ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization
暂无分享,去创建一个
Shiow-Fen Hwang | Shinn-Ying Ho | Chun-Wei Tung | Wen-Lin Huang | Shih-Wen Ho | Shinn-Ying Ho | Shiow-Fen Hwang | Wen-Lin Huang | C. Tung | Shih-Wen Ho | S. Ho
[1] Alex Lewin,et al. BMC Bioinformatics BioMed Central Methodology article Grouping Gene Ontology terms to improve the assessment of gene set enrichment in microarray data , 2006 .
[2] Hansoo Lee,et al. Amiloride potentiates TRAIL-induced tumor cell apoptosis by intracellular acidification-dependent Akt inactivation. , 2005, Biochemical and biophysical research communications.
[3] Jenn-Kang Hwang,et al. Predicting subcellular localization of proteins for Gram‐negative bacteria by support vector machines based on n‐peptide compositions , 2004, Protein science : a publication of the Protein Society.
[4] Shinn-Ying Ho,et al. Intelligent evolutionary algorithms for large parameter optimization problems , 2004, IEEE Trans. Evol. Comput..
[5] Ying Huang,et al. Prediction of protein subcellular locations using fuzzy k-NN method , 2004, Bioinform..
[6] K. Chou,et al. Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization. , 2006, Biochemical and biophysical research communications.
[7] Minoru Kanehisa,et al. Prediction of protein subcellular locations by support vector machines using compositions of amino acids and amino acid pairs , 2003, Bioinform..
[8] Arun Krishnan,et al. pSLIP: SVM based protein subcellular localization prediction using multiple physicochemical properties , 2005, BMC Bioinformatics.
[9] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[10] Tao Li,et al. A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression , 2004, Bioinform..
[11] Robert Stevens,et al. Protein classification using ontology classification , 2006, ISMB.
[12] K. Chou,et al. Support vector machines for prediction of protein subcellular location by incorporating quasi‐sequence‐order effect , 2002, Journal of cellular biochemistry.
[13] Shinn-Ying Ho,et al. Inheritable genetic algorithm for biobjective 0/1 combinatorial optimization problems and its applications , 2004, IEEE Trans. Syst. Man Cybern. Part B.
[14] Shiow-Fen Hwang,et al. ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features , 2007, Biosyst..
[15] M. Bhasin,et al. Support Vector Machine-based Method for Subcellular Localization of Human Proteins Using Amino Acid Compositions, Their Order, and Similarity Search* , 2005, Journal of Biological Chemistry.
[16] Shiow-Fen Hwang,et al. Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method , 2007, Biosyst..
[17] Kuo-Chen Chou,et al. Predicting eukaryotic protein subcellular location by fusing optimized evidence-theoretic K-Nearest Neighbor classifiers. , 2006, Journal of proteome research.
[18] Yang Dai,et al. Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction , 2006, BMC Bioinformatics.
[19] Yu-Dong Cai,et al. A novel computational method to predict transcription factor DNA binding preference. , 2006, Biochemical and biophysical research communications.
[20] Zhirong Sun,et al. Support vector machine approach for protein subcellular localization prediction , 2001, Bioinform..
[21] Michael R. Thon,et al. Identifying clusters of functionally related genes in genomes , 2007, Bioinform..
[22] James M. Keller,et al. Fuzzy Measures on the Gene Ontology for Gene Product Similarity , 2006, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[23] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[24] Shinn-Ying Ho,et al. POPI: predicting immunogenicity of MHC class I binding peptides by mining informative physicochemical properties , 2007, Bioinform..
[25] S. Brunak,et al. Predicting subcellular localization of proteins based on their N-terminal amino acid sequence. , 2000, Journal of molecular biology.
[26] M. Stone. Cross‐Validatory Choice and Assessment of Statistical Predictions , 1976 .
[27] Zhiyong Lu,et al. GO Molecular Function Terms Are Predictive of Subcellular Localization , 2004, Pacific Symposium on Biocomputing.
[28] Cathy H. Wu,et al. UniProt: the Universal Protein knowledgebase , 2004, Nucleic Acids Res..
[29] Emily Dimmer,et al. The Gene Ontology Annotation (GOA) Database: sharing knowledge in Uniprot with Gene Ontology , 2004, Nucleic Acids Res..
[30] Chih-Hung Hsieh,et al. Interpretable gene expression classifier with an accurate and compact fuzzy rule base for microarray data analysis. , 2006, Bio Systems.
[31] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[32] James M. Keller,et al. A fuzzy K-nearest neighbor algorithm , 1985, IEEE Transactions on Systems, Man, and Cybernetics.
[33] K Nishikawa,et al. Discrimination of intracellular and extracellular proteins using amino acid composition and residue-pair frequencies. , 1994, Journal of molecular biology.
[34] Gajendra P. S. Raghava,et al. ESLpred: SVM-based method for subcellular localization of eukaryotic proteins using dipeptide composition and PSI-BLAST , 2004, Nucleic Acids Res..
[35] Guoli Wang,et al. PISCES: a protein sequence culling server , 2003, Bioinform..
[36] P. Aloy,et al. Relation between amino acid composition and cellular location of proteins. , 1997, Journal of molecular biology.
[37] Kuo-Chen Chou,et al. Predicting protein subnuclear location with optimized evidence-theoretic K-nearest classifier and pseudo amino acid composition. , 2005, Biochemical and biophysical research communications.
[38] Gajendra P. S. Raghava,et al. PSLpred: prediction of subcellular localization of bacterial proteins , 2005, Bioinform..
[39] Loris Nanni,et al. An ensemble of K-local hyperplanes for predicting protein-protein interactions , 2006, Bioinform..
[40] Shinn-Ying Ho,et al. Intelligent evolutionary algorithms for large parameter optimization problems , 2004, IEEE Transactions on Evolutionary Computation.
[41] K. Nakai,et al. PSORT: a program for detecting sorting signals in proteins and predicting their subcellular localization. , 1999, Trends in biochemical sciences.
[42] K. Chou,et al. Euk-mPLoc: a fusion classifier for large-scale eukaryotic protein subcellular location prediction by incorporating multiple sites. , 2007, Journal of proteome research.
[43] Vladimir Pavlovic,et al. Protein classification using probabilistic chain graphs and the Gene Ontology structure , 2006, Bioinform..