Environmental genomics of "Haloquadratum walsbyi" in a saltern crystallizer indicates a large pool of accessory genes in an otherwise coherent species
暂无分享,去创建一个
Henk Bolhuis | Jose Carlos Alba-Casado | W. Doolittle | F. Rodríguez-Valera | H. Bolhuis | R. Papke | W Ford Doolittle | Francisco Rodriguez-Valera | Boris A Legault | Arantxa Lopez-Lopez | R Thane Papke | B. Legault | A. López-López | Ford Doolittle | Thane Papke
[1] W. Doolittle,et al. Frequent Recombination in a Saltern Population of Halorubrum , 2004, Science.
[2] K. Konstantinidis,et al. Genomic insights that advance the species definition for prokaryotes. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[3] S. Salzberg,et al. Improved microbial gene identification with GLIMMER. , 1999, Nucleic acids research.
[4] Chanathip Pharino,et al. Genotypic Diversity Within a Natural Coastal Bacterioplankton Population , 2005, Science.
[5] J. Imhoff,et al. Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern , 1985, Microbial Ecology.
[6] W. Doolittle,et al. Diversity of bacteriorhodopsins in different hypersaline waters from a single Spanish saltern. , 2003, Environmental microbiology.
[7] S Karlin,et al. Compositional biases of bacterial genomes and evolutionary implications , 1997, Journal of bacteriology.
[8] H. Tettelin,et al. The microbial pan-genome. , 2005, Current opinion in genetics & development.
[9] R. Amann,et al. Fluorescence in situ hybridization analysis of the prokaryotic community inhabiting crystallizer ponds. , 1999, Environmental microbiology.
[10] R. Amann,et al. Extremely Halophilic Bacteria in Crystallizer Ponds from Solar Salterns , 2000, Applied and Environmental Microbiology.
[11] C. Schleper,et al. Characterization of large-insert DNA libraries from soil for environmental genomic studies of Archaea. , 2004, Environmental microbiology.
[12] Jaideep P. Sundaram,et al. Genome analysis of multiple pathogenic isolates of Streptococcus agalactiae: implications for the microbial "pan-genome". , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[13] R. Prins,et al. Oligotrophy and pelagic marine bacteria: Facts and fiction , 1997 .
[14] S. Acinas,et al. Fine-scale phylogenetic architecture of a complex bacterial community , 2004, Nature.
[15] J. Antón,et al. Diversity of Free-Living and Attached Bacteria in Offshore Western Mediterranean Waters as Depicted by Analysis of Genes Encoding 16S rRNA , 1999, Applied and Environmental Microbiology.
[16] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[17] B. Palenik,et al. Niche adaptation in ocean cyanobacteria , 1998, Nature.
[18] M. Holden,et al. Staphylococcus aureus: superbug, super genome? , 2004, Trends in microbiology.
[19] Henk Bolhuis,et al. Isolation and cultivation of Walsby's square archaeon. , 2004, Environmental microbiology.
[20] H. Ochman,et al. Distribution of chromosome length variation in natural isolates of Escherichia coli. , 1998, Molecular biology and evolution.
[21] A. Walsby,et al. A square bacterium , 1980, Nature.
[22] O. White,et al. Environmental Genome Shotgun Sequencing of the Sargasso Sea , 2004, Science.
[23] J. Banfield,et al. Community structure and metabolism through reconstruction of microbial genomes from the environment , 2004, Nature.
[24] M. Dyall-Smith,et al. Combined Use of Cultivation-Dependent and Cultivation-Independent Methods Indicates that Members of Most Haloarchaeal Groups in an Australian Crystallizer Pond Are Cultivable , 2004, Applied and Environmental Microbiology.
[25] J. Antón,et al. Archaeal Biodiversity in Crystallizer Ponds from a Solar Saltern: Culture versus PCR , 2000, Microbial Ecology.
[26] W. Doolittle,et al. The genome of Salinibacter ruber: convergence and gene exchange among hyperhalophilic bacteria and archaea. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[27] F. Rodríguez-Valera,et al. Sequencing of Bacterial and Archaeal 16S rRNA Genes Directly Amplified from a Hypersaline Environment , 1995 .
[28] F. Rodríguez-Valera,et al. Characterization of Microbial Diversity in Hypersaline Environments by Melting Profiles and Reassociation Kinetics in Combination with Terminal Restriction Fragment Length Polymorphism (T-RFLP) , 2003, Microbial Ecology.
[29] Frede Thingstad,et al. Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. , 2002, Environmental microbiology.
[30] M. Noordewier,et al. Genome Streamlining in a Cosmopolitan Oceanic Bacterium , 2005, Science.
[31] M. Dyall-Smith,et al. Cultivation of Walsby's square haloarchaeon. , 2004, FEMS microbiology letters.
[32] Microbiology and biogeochemistry of hypersaline environments , 1999 .
[33] L. Øvreås,et al. Prokaryotic Diversity--Magnitude, Dynamics, and Controlling Factors , 2002, Science.
[34] F. Rodríguez-Valera,et al. Evaluation of prokaryotic diversity by restrictase digestion of 16S rDNA directly amplified from hypersaline environments , 1995 .
[35] S F Altschul,et al. Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases. , 1998, Trends in biochemical sciences.
[36] E. Feil. Small change: keeping pace with microevolution , 2004, Nature Reviews Microbiology.
[37] Friedhelm Pfeiffer,et al. The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity , 2006, BMC Genomics.
[38] R. Amann,et al. Salinibacter ruber gen. nov., sp. nov., a novel, extremely halophilic member of the Bacteria from saltern crystallizer ponds. , 2002, International journal of systematic and evolutionary microbiology.
[39] F. Blattner,et al. Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli , 2002, Proceedings of the National Academy of Sciences of the United States of America.