecular ecology resources.
[14] R. Allaby,et al. Geographic mosaics and changing rates of cereal domestication , 2017, Philosophical Transactions of the Royal Society B: Biological Sciences.
[15] M. Purugganan,et al. Evolutionary Epigenomics of Retrotransposon-Mediated Methylation Spreading in Rice , 2017, Molecular biology and evolution.
[16] D. Fuller,et al. New radiocarbon evidence on early rice consumption and farming in South China , 2017 .
[17] Mirco Boschetti,et al. RiceAtlas, a spatial database of global rice calendars and production , 2017, Scientific Data.
[18] Yan Li,et al. Sequencing and de novo assembly of a near complete indica rice genome , 2017, Nature Communications.
[19] Paolo Di Tommaso,et al. Nextflow enables reproducible computational workflows , 2017, Nature Biotechnology.
[20] J. Etten. R Package gdistance: Distances and Routes on Geographical Grids , 2017 .
[21] Thomas Mailund,et al. admixturegraph: an R package for admixture graph manipulation and fitting , 2017, Bioinform..
[22] Peter Bellwood,et al. Hunter-gatherer specialization in the late Neolithic of southern Vietnam – The case of Rach Nui , 2017, Quaternary International.
[23] R. Wing,et al. The Rice Paradox: Multiple Origins but Single Domestication in Asian Rice , 2017, Molecular biology and evolution.
[24] Yun S. Song,et al. Robust and scalable inference of population history from hundreds of unphased whole genomes , 2016, Nature Genetics.
[25] D. Fuller,et al. Pathways of Rice Diversification across Asia , 2016 .
[26] D. Fuller,et al. How rice failed to unify Asia: Globalization and regionalism of early farming traditions in the monsoon world , 2016 .
[27] T. Hodos. The Routledge Handbook of Archaeology and Globalization , 2016 .
[28] A. Greenberg,et al. Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice , 2016, Rice.
[29] D. Fuller,et al. Rice, beans and trade crops on the early maritime Silk Route in Southeast Asia , 2016, Antiquity.
[30] Olaf Conrad,et al. Climatologies at high resolution for the earth’s land surface areas , 2016, Scientific Data.
[31] Yuhong Wang,et al. The abrupt climate change near 4,400 yr BP on the cultural transition in Yuchisi, China and its global linkage , 2016, Scientific Reports.
[32] M. Hudson,et al. An extraordinary case in human history: Prehistoric hunter-gatherer adaptation to the islands of the Central Ryukyus (Amami and Okinawa archipelagos), Japan , 2016 .
[33] Kenneth L. McNally,et al. Open access resources for genome-wide association mapping in rice , 2016, Nature Communications.
[34] D. Fuller,et al. From Early Domesticated Rice of the Middle Yangtze Basin to Millet, Rice and Wheat Agriculture: Archaeobotanical Macro-Remains from Baligang, Nanyang Basin, Central China (6700–500 BC) , 2015, PloS one.
[35] C. Higham. Debating a great site: Ban Non Wat and the wider prehistory of Southeast Asia , 2015, Antiquity.
[36] Dorian Q. Fuller,et al. Modelling the Geographical Origin of Rice Cultivation in Asia Using the Rice Archaeological Database , 2015, PloS one.
[37] T. Juenger,et al. Genome-environment associations in sorghum landraces predict adaptive traits , 2015, Science Advances.
[38] R. Kyle Bocinsky,et al. The Impact of Climate on the Spread of Rice to North-Eastern China: A New Look at the Data from Shandong Province , 2015, PloS one.
[39] R. Hijmans,et al. Soil quality and constraints in global rice production , 2014 .
[40] Matthew Stephens,et al. Visualizing spatial population structure with estimated effective migration surfaces , 2014, Nature Genetics.
[41] E. Butler,et al. Modeling constraints on the spread of agriculture to Southwest China with thermal niche models , 2014 .
[42] Carson C Chow,et al. Second-generation PLINK: rising to the challenge of larger and richer datasets , 2014, GigaScience.
