Jörg Langowski: his scientific legacy and the future it promises

[1]  C. Tardin.  The mechanics of DNA loops bridged by proteins unveiled by single-molecule experiments. , 2017, Biochimie.

[2]  D. E. Olins,et al.  Defining the epichromatin epitope , 2017, Nucleus.

[3]  J. Langowski,et al.  Effects of charge-modifying mutations in histone H2A α3-domain on nucleosome stability assessed by single-pair FRET and MD simulations , 2017, Scientific Reports.

[4]  M. Tomita,et al.  Dynamic organization of chromatin domains revealed by super-resolution live-cell imaging , 2017 .

[5]  J. Langowski,et al.  Transcriptomes reflect the phenotypes of undifferentiated, granulocyte and macrophage forms of HL-60/S4 cells , 2017, Nucleus.

[6]  D. E. Olins,et al.  Nucleosome repositioning during differentiation of a human myeloid leukemia cell line , 2017, Nucleus.

[7]  J. Langowski,et al.  Nucleosome Core Particle Disassembly and Assembly Kinetics Studied Using Single-Molecule Fluorescence. , 2015, Biophysical journal.

[8]  T. Ha,et al.  Nucleosomes undergo slow spontaneous gaping , 2015, Nucleic acids research.

[9]  J. Langowski,et al.  The effect of DNA supercoiling on nucleosome structure and stability , 2015, Journal of physics. Condensed matter : an Institute of Physics journal.

[10]  J. Langowski,et al.  Opposing roles of H3- and H4-acetylation in the regulation of nucleosome structure—a FRET study , 2015, Nucleic acids research.

[11]  Xiaolin Cheng,et al.  The role of histone tails in the nucleosome: a computational study. , 2014, Biophysical journal.

[12]  A. Mondragón,et al.  Single-molecule analysis uncovers the difference between the kinetics of DNA decatenation by bacterial topoisomerases I and III , 2014, Nucleic acids research.

[13]  L. Pollack,et al.  Revealing transient structures of nucleosomes as DNA unwinds , 2014, Nucleic acids research.

[14]  D. E. Olins,et al.  Retrotransposon Alu is enriched in the epichromatin of HL-60 cells , 2014, Nucleus.

[15]  D. E. Olins,et al.  ELCS in ice: cryo-electron microscopy of nuclear envelope-limited chromatin sheets , 2014, Chromosoma.

[16]  Thorsten Wohland,et al.  Dual-color fluorescence cross-correlation spectroscopy on a single plane illumination microscope (SPIM-FCCS). , 2014, Optics express.

[17]  Yan Li,et al.  A high-resolution map of three-dimensional chromatin interactome in human cells , 2013, Nature.

[18]  Karolin Luger,et al.  Torque modulates nucleosome stability and facilitates H2A/H2B dimer loss , 2013, Nature Communications.

[19]  J. Langowski,et al.  Histone‐ and DNA sequence‐dependent stability of nucleosomes studied by single‐pair FRET , 2013, Cytometry. Part A : the journal of the International Society for Analytical Cytology.

[20]  J. Langowski,et al.  Closing the Gap between Single Molecule and Bulk FRET Analysis of Nucleosomes , 2013, PloS one.

[21]  Isabel Jimenez-Useche,et al.  Clipping of flexible tails of histones H3 and H4 affects the structure and dynamics of the nucleosome. , 2013, Biophysical journal.

[22]  R. Bundschuh,et al.  Regulation of the nucleosome unwrapping rate controls DNA accessibility , 2012, Nucleic acids research.

[23]  H. Kurumizaka,et al.  Structural analysis of the hexasome, lacking one histone H2A/H2B dimer from the conventional nucleosome. , 2012, Biochemistry.

[24]  Joanna Trylska,et al.  Unwrapping of nucleosomal DNA ends: a multiscale molecular dynamics study. , 2012, Biophysical journal.

[25]  J. Langowski,et al.  DNA bending potentials for loop-mediated nucleosome repositioning , 2012 .

[26]  Jeremy C. Smith,et al.  Role of Histone Tails in Structural Stability of the Nucleosome , 2011, PLoS Comput. Biol..

