Integrative omics approaches revealed a crosstalk among phytohormones during tuberous root development in cassava

[1]  J. Chory,et al.  Stressed Out About Hormones: How Plants Orchestrate Immunity. , 2019, Cell host & microbe.

[2]  W. Gruissem,et al.  Symplasmic phloem unloading and radial post-phloem transport via vascular rays in tuberous roots of Manihot esculenta , 2019, Journal of experimental botany.

[3]  G. Romanov,et al.  Auxins in potato: molecular aspects and emerging roles in tuber formation and stress resistance , 2019, Plant Cell Reports.

[4]  C. De-la-Peña,et al.  Signaling Overview of Plant Somatic Embryogenesis , 2019, Front. Plant Sci..

[5]  H. Lam,et al.  Plant Hormone Signaling Crosstalks between Biotic and Abiotic Stress Responses , 2018, International journal of molecular sciences.

[6]  Dongxia Wang,et al.  Comparative Proteomic Analysis of Potato (Solanum tuberosum L.) Tuberization In Vitro Regulated by IAA , 2018, American Journal of Potato Research.

[7]  M. Seki,et al.  Formation of friable embryogenic callus in cassava is enhanced under conditions of reduced nitrate, potassium and phosphate , 2017, PloS one.

[8]  Jiayang Li,et al.  Hormone Metabolism and Signaling in Plants , 2017 .

[9]  Zhou Du,et al.  agriGO v2.0: a GO analysis toolkit for the agricultural community, 2017 update , 2017, Nucleic Acids Res..

[10]  A. Banerjee,et al.  The Multiple Signals That Control Tuber Formation1[OPEN] , 2017, Plant Physiology.

[11]  L. Sergeeva,et al.  Auxin synthesis gene tms1 driven by tuber-specific promoter alters hormonal status of transgenic potato plants and their responses to exogenous phytohormones , 2017, Plant Cell Reports.

[12]  A. Banerjee,et al.  Multiple Mobile mRNA Signals Regulate Tuber Development in Potato , 2017, Plants.

[13]  T. Takáč,et al.  Cytokinin-Specific Glycosyltransferases Possess Different Roles in Cytokinin Homeostasis Maintenance , 2016, Front. Plant Sci..

[14]  Cristiana T Argueso,et al.  No hormone to rule them all: Interactions of plant hormones during the responses of plants to pathogens. , 2016, Seminars in cell & developmental biology.

[15]  T. Sakurai,et al.  Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray , 2016, Journal of Plant Research.

[16]  T. Sakurai,et al.  Cassava (Manihot esculenta) transcriptome analysis in response to infection by the fungus Colletotrichum gloeosporioides using an oligonucleotide-DNA microarray , 2016, Journal of Plant Research.

[17]  K. Palme,et al.  Hydrolases of the ILR1-like family of Arabidopsis thaliana modulate auxin response by regulating auxin homeostasis in the endoplasmic reticulum , 2016, Scientific Reports.

[18]  Qin Chen,et al.  Genome-wide survey of Aux/IAA gene family members in potato (Solanum tuberosum): Identification, expression analysis, and evaluation of their roles in tuber development. , 2016, Biochemical and biophysical research communications.

[19]  Chun-Gen Hu,et al.  A Review of Auxin Response Factors (ARFs) in Plants , 2016, Front. Plant Sci..

[20]  H. Kasahara,et al.  Current aspects of auxin biosynthesis in plants , 2016, Bioscience, biotechnology, and biochemistry.

[21]  N. Firon,et al.  Survey of Genes Involved in Biosynthesis, Transport, and Signaling of Phytohormones with Focus on Solanum lycopersicum , 2016, Bioinformatics and biology insights.

[22]  Zhengyi Wei,et al.  Stable Expression of Basic Fibroblast Growth Factor in Chloroplasts of Tobacco , 2015, International journal of molecular sciences.

[23]  L. Sergeeva,et al.  Expression of auxin synthesis gene tms1 under control of tuber-specific promoter enhances potato tuberization in vitro. , 2015, Journal of integrative plant biology.

[24]  T. Sakurai,et al.  Genome-wide analysis reveals phytohormone action during cassava storage root initiation , 2015, Plant Molecular Biology.

[25]  Andrew R. Jakubowski,et al.  Assessing metabolomic and chemical diversity of a soybean lineage representing 35 years of breeding , 2015, Metabolomics.

[26]  N. Taylor,et al.  Anatomical Assessment of Root Formation and Tuberization in Cassava (Manihot esculenta Crantz) , 2015, Tropical Plant Biology.

