Francisella tularensis IglG Belongs to a Novel Family of PAAR-Like T6SS Proteins and Harbors a Unique N-terminal Extension Required for Virulence

The virulence of Francisella tularensis, the etiological agent of tularemia, relies on an atypical type VI secretion system (T6SS) encoded by a genomic island termed the Francisella Pathogenicity Island (FPI). While the importance of the FPI in F. tularensis virulence is clearly established, the precise role of most of the FPI-encoded proteins remains to be deciphered. In this study, using highly virulent F. tularensis strains and the closely related species F. novicida, IglG was characterized as a protein featuring a unique α-helical N-terminal extension and a domain of unknown function (DUF4280), present in more than 250 bacterial species. Three dimensional modeling of IglG and of the DUF4280 consensus protein sequence indicates that these proteins adopt a PAAR-like fold, suggesting they could cap the T6SS in a similar way as the recently described PAAR proteins. The newly identified PAAR-like motif is characterized by four conserved cysteine residues, also present in IglG, which may bind a metal atom. We demonstrate that IglG binds metal ions and that each individual cysteine is required for T6SS-dependent secretion of IglG and of the Hcp homologue, IglC and for the F. novicida intracellular life cycle. In contrast, the Francisella-specific N-terminal α-helical extension is not required for IglG secretion, but is critical for F. novicida virulence and for the interaction of IglG with another FPI-encoded protein, IglF. Altogether, our data suggest that IglG is a PAAR-like protein acting as a bi-modal protein that may connect the tip of the Francisella T6SS with a putative T6SS effector, IglF.

[1]  S. Coulthurst,et al.  Aim, Load, Fire: The Type VI Secretion System, a Bacterial Nanoweapon. , 2016, Trends in microbiology.

[2]  A. Sjöstedt,et al.  Importance of PdpC, IglC, IglI, and IglG for Modulation of a Host Cell Death Pathway Induced by Francisella tularensis , 2013, Infection and Immunity.

[3]  M. Forsman,et al.  Genome characterisation of the genus Francisella reveals insight into similar evolutionary paths in pathogens of mammals and fish , 2012, BMC Genomics.

[4]  Michael J E Sternberg,et al.  The Phyre2 web portal for protein modeling, prediction and analysis , 2015, Nature Protocols.

[5]  K. Waldron,et al.  How do bacterial cells ensure that metalloproteins get the correct metal? , 2009, Nature Reviews Microbiology.

[6]  A. Sjöstedt,et al.  Unique Substrates Secreted by the Type VI Secretion System of Francisella tularensis during Intramacrophage Infection , 2012, PloS one.

[7]  W. Cook,et al.  Mutations in the zinc-finger region of the yeast regulatory protein ADR1 affect both DNA binding and transcriptional activation. , 1994, The Journal of biological chemistry.

[8]  V. Dixit,et al.  Absent in melanoma 2 is required for innate immune recognition of Francisella tularensis , 2010, Proceedings of the National Academy of Sciences.

[9]  E. Yamashita,et al.  The host-binding domain of the P2 phage tail spike reveals a trimeric iron-binding structure. , 2011, Acta crystallographica. Section F, Structural biology and crystallization communications.

[10]  Junmei Wang,et al.  Development and testing of a general amber force field , 2004, J. Comput. Chem..

[11]  Narmada Thanki,et al.  CDD: NCBI's conserved domain database , 2014, Nucleic Acids Res..

[12]  Christian Cambillau,et al.  Architecture and assembly of the Type VI secretion system. , 2014, Biochimica et biophysica acta.

[13]  K. Klose,et al.  The Francisella tularensis pathogenicity island protein IglC and its regulator MglA are essential for modulating phagosome biogenesis and subsequent bacterial escape into the cytoplasm , 2005, Cellular microbiology.

[14]  M. Horwitz,et al.  Francisella tularensis Phagosomal Escape Does Not Require Acidification of the Phagosome , 2009, Infection and Immunity.

[15]  Stephen Lory,et al.  A Virulence Locus of Pseudomonas aeruginosa Encodes a Protein Secretion Apparatus , 2006, Science.

[16]  Christopher M. Bailey,et al.  Type VI secretion: a beginner's guide. , 2008, Current opinion in microbiology.

[17]  D. Goodlett,et al.  Genetically distinct pathways guide effector export through the type VI secretion system , 2014, Molecular microbiology.

[18]  Berk Hess,et al.  GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers , 2015 .

[19]  P. Ralph,et al.  Lysozyme synthesis by established human and murine histiocytic lymphoma cell lines , 1976, The Journal of experimental medicine.

[20]  K. Hueffer,et al.  The biochemical properties of the Francisella pathogenicity island (FPI)-encoded proteins IglA, IglB, IglC, PdpB and DotU suggest roles in type VI secretion. , 2011, Microbiology.