[27]  Robert A. Forties,et al.  Histone fold modifications control nucleosome unwrapping and disassembly , 2011, Proceedings of the National Academy of Sciences.

[28]  D. E. Olins,et al.  An epichromatin epitope: Persistence in the cell cycle and conservation in evolution , 2011 .

[29]  J. Langowski,et al.  Nucleosome accessibility governed by the dimer/tetramer interface , 2010, Nucleic acids research.

[30]  Suren Felekyan,et al.  Detection of structural dynamics by FRET: a photon distribution and fluorescence lifetime analysis of systems with multiple states. , 2010, The journal of physical chemistry. B.

[31]  Jörg Langowski,et al.  Nucleosome disassembly intermediates characterized by single-molecule FRET , 2009, Proceedings of the National Academy of Sciences.

[32]  Carlos Bustamante,et al.  Nucleosomal Fluctuations Govern the Transcription Dynamics of RNA Polymerase II , 2009, Science.

[33]  Michael G. Poirier,et al.  DYNAMICS AND FUNCTION OF COMPACT NUCLEOSOME ARRAYS , 2009, Nature Structural &Molecular Biology.

[34]  D. E. Olins,et al.  Nuclear envelope-limited chromatin sheets (ELCS) and heterochromatin higher order structure , 2009, Chromosoma.

[35]  Joanna Trylska,et al.  Coarse‐grained force field for the nucleosome from self‐consistent multiscaling , 2008, J. Comput. Chem..

[36]  Jörg Langowski,et al.  Single-pair fluorescence resonance energy transfer of nucleosomes in free diffusion: optimizing stability and resolution of subpopulations. , 2007, Analytical biochemistry.

[37]  J. Langowski,et al.  Trinucleosome compaction studied by fluorescence energy transfer and scanning force microscopy. , 2006, Biochemistry.

[38]  J. Langowski.  Polymer chain models of DNA and chromatin , 2006, The European physical journal. E, Soft matter.

[39]  Suren Felekyan,et al.  Separating structural heterogeneities from stochastic variations in fluorescence resonance energy transfer distributions via photon distribution analysis. , 2006, The journal of physical chemistry. B.

[40]  Nathalie Brun,et al.  Chromatin compaction at the mononucleosome level. , 2006, Biochemistry.

[41]  J. Bednar,et al.  Histone Octamer Instability under Single Molecule Experiment Conditions* , 2005, Journal of Biological Chemistry.

[42]  V. Levchenko,et al.  Histone release during transcription: displacement of the two H2A-H2B dimers in the nucleosome is dependent on different levels of transcription-induced positive stress. , 2005, Biochemistry.

[43]  Jordanka Zlatanova,et al.  Fast, long-range, reversible conformational fluctuations in nucleosomes revealed by single-pair fluorescence resonance energy transfer. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[44]  C. Allis,et al.  Histone and chromatin cross-talk. , 2003, Current opinion in cell biology.

[45]  M. Kashlev,et al.  Nucleosome remodeling induced by RNA polymerase II: loss of the H2A/H2B dimer during transcription. , 2002, Molecular cell.

[46]  J Langowski,et al.  Trajectory of nucleosomal linker DNA studied by fluorescence resonance energy transfer. , 2001, Biochemistry.

[47]  K. Klenin,et al.  Computation of writhe in modeling of supercoiled DNA. , 2000, Biopolymers.

[48]  C. Ponting,et al.  Regulation of chromatin structure by site-specific histone H3 methyltransferases , 2000, Nature.

[49]  J. Widom,et al.  Effects of core histone tail domains on the equilibrium constants for dynamic DNA site accessibility in nucleosomes. , 2000, Journal of molecular biology.

[50]  K. Klenin,et al.  Salt-dependent DNA superhelix diameter studied by small angle neutron scattering measurements and Monte Carlo simulations. , 1998, Biophysical journal.

[51]  T Schlick,et al.  Internal motion of supercoiled DNA: brownian dynamics simulations of site juxtaposition. , 1998, Journal of molecular biology.