[43] William E. Peterman,et al. ResistanceGA: An R package for the optimization of resistance surfaces using genetic algorithms , 2014, bioRxiv.
[44] Jun Wang,et al. The 3,000 rice genomes project: new opportunities and challenges for future rice research , 2014, GigaScience.
[45] R. D. Semlitsch,et al. Ecological resistance surfaces predict fine‐scale genetic differentiation in a terrestrial woodland salamander , 2014, Molecular ecology.
[46] Rachel S. Meyer,et al. Evolution of crop species: genetics of domestication and diversification , 2013, Nature Reviews Genetics.
[47] Mauricio O. Carneiro,et al. From FastQ Data to High‐Confidence Variant Calls: The Genome Analysis Toolkit Best Practices Pipeline , 2013, Current protocols in bioinformatics.
[48] Xiaohong Wu,et al. Site of Baodun yields earliest evidence for the spread of rice and foxtail millet agriculture to south-west China , 2013, Antiquity.
[49] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[50] Shaun A Marcott,et al. A Reconstruction of Regional and Global Temperature for the Past 11,300 Years , 2013, Science.
[51] Y. Fan,et al. Global Patterns of Groundwater Table Depth , 2013, Science.
[52] T. Juenger,et al. Characterizing genomic variation of Arabidopsis thaliana: the roles of geography and climate , 2012, Molecular ecology.
[53] Swapan Mallick,et al. Ancient Admixture in Human History , 2012, Genetics.
[54] A. Fujiyama,et al. A map of rice genome variation reveals the origin of cultivated rice , 2012, Nature.
[55] H. Weiss,et al. Formal subdivision of the Holocene Series/Epoch: a Discussion Paper by a Working Group of INTIMATE (Integration of ice‐core, marine and terrestrial records) and the Subcommission on Quaternary Stratigraphy (International Commission on Stratigraphy) , 2012 .
[56] Richard C. H. Connor,et al. A Multivariate Correlation Distance for Vector Spaces , 2012, SISAP.
[57] D. Fuller. Pathways to Asian Civilizations: Tracing the Origins and Spread of Rice and Rice Cultures , 2011, Rice.
[58] G. Feinman,et al. Dietary adaptation during the Longshan period in China: stable isotope analyses at Liangchengzhen (southeastern Shandong) , 2011 .
[59] R. Hijmans,et al. The contribution of rice agriculture and livestock pastoralism to prehistoric methane levels , 2011 .
[60] M. Kummu,et al. How Close Do We Live to Water? A Global Analysis of Population Distance to Freshwater Bodies , 2011, PloS one.
[61] Heng Li,et al. Tabix: fast retrieval of sequence features from generic TAB-delimited files , 2011, Bioinform..
[62] Sung–Mo Ahn. The emergence of rice agriculture in Korea: archaeobotanical perspectives , 2010 .
[63] David H. Alexander,et al. Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.
[64] Ambra Calo. The Distribution of Bronze Drums in Early Southeast Asia: Trade Routes and Cultural Spheres , 2009 .
[65] D. Fuller,et al. The Domestication Process and Domestication Rate in Rice: Spikelet Bases from the Lower Yangtze , 2009, Science.
[66] D. Fuller,et al. Water management and labour in the origins and dispersal of Asian rice , 2009 .
[67] Dorian Q. Fuller,et al. The nature of selection during plant domestication , 2009, Nature.
[68] Antonio Trabucco,et al. Climate change mitigation: a spatial analysis of global land suitability for Clean Development Mechanism afforestation and reforestation , 2008 .
[69] J. Manton,et al. Ancient jades map 3,000 years of prehistoric exchange in Southeast Asia , 2007, Proceedings of the National Academy of Sciences.
[70] B. Browning,et al. Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. , 2007, American journal of human genetics.
[71] Manuel A. R. Ferreira,et al. PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.
[72] P. Legendre,et al. Variation partitioning of species data matrices: estimation and comparison of fractions. , 2006, Ecology.
