PASSEL: The PeptideAtlas SRMexperiment library
暂无分享,去创建一个
Eric W. Deutsch | Luis Mendoza | Nathalie Selevsek | David S. Campbell | Robert L. Moritz | Mi-Youn Brusniak | Ulrike Kusebauch | Ralph Schiess | Zhi Sun | Ruth Hüttenhain | Terry Farrah | Richard Kreisberg | R. Aebersold | U. Kusebauch | R. Moritz | Ruedi | E. Deutsch | D. Campbell | M. Brusniak | R. Kreisberg | N. Selevsek | R. Schiess | Ruth Hüttenhain | Zhi Sun | T. Farrah | Luis Mendoza | Aebersold
[1] R. Aebersold,et al. Mass spectrometry-based proteomics , 2003, Nature.
[2] Brendan MacLean,et al. Bioinformatics Applications Note Gene Expression Skyline: an Open Source Document Editor for Creating and Analyzing Targeted Proteomics Experiments , 2022 .
[3] Ruedi Aebersold,et al. High-throughput generation of selected reaction-monitoring assays for proteins and proteomes , 2010, Nature Methods.
[4] Nichole L. King,et al. Targeted Quantitative Analysis of Streptococcus pyogenes Virulence Factors by Multiple Reaction Monitoring*S , 2008, Molecular & Cellular Proteomics.
[5] Robertson Craig,et al. Open source system for analyzing, validating, and storing protein identification data. , 2004, Journal of proteome research.
[6] Ruedi Aebersold,et al. Using the Human Plasma PeptideAtlas to study human plasma proteins. , 2011, Methods in molecular biology.
[7] Henry H. N. Lam,et al. PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows , 2008, EMBO reports.
[8] Damon May,et al. MRMer, an Interactive Open Source and Cross-platform System for Data Extraction and Visualization of Multiple Reaction Monitoring Experiments*S⃞ , 2008, Molecular & Cellular Proteomics.
[9] Lennart Martens,et al. mzML—a Community Standard for Mass Spectrometry Data* , 2010, Molecular & Cellular Proteomics.
[10] Nichole L. King,et al. The PeptideAtlas Project , 2010, Proteome Bioinformatics.
[11] R. Aebersold,et al. A uniform proteomics MS/MS analysis platform utilizing open XML file formats , 2005, Molecular systems biology.
[12] Susan E Abbatiello,et al. Automated detection of inaccurate and imprecise transitions in peptide quantification by multiple reaction monitoring mass spectrometry. , 2010, Clinical chemistry.
[13] Ruedi Aebersold,et al. Options and considerations when selecting a quantitative proteomics strategy , 2010, Nature Biotechnology.
[14] Nichole L. King,et al. Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry , 2004, Genome Biology.
[15] Jingchun Chen,et al. ATAQS: A computational software tool for high throughput transition optimization and validation for selected reaction monitoring mass spectrometry , 2011, BMC Bioinformatics.
[16] R. Aebersold,et al. Selected reaction monitoring for quantitative proteomics: a tutorial , 2008, Molecular systems biology.
[17] Chris F. Taylor,et al. A common open representation of mass spectrometry data and its application to proteomics research , 2004, Nature Biotechnology.
[18] Jennifer A. Cham,et al. MRMaid-DB: a repository of published SRM transitions. , 2010, Journal of proteome research.
[19] Jayson A. Falkner,et al. Tranche: decentralized data storage for the proteomics community , 2007 .
[20] Lennart Martens,et al. PRIDE: The proteomics identifications database , 2005, Proteomics.
[21] R. Aebersold,et al. mProphet : A general and flexible data model and algorithm for automated SRM data processing and statistical error estimation , 2010 .
[22] Jennifer A Mead,et al. MRMaid, the Web-based Tool for Designing Multiple Reaction Monitoring (MRM) Transitions* , 2009, Molecular & Cellular Proteomics.
[23] R. Aebersold,et al. mProphet: automated data processing and statistical validation for large-scale SRM experiments , 2011, Nature Methods.
[24] Natalie I. Tasman,et al. A guided tour of the Trans‐Proteomic Pipeline , 2010, Proteomics.