[21]  J. Bina,et al.  The Bla2 β-lactamase from the live-vaccine strain of Francisella tularensis encodes a functional protein that is only active against penicillin-class β-lactam antibiotics , 2006, Archives of Microbiology.

[22]  Lee Whitmore,et al.  DICHROWEB, an online server for protein secondary structure analyses from circular dichroism spectroscopic data , 2004, Nucleic Acids Res..

[23]  J. Mekalanos,et al.  PAAR-repeat proteins sharpen and diversify the Type VI secretion system spike , 2013, Nature.

[24]  A. Sjöstedt,et al.  A Conserved α-Helix Essential for a Type VI Secretion-Like System of Francisella tularensis , 2009, Journal of bacteriology.

[25]  Zhengfan Jiang,et al.  CD14 is required for MyD88-independent LPS signaling , 2005, Nature Immunology.

[26]  J. Bliska Faculty Opinions recommendation of Francisella tularensis inhibits Toll-like receptor-mediated activation of intracellular signalling and secretion of TNF-alpha and IL-1 from murine macrophages. , 2003 .

[27]  P. Leiman,et al.  Phage pierces the host cell membrane with the iron-loaded spike. , 2012, Structure.

[28]  R. J. P. Williams,et al.  637. The stability of transition-metal complexes , 1953 .

[29]  M J Harvey,et al.  ACEMD: Accelerating Biomolecular Dynamics in the Microsecond Time Scale. , 2009, Journal of chemical theory and computation.

[30]  I. Golovliov,et al.  Identification of Genes Contributing to the Virulence of Francisella tularensis SCHU S4 in a Mouse Intradermal Infection Model , 2009, PloS one.

[31]  L. Gallagher,et al.  Genetic Dissection of the Francisella novicida Restriction Barrier , 2008, Journal of bacteriology.

[32]  A. Hochschild,et al.  A bacterial two-hybrid system based on transcription activation. , 2004, Methods in molecular biology.

[33]  N. Sreerama,et al.  A self-consistent method for the analysis of protein secondary structure from circular dichroism. , 1993, Analytical biochemistry.

[34]  P. Mangeot,et al.  AIM2/ASC triggers caspase-8-dependent apoptosis in Francisella-infected caspase-1-deficient macrophages , 2012, Cell Death and Differentiation.

[35]  Young Ah Goo,et al.  A type VI secretion-related pathway in Bacteroidetes mediates interbacterial antagonism. , 2014, Cell host & microbe.

[36]  J. Mackay,et al.  CCHX Zinc Finger Derivatives Retain the Ability to Bind Zn(II) and Mediate Protein-DNA Interactions* , 2003, Journal of Biological Chemistry.

[37]  G. Leonard,et al.  The structure of the Helicobacter pylori ferric uptake regulator Fur reveals three functional metal binding sites , 2011, Molecular microbiology.

[38]  Na Zhang,et al.  A Francisella tularensis Pathogenicity Island Required for Intramacrophage Growth , 2004, Journal of bacteriology.

[39]  S. Aoki,et al.  Identification of Functional Toxin/Immunity Genes Linked to Contact-Dependent Growth Inhibition (CDI) and Rearrangement Hotspot (Rhs) Systems , 2011, PLoS genetics.

[40]  Jeffrey R. Barker,et al.  The Francisella tularensis pathogenicity island encodes a secretion system that is required for phagosome escape and virulence , 2009, Molecular microbiology.

[41]  D. Frank,et al.  Construction and Characterization of a Highly Efficient Francisella Shuttle Plasmid , 2004, Applied and Environmental Microbiology.

[42]  B. Sarkar,et al.  Alteration of zif268 zinc-finger motifs gives rise to non-native zinc-co-ordination sites but preserves wild-type DNA recognition. , 1998, The Biochemical journal.

[43]  M. Telepnev,et al.  Francisella tularensis inhibits Toll‐like receptor‐mediated activation of intracellular signalling and secretion of TNF‐α and IL‐1 from murine macrophages , 2003, Cellular microbiology.

[44]  T. Gonen,et al.  Haemolysin coregulated protein is an exported receptor and chaperone of type VI secretion substrates. , 2013, Molecular cell.

[45]  Z. Zhou,et al.  Atomic Structure of T6SS Reveals Interlaced Array Essential to Function , 2015, Cell.

[46]  D. Monack,et al.  In vivo negative selection screen identifies genes required for Francisella virulence , 2007, Proceedings of the National Academy of Sciences.

[47]  A. Sjöstedt,et al.  Microinjection of Francisella tularensis and Listeria monocytogenes Reveals the Importance of Bacterial and Host Factors for Successful Replication , 2015, Infection and Immunity.

[48]  A. Sjöstedt,et al.  The Role of the Francisella Tularensis Pathogenicity Island in Type VI Secretion, Intracellular Survival, and Modulation of Host Cell Signaling , 2010, Front. Microbio..

[49]  Yang Zhang,et al.  I-TASSER server for protein 3D structure prediction , 2008, BMC Bioinformatics.