[52]  J Langowski,et al.  A Brownian dynamics program for the simulation of linear and circular DNA and other wormlike chain polyelectrolytes. , 1998, Biophysical journal.

[53]  K Rippe,et al.  Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation. , 1998, Biophysical journal.

[54]  H. Merlitz,et al.  Salt effects on the structure and internal dynamics of superhelical DNAs studied by light scattering and Brownian dynamics. , 1997, Biophysical Journal.

[55]  J. Langowski,et al.  Brownian dynamics simulations of supercoiled DNA with bent sequences. , 1996, Biophysical journal.

[56]  G. Chirico.  Torsional-bending infinitesimal dynamics of a DNA chain. , 1996, Biopolymers.

[57]  J. Michael Schurr,et al.  Monte Carlo simulations of supercoiling free energies for unknotted and trefoil knotted DNAs. , 1995, Biophysical journal.

[58]  W. Brooks,et al.  Dynamics of the interactions of histones H2A,H2B and H3,H4 with torsionally stressed DNA. , 1994, Biochemistry.

[59]  K. Klenin,et al.  Solution structure and dynamics of DNA topoisomers: Dynamic light scattering studies and Monte Carlo simulations , 1994 .

[60]  Giuseppe Chirico,et al.  Kinetics of DNA supercoiling studied by Brownian dynamics simulation , 1994 .

[61]  R. Ghirlando,et al.  Effect of positive supercoiling on DNA compaction by nucleosome cores. , 1993, Journal of molecular biology.

[62]  G. Felsenfeld,et al.  A nucleosome core is transferred out of the path of a transcribing polymerase , 1992, Cell.

[63]  Tamar Schlick,et al.  Trefoil Knotting Revealed by Molecular Dynamics Simulations of Supercoiled DNA , 1992, Science.

[64]  T Schlick,et al.  Supercoiled DNA energetics and dynamics by computer simulation. , 1992, Journal of molecular biology.

[65]  K. V. van Holde,et al.  What happens to nucleosomes during transcription? , 1992, The Journal of biological chemistry.

[66]  Robert H. Austin,et al.  Bending and twisting dynamics of short linear DNAs. Analysis of the triplet anisotropy decay of a 209 base pair fragment by Brownian simulation , 1989 .

[67]  K. V. van Holde,et al.  Salt-induced release of DNA from nucleosome core particles. , 1989, Biochemistry.

[68]  J. Langowski.  Salt effects on internal motions of superhelical and linear pUC8 DNA. Dynamic light scattering studies. , 1987, Biophysical chemistry.

[69]  S. Edwards,et al.  The Theory of Polymer Dynamics , 1986 .

[70]  J. Langowski,et al.  Dynamics of superhelical DNA studied by photon correlation spectroscopy. , 1986, Biophysical chemistry.

[71]  J. Michael Schurr,et al.  Change of conformation and internal dynamics of supercoiled DNA upon binding of Escherichia coli single-strand binding protein. , 1985, Biochemistry.

[72]  J. Michael Schurr,et al.  Deformational dynamics and nmr relaxation of supercoiled DNAs , 1985, Biopolymers.

[73]  R. L. Baldwin,et al.  DNA flexibility studied by covalent closure of short fragments into circles. , 1981, Proceedings of the National Academy of Sciences of the United States of America.

[74]  Donald E. Olins,et al.  Spheroid Chromatin Units (ν Bodies) , 1974, Science.

[75]  D. E. Olins,et al.  An epichromatin epitope: persistence in the cell cycle and conservation in evolution. , 2011, Nucleus.

[76]  D. Lohr,et al.  Sequence-dependent variations associated with H2A/H2B depletion of nucleosomes. , 2008, Biophysical journal.

[77]  D. Speiser,et al.  Fast , long-range , reversible conformational fluctuations in nucleosomes revealed by single-pair fluorescence resonance energy transfer , 2008 .

[78]  J. Langowski,et al.  Dynamic light scattering for study of solution conformation and dynamics of superhelical DNA. , 1992, Methods in enzymology.

[79]  D. E. Olins,et al.  Spheroid chromatin units (v bodies). , 1974, Science.