[27]  Matthew E. Ritchie,et al.  limma powers differential expression analyses for RNA-sequencing and microarray studies , 2015, Nucleic acids research.

[28]  Hideyuki Suzuki,et al.  Integrated Analysis of the Effects of Cold and Dehydration on Rice Metabolites, Phytohormones, and Gene Transcripts1[W][OPEN] , 2014, Plant Physiology.

[29]  T. Kiba,et al.  Side-chain modification of cytokinins controls shoot growth in Arabidopsis. , 2013, Developmental cell.

[30]  C. Bachem,et al.  The PIN family of proteins in potato and their putative role in tuberization , 2013, Front. Plant Sci..

[31]  J. Friml,et al.  Arabidopsis TWISTED DWARF1 Functionally Interacts with Auxin Exporter ABCB1 on the Root Plasma Membrane[C][W] , 2013, Plant Cell.

[32]  C. Bachem,et al.  A crosstalk of auxin and GA during tuber development , 2012, Plant signaling & behavior.

[33]  N. Aksenova,et al.  Hormonal regulation of tuber formation in potato plants , 2012, Russian Journal of Plant Physiology.

[34]  T. Sakurai,et al.  Transcriptome Analysis Using a High-Density Oligomicroarray under Drought Stress in Various Genotypes of Cassava: An Important Tropical Crop , 2012, DNA research : an international journal for rapid publication of reports on genes and genomes.

[35]  S. Prat,et al.  Gibberellin A1 Metabolism Contributes to the Control of Photoperiod-Mediated Tuberization in Potato , 2011, PloS one.

[36]  Yasunori Nakamura,et al.  Functional Diversity of Isoamylase Oligomers: The ISA1 Homo-Oligomer Is Essential for Amylopectin Biosynthesis in Rice Endosperm1[W][OA] , 2011, Plant Physiology.

[37]  Jun Yang,et al.  Expression profiling of cassava storage roots reveals an active process of glycolysis/gluconeogenesis. , 2011, Journal of integrative plant biology.

[38]  J. Ludwig-Müller Auxin conjugates: their role for plant development and in the evolution of land plants. , 2011, Journal of experimental botany.

[39]  L. Luo,et al.  Effects of Plant Growth Regulators and Saccharide on In Vitro Plant and Tuberous Root Regeneration of Cassava (Manihot esculenta Crantz) , 2011, Journal of Plant Growth Regulation.

[40]  Kazuki Saito,et al.  Covering Chemical Diversity of Genetically-Modified Tomatoes Using Metabolomics for Objective Substantial Equivalence Assessment , 2011, PloS one.

[41]  Hongwei Guo,et al.  AHD2.0: an update version of Arabidopsis Hormone Database for plant systematic studies , 2010, Nucleic Acids Res..

[42]  M. Tsiantis,et al.  KNOX genes: versatile regulators of plant development and diversity , 2010, Development.

[43]  Kazuki Saito,et al.  Compensation for systematic cross-contribution improves normalization of mass spectrometry based metabolomics data. , 2009, Analytical chemistry.

[44]  M. Matsuoka,et al.  Highly sensitive and high-throughput analysis of plant hormones using MS-probe modification and liquid chromatography-tandem mass spectrometry: an application for hormone profiling in Oryza sativa. , 2009, Plant & cell physiology.

[45]  S. Netrphan,et al.  Influence of Cassava Storage Root Development and Environmental Conditions on Starch Granule Size Distribution , 2008 .

[46]  Keithanne Mockaitis,et al.  Auxin receptors and plant development: a new signaling paradigm. , 2008, Annual review of cell and developmental biology.

[47]  K. Yeh,et al.  IbMADS1 (Ipomoea batatas MADS-box 1 gene) is Involved in Tuberous Root Initiation in Sweet Potato (Ipomoea batatas) , 2008, Annals of botany.

[48]  C. Bachem,et al.  StGA2ox1 is induced prior to stolon swelling and controls GA levels during potato tuber development. , 2007, The Plant journal : for cell and molecular biology.

[49]  Kazuki Saito,et al.  Application of a metabolomic method combining one-dimensional and two-dimensional gas chromatography-time-of-flight/mass spectrometry to metabolic phenotyping of natural variants in rice. , 2007, Journal of chromatography. B, Analytical technologies in the biomedical and life sciences.

[50]  M. Kojima,et al.  Overexpression of a type-A response regulator alters rice morphology and cytokinin metabolism. , 2007, Plant & cell physiology.