[50]  T. Brettin,et al.  Molecular Evolutionary Consequences of Niche Restriction in Francisella tularensis, a Facultative Intracellular Pathogen , 2009, PLoS pathogens.

[51]  A. Filloux,et al.  Type VI secretion and anti-host effectors. , 2016, Current opinion in microbiology.

[52]  I. Golovliov,et al.  MglA and Igl Proteins Contribute to the Modulation of Francisella tularensis Live Vaccine Strain-Containing Phagosomes in Murine Macrophages , 2008, Infection and Immunity.

[53]  Andrew T. Revel,et al.  Type VI secretion system translocates a phage tail spike-like protein into target cells where it cross-links actin , 2007, Proceedings of the National Academy of Sciences.

[54]  Jeffrey R. Barker,et al.  Allelic exchange in Francisella tularensis using PCR products. , 2003, FEMS microbiology letters.

[55]  I. Golovliov,et al.  A method for allelic replacement in Francisella tularensis. , 2003, FEMS microbiology letters.

[56]  J. Enninga,et al.  Monitoring Shigella flexneri vacuolar escape by flow cytometry , 2011, Virulence.

[57]  Paul A. Wiggins,et al.  Diverse type VI secretion phospholipases are functionally plastic antibacterial effectors , 2013, Nature.

[58]  J. Joung,et al.  Repression of phase-variable cup gene expression by H-NS-like proteins in Pseudomonas aeruginosa. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[59]  Robert D. Finn,et al.  HMMER web server: 2015 update , 2015, Nucleic Acids Res..

[60]  F. Nano,et al.  The identification of five genetic loci of Francisella novicida associated with intracellular growth. , 2002, FEMS microbiology letters.

[61]  A. Filloux,et al.  The VgrG Proteins Are “à la Carte” Delivery Systems for Bacterial Type VI Effectors* , 2014, The Journal of Biological Chemistry.

[62]  W. Nelson,et al.  Identification of a conserved bacterial protein secretion system in Vibrio cholerae using the Dictyostelium host model system , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[63]  D. Monack,et al.  Type I interferon signaling is required for activation of the inflammasome during Francisella infection , 2007, The Journal of experimental medicine.

[64]  S. B. Peterson,et al.  Type VI secretion system effectors: poisons with a purpose , 2014, Nature Reviews Microbiology.

[65]  Competitive binding of UBPY and ubiquitin to the STAM2 SH3 domain revealed by NMR , 2012, FEBS letters.

[66]  A. Sjöstedt,et al.  IglG and IglI of the Francisella Pathogenicity Island Are Important Virulence Determinants of Francisella tularensis LVS , 2011, Infection and Immunity.

[67]  C. Schmerk,et al.  The Francisella Pathogenicity Island , 2007, Annals of the New York Academy of Sciences.

[68]  Mark S. Thomas,et al.  In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages. , 2007, Microbiology.

[69]  Frédéric Boyer,et al.  Dissecting the bacterial type VI secretion system by a genome wide in silico analysis: what can be learned from available microbial genomic resources? , 2009, BMC Genomics.

[70]  Tara L. Kieffer,et al.  Francisella novicida LPS has greater immunobiological activity in mice than F. tularensis LPS, and contributes to F. novicida murine pathogenesis. , 2003, Microbes and infection.

[71]  H. Wilson,et al.  Tularemia vaccine study. II. Respiratory challenge. , 1961, Archives of internal medicine.

[72]  M. Faure,et al.  Caspase-1 activity affects AIM2 speck formation/stability through a negative feedback loop , 2013, Front. Cell. Infect. Microbiol..

[73]  G. Plano,et al.  The SycN/YscB chaperone-binding domain of YopN is required for the calcium-dependent regulation of Yop secretion by Yersinia pestis , 2013, Front. Cell. Inf. Microbio..

[74]  D. Lackman,et al.  COMPARATIVE STUDIES OF FRANCISELLA TULARENSIS AND FRANCISELLA NOVICIDA , 1964, Journal of bacteriology.

[75]  Vivek Anantharaman,et al.  Evolutionary history, structural features and biochemical diversity of the NlpC/P60 superfamily of enzymes , 2003, Genome Biology.

[76]  F. Narberhaus,et al.  IcmF Family Protein TssM Exhibits ATPase Activity and Energizes Type VI Secretion* , 2012, The Journal of Biological Chemistry.

[77]  M. Telepnev,et al.  Factors affecting the escape of Francisella tularensis from the phagolysosome. , 2004, Journal of medical microbiology.

[78]  J. Bina,et al.  The Bla2 beta-lactamase from the live-vaccine strain of Francisella tularensis encodes a functional protein that is only active against penicillin-class beta-lactam antibiotics. , 2006, Archives of microbiology.

[79]  Eric P. Skaar,et al.  Metal Chelation and Inhibition of Bacterial Growth in Tissue Abscesses , 2008, Science.