Draft Genome Sequence of Nitrobacter vulgaris Strain Ab1, a Nitrite-Oxidizing Bacterium

ABSTRACT Here, we present the 3.9-Mb draft genome sequence of Nitrobacter vulgaris strain Ab1, which was isolated from a sewage system in Hamburg, Germany. The analysis of its genome sequence will contribute to our knowledge of nitrite-oxidizing bacteria and acyl-homoserine lactone quorum sensing in nitrifying bacteria.

[1]  P. Bottomley,et al.  Quorum Quenching of Nitrobacter winogradskyi Suggests that Quorum Sensing Regulates Fluxes of Nitrogen Oxide(s) during Nitrification , 2016, mBio.

[2]  D. Laetsch,et al.  blobtools: blobtools v0.9.19.4 , 2016 .

[3]  Javier F. Tabima,et al.  Gall-ID: tools for genotyping gall-causing phytopathogenic bacteria , 2016, PeerJ.

[4]  P. Bottomley,et al.  Nitrite-Oxidizing Bacterium Nitrobacter winogradskyi Produces N-Acyl-Homoserine Lactone Autoinducers , 2015, Applied and Environmental Microbiology.

[5]  E. Spieck,et al.  Comparison of Oxidation Kinetics of Nitrite-Oxidizing Bacteria: Nitrite Availability as a Key Factor in Niche Differentiation , 2014, Applied and Environmental Microbiology.

[6]  M. Blaxter,et al.  Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots , 2013, Front. Genet..

[7]  Sergey I. Nikolenko,et al.  SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing , 2012, J. Comput. Biol..

[8]  E. Spieck,et al.  Metabolism and Genomics of Nitrite-Oxidizing Bacteria: Emphasis on Studies of Pure Cultures and of Nitrobacter Species , 2011 .

[9]  D. Paslier,et al.  Diversity, Environmental Genomics, and Ecophysiology of Nitrite-Oxidizing Bacteria , 2011 .

[10]  B. Ward Nitrification: An Introduction and Overview of the State of the Field , 2011 .

[11]  Betty H. Olson,et al.  Influence of physicochemical and operational parameters on Nitrobacter and Nitrospira communities in an aerobic activated sludge bioreactor. , 2010, Water research.

[12]  S. Recous,et al.  Shifts between Nitrospira- and Nitrobacter-like nitrite oxidizers underlie the response of soil potential nitrite oxidation to changes in tillage practices. , 2010, Environmental microbiology.

[13]  Samuel V. Angiuoli,et al.  Toward an online repository of Standard Operating Procedures (SOPs) for (meta)genomic annotation. , 2008, Omics : a journal of integrative biology.

[14]  P. Chain,et al.  Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter , 2008, Applied and Environmental Microbiology.

[15]  P. de Vos,et al.  The phylogeny of the genus Nitrobacter based on comparative rep-PCR, 16S rRNA and nitrite oxidoreductase gene sequence analysis. , 2007, Systematic and applied microbiology.

[16]  Miriam L. Land,et al.  Genome Sequence of the Chemolithoautotrophic Nitrite-Oxidizing Bacterium Nitrobacter winogradskyi Nb-255 , 2006, Applied and Environmental Microbiology.

[17]  E. Bock,et al.  A new facultatively nitrite oxidizing bacterium, Nitrobacter vulgaris sp. nov. , 2004, Archives of Microbiology.

[18]  J. Andrews,et al.  r- and K-Selection and Microbial Ecology , 1986 .