A framework of integrating gene relations from heterogeneous data sources: an experiment on Arabidopsis thaliana
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Hsinchun Chen | Jiexun Li | Xin Li | Hua Su | David W. Galbraith | Hsinchun Chen | D. Galbraith | Hua Su | Jiexun Li | Xin Li
[1] T. Sun,et al. The Arabidopsis GA1 locus encodes the cyclase ent-kaurene synthetase A of gibberellin biosynthesis. , 1994, The Plant cell.
[2] Y. Kamiya,et al. Gibberellin dose-response regulation of GA4 gene transcript levels in Arabidopsis. , 1998, Plant physiology.
[3] D. Eisenberg,et al. Detecting protein function and protein-protein interactions from genome sequences. , 1999, Science.
[4] D. Eisenberg,et al. A combined algorithm for genome-wide prediction of protein function , 1999, Nature.
[5] D. Eisenberg,et al. Assigning protein functions by comparative genome analysis: protein phylogenetic profiles. , 1999, Proceedings of the National Academy of Sciences of the United States of America.
[6] C. Helliwell,et al. Arabidopsis ent-kaurene oxidase catalyzes three steps of gibberellin biosynthesis. , 1999, Plant physiology.
[7] James R. Knight,et al. A comprehensive analysis of protein–protein interactions in Saccharomyces cerevisiae , 2000, Nature.
[8] Michal Linial,et al. Using Bayesian Networks to Analyze Expression Data , 2000, J. Comput. Biol..
[9] T. Jenssen,et al. A literature network of human genes for high-throughput analysis of gene expression , 2001, Nature Genetics.
[10] C. DeLisi,et al. The society of genes: networks of functional links between genes from comparative genomics , 2002, Genome Biology.
[11] M. Eisen,et al. Exploring the conditional coregulation of yeast gene expression through fuzzy k-means clustering , 2002, Genome Biology.
[12] P. Bork,et al. Functional organization of the yeast proteome by systematic analysis of protein complexes , 2002, Nature.
[13] S. Rhee,et al. AraCyc: A Biochemical Pathway Database for Arabidopsis1 , 2003, Plant Physiology.
[14] A. Owen,et al. A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae) , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[15] Darren A. Natale,et al. The COG database: an updated version includes eukaryotes , 2003, BMC Bioinformatics.
[16] Christian von Mering,et al. STRING: a database of predicted functional associations between proteins , 2003, Nucleic Acids Res..
[17] M. Gerstein,et al. A Bayesian Networks Approach for Predicting Protein-Protein Interactions from Genomic Data , 2003, Science.
[18] G. Sumara,et al. A Probabilistic Functional Network of Yeast Genes , 2004 .
[19] Matteo Pellegrini,et al. Prolinks: a database of protein functional linkages derived from coevolution , 2004, Genome Biology.
[20] M. Gerstein,et al. Integration of genomic datasets to predict protein complexes in yeast , 2004, Journal of Structural and Functional Genomics.
[21] Robert Turgeon,et al. Graft Transmission of a Floral Stimulant Derived from CONSTANS1 , 2004, Plant Physiology.
[22] Hsinchun Chen,et al. Extracting gene pathway relations using a hybrid grammar: the Arizona Relation Parser , 2004, Bioinform..
[23] Christian von Mering,et al. STRING: known and predicted protein–protein associations, integrated and transferred across organisms , 2004, Nucleic Acids Res..
[24] François Parcy,et al. The mRNA of the Arabidopsis Gene FT Moves from Leaf to Shoot Apex and Induces Flowering , 2005, Science.
[25] Minsoo Kim,et al. Analysis of flowering pathway integrators in Arabidopsis. , 2005, Plant & cell physiology.
[26] Hsinchun Chen,et al. Aggregating automatically extracted regulatory pathway relations , 2006, IEEE Transactions on Information Technology in Biomedicine.
[27] Hsinchun Chen,et al. Large-scale regulatory network analysis from microarray data: modified Bayesian network learning and association rule mining , 2007, Decis. Support Syst..