[51]  M. Faloci,et al.  In vitro cultured primary roots derived from stem segments of cassava (Manihot esculenta) can behave like storage organs. , 2007, Annals of botany.

[52]  Nori Kurata,et al.  Identification and characterization of cytokinin-signalling gene families in rice. , 2006, Gene.

[53]  S. Prat,et al.  Seasonal control of tuberization in potato: conserved elements with the flowering response. , 2006, Annual review of plant biology.

[54]  Jitendra P Khurana,et al.  Bmc Plant Biology Molecular Characterization and Differential Expression of Cytokinin-responsive Type-a Response Regulators in Rice (oryza Sativa) , 2005 .

[55]  Yasunori Nakamura,et al.  Expression Profiling of Genes Involved in Starch Synthesis in Sink and Source Organs of Rice , 2005 .

[56]  D. Sarkar,et al.  In vitro production of microtubers for conservation of potato germplasm: Effect of genotype, abscisic acid, and sucrose , 2004, In Vitro Cellular & Developmental Biology - Plant.

[57]  David Thorneycroft,et al.  Diurnal Changes in the Transcriptome Encoding Enzymes of Starch Metabolism Provide Evidence for Both Transcriptional and Posttranscriptional Regulation of Starch Metabolism in Arabidopsis Leaves1 , 2004, Plant Physiology.

[58]  R. Viola,et al.  Changes in gene expression during meristem activation processes in Solanum tuberosum with a focus on the regulation of an auxin response factor gene. , 2004, Journal of experimental botany.

[59]  T. Altmann,et al.  Brassinosteroids Promote Root Growth in Arabidopsis , 2003, Plant Physiology.

[60]  O. Miersch,et al.  Changes in jasmonate and gibberellin levels during development of potato plants (Solanum tuberosum) , 2002, Plant Growth Regulation.

[61]  A. Hanson,et al.  Enhanced synthesis of choline and glycine betaine in transgenic tobacco plants that overexpress phosphoethanolamine N-methyltransferase , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[62]  D. Galbraith,et al.  CYP83B1, a Cytochrome P450 at the Metabolic Branch Point in Auxin and Indole Glucosinolate Biosynthesis in Arabidopsis , 2001, Plant Cell.

[63]  T. Roitsch,et al.  Regulation of source/sink relations by cytokinins , 2000, Plant Growth Regulation.

[64]  L. Willmitzer,et al.  Effect of indole-3-acetic acid and kinetin on tuberisation parameters of different cultivars and transgenic lines of potato in vitro , 2000, Plant Growth Regulation.

[65]  G. Hagen,et al.  Activation and repression of transcription by auxin-response factors. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[66]  D. Vreugdenhil,et al.  The role of gibberellin, abscisic acid, and sucrose in the regulation of potato tuber formation in vitro , 1998, Plant physiology.

[67]  P. Nygaard,et al.  A second form of adenine phosphoribosyltransferase in Arabidopsis thaliana with relative specificity towards cytokinins. , 1996, The Plant journal : for cell and molecular biology.

[68]  A. Pelacho,et al.  Jasmonic Acid induces tuberization of potato stolons cultured in vitro. , 1991, Plant physiology.

[69]  C. C. Black,et al.  Identification of actively filling sucrose sinks. , 1989, Plant physiology.

[70]  Y. Koda,et al.  Characteristic Changes in the Levels of Endogenous Plant Hormones in Relation to the Onset of Potato Tuberization , 1983 .

[71]  P. Wareing,et al.  STUDIES ON TUBERIZATION OF SOLANUM ANDIGENA , 1974 .

[72]  N. Aksenova,et al.  Hormonal Regulation of Tuber Formation in Potato , 2013 .

[73]  T. Kiba,et al.  Arabidopsis lonely guy (LOG) multiple mutants reveal a central role of the LOG-dependent pathway in cytokinin activation. , 2012, The Plant journal : for cell and molecular biology.

[74]  Tadao Asami,et al.  Plant brassinosteroid hormones. , 2005, Vitamins and hormones.

[75]  Ovesná Jaroslava,et al.  Growth pattern, tuber formation and hormonal balance in in vitro potato plants carrying ipt gene , 2004, Plant Growth Regulation.

[76]  L. Willmitzer,et al.  Transformed potato plants as a model for studying the hormonal and carbohydrate regulation of tuberization. , 2000 .

[77]  Y. Benjamini,et al.  Controlling the false discovery rate: a practical and powerful approach to multiple testing , 1995 .