[73] N. Maxted,et al. Defining and identifying crop landraces , 2005, Plant Genetic Resources.
[74] Richard M Bruskiewich,et al. The International Rice Information System. A Platform for Meta-Analysis of Rice Crop Data , 2005, Plant Physiology.
[75] Loukas Barton,et al. Climate change and cultural response around 4000 cal yr B.P. in the western part of Chinese Loess Plateau , 2005, Quaternary Research.
[76] G. Crawford,et al. Agricultural origins in the Korean Peninsula , 2003, Antiquity.
[77] Peter Rothery,et al. Confidence limits for regression relationships between distance matrices: Estimating gene flow with distance , 2002 .
[78] Global Soil Data Task,et al. Global Gridded Surfaces of Selected Soil Characteristics (IGBP-DIS) , 2000 .
[79] Y. Sano,et al. A single base change altered the regulation of the Waxy gene at the posttranscriptional level during the domestication of rice. , 1998, Molecular biology and evolution.
[80] C. Higham. The Bronze Age of Southeast Asia , 1997 .
[81] M T Clegg,et al. Substitution rate comparisons between grasses and palms: synonymous rate differences at the nuclear gene Adh parallel rate differences at the plastid gene rbcL. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[82] Cort J. Willmott,et al. GLOBAL DISTRIBUTION OF PLANT‐EXTRACTABLE WATER CAPACITY OF SOIL , 1996 .
[83] A. Gibbons. How the akkadian empire was hung out to dry. , 1993, Science.
[84] W. Tobler,et al. Three Presentations on Geographical Analysis and Modeling: Non- Isotropic Geographic Modeling; Speculations on the Geometry of Geography; and Global Spatial Analysis (93-1) , 1993 .
[85] L. Excoffier,et al. Analysis of molecular variance inferred from metric distances among DNA haplotypes: application to human mitochondrial DNA restriction data. , 1992, Genetics.
[86] Simon H Bickler,et al. Voyaging by canoe and computer: experiments in the settlement of the Pacific Ocean , 1990, Antiquity.
[87] P. Rousseeuw. Silhouettes: a graphical aid to the interpretation and validation of cluster analysis , 1987 .
[88] J. Glaszmann. Isozymes and classification of Asian rice varieties , 1987, Theoretical and Applied Genetics.
[89] J. Harlan. Our vanishing genetic resources. , 1975, Science.
[90] H. Akaike. A new look at the statistical model identification , 1974 .
[91] Peel Park Avenue,et al. Archaeological Assessment , 2021, Encyclopedic Dictionary of Archaeology.
[92] E. Slayton,et al. Seascape corridors : modeling routes to connect communities across the Caribbean Sea , 2018 .
[93] T. Schmitz. Least Cost Analysis Of Social Landscapes Archaeological Case Studies , 2016 .
[94] Jari Oksanen,et al. Vegan: an introduction to ordination , 2015 .
[95] R Core Team,et al. R: A language and environment for statistical computing. , 2014 .
[96] Agma J. M. Traina,et al. Proceedings of the 7th International Conference on Similarity Search and Applications - SISAP , 2014 .
[97] Hadley Wickham,et al. ggmap: Spatial Visualization with ggplot2 , 2013, R J..
[98] Devin White,et al. Least Cost Analysis of Social Landscapes: Archaeological Case Studies , 2012 .
[99] J. Vijg,et al. Epigenetic factors in aging and longevity , 2009, Pflügers Archiv - European Journal of Physiology.
[100] Antonio Trabucco,et al. Trees and water: smallholder agroforestry on irrigated lands in Northern India , 2007 .
[102] Peter J. Rousseeuw,et al. Clustering by means of medoids , 1987 .
[103] R. Huke. Rice area by type of culture, South, Southeast, and East Asia , 1982 .
[104] K. Mardia. Some properties of clasical multi-dimesional scaling , 1978 .
[105] E. Zürcher. The Buddhist conquest of China , 1959 .