Comparison and detection of total and available soil carbon fractions using visible/near infrared diffuse reflectance spectroscopy.

article Available carbon (C), measured as hot water extractable carbon (HC), has been suggested as an indicator to assess management effects on soil C fractions, transformations among C fractions, and carbon sequestration potential. Their upscaling to coarser scales has been hampered due to the cost and labor to measure C fractions. With the advent of visible/near-infrared-diffuse reflectance spectroscopy (VNIR-DRS) to infer on soil C fractions, new opportunities exist to combine sensor-based and geostatistical methods to estimate them across landscapes. Our research objectives were to (i) assess the accuracy of VNIR-DRS for estimating available C (HC) in soil, and (ii) compare interpolated HC estimates derived from laboratory measurements and VNIR-DRS derived estimates. The study site was within the Rio Grande floodplain in Quemado, Texas with mixed acreage of Arundo donax L. and Cynodon dactylon (L.) pers. Soil samples were taken in 10-cm depth increments from 0- to 50-cm depth, at 125 locations across a 34.5 ha field. Total C (TC, dry combustion), inorganic C (IC, modified pressure calcimeter), and HC (extraction at 80 °C) were measured and organic C (OC) was calculated by difference (TCIC). Partial least squares regression (PLSR) and boosted regression tree (RT) were used to relate TC, HC, IC, and OC to VNIR-DRS spectra. Ordinary kriging was used to interpolate HC derived from analytical measurements and the values derived from the best spectral estimation model (PLSR). All four C pools were estimated well using VNIR-DRS and PLSR (R

[1]  L. Schipper,et al.  Hot-water-soluble C as a simple measure of labile soil organic matter: the relationship with microbial biomass C , 1998 .

[2]  K. Shepherd,et al.  Global soil characterization with VNIR diffuse reflectance spectroscopy , 2006 .

[3]  CARBIS final report : detecting soil carbon and its spatial variability by imaging spectroscopy , 2007 .

[4]  M. Forina,et al.  Multivariate calibration. , 2007, Journal of chromatography. A.

[5]  D. Cozzolino,et al.  Potential of near-infrared reflectance spectroscopy and chemometrics to predict soil organic carbon fractions , 2006 .

[6]  L. Breiman Arcing classifier (with discussion and a rejoinder by the author) , 1998 .

[7]  Sabine Grunwald,et al.  Comparison of multivariate methods for inferential modeling of soil carbon using visible/near-infrared spectra , 2008 .

[8]  R. Lark,et al.  Geostatistics for Environmental Scientists , 2001 .

[9]  Daniel Cozzolino,et al.  Exploring the Use of near Infrared Reflectance Spectroscopy to Study Physical Properties and Microelements in Soils , 2003 .

[10]  L. A. Sherrod,et al.  Inorganic Carbon Analysis by Modified Pressure-Calcimeter Method , 2002 .

[11]  W. Parton,et al.  Analysis of factors controlling soil organic matter levels in Great Plains grasslands , 1987 .

[12]  R. Poppi,et al.  Determination of organic matter in soils by FTIR/diffuse reflectance and multivariate calibration , 1999 .

[13]  Anwar Ghani,et al.  Hot-water extractable carbon in soils: a sensitive measurement for determining impacts of fertilisation, grazing and cultivation , 2003 .

[14]  Craig S. T. Daughtry,et al.  Discriminating Crop Residues from Soil by Shortwave Infrared Reflectance , 2001 .

[15]  H. Beecher,et al.  The potential of near-infrared reflectance spectroscopy for soil analysis — a case study from the Riverine Plain of south-eastern Australia , 2002 .

[16]  Lutgarde M. C. Buydens,et al.  The potential of field spectroscopy for the assessment of sediment properties in river floodplains , 2003 .

[17]  R. F. Goddu,et al.  Spectra-Structure Correlations for Near-Infrared Region , 1960 .

[18]  Beth K. Gugino,et al.  Farmer-oriented assessment of soil quality using field, laboratory, and VNIR spectroscopy methods , 2008, Plant and Soil.

[19]  C. Hurburgh,et al.  Near-Infrared Reflectance Spectroscopy–Principal Components Regression Analyses of Soil Properties , 2001 .

[20]  D. Cozzolino,et al.  The potential of near-infrared reflectance spectroscopy to analyse soil chemical and physical characteristics , 2003, The Journal of Agricultural Science.

[21]  S. P. Ellis,et al.  Instability of least squares, least absolute deviation and least median of squares linear regression, with a comment by Stephen Portnoy and Ivan Mizera and a rejoinder by the author , 1998 .

[22]  Ingrid Kögel-Knabner,et al.  Soil organic matter fractions as early indicators for carbon stock changes under different land-use? , 2005 .

[23]  A. Savitzky,et al.  Smoothing and Differentiation of Data by Simplified Least Squares Procedures. , 1964 .

[24]  J. Friedman,et al.  Classification and Regression Trees (Wadsworth Statistics/Probability) , 1984 .

[25]  Leo Breiman,et al.  Classification and Regression Trees , 1984 .

[26]  Sabine Grunwald,et al.  Spectroscopic models of soil organic carbon in Florida, USA. , 2010, Journal of environmental quality.

[27]  T. Jarmer,et al.  Quantitative analysis of soil chemical properties with diffuse reflectance spectrometry and partial least-square regression: A feasibility study , 2003, Plant and Soil.

[28]  R. Lal Soil carbon sequestration to mitigate climate change , 2004 .

[29]  S. Grunwald,et al.  Carbon Mineralization and Labile Organic Carbon Pools in the Sandy Soils of a North Florida Watershed , 2009, Ecosystems.

[30]  Eyal Ben-Dor,et al.  Near-Infrared Analysis as a Rapid Method to Simultaneously Evaluate Several Soil Properties , 1995 .

[31]  H. Ramon,et al.  On-line measurement of some selected soil properties using a VIS–NIR sensor , 2007 .

[32]  D. Angers,et al.  Barley and alfalfa cropping effects on carbohydrate contents of a clay soil and its size fractions. , 1990 .

[33]  P. Williams,et al.  Near-Infrared Technology in the Agricultural and Food Industries , 1987 .

[34]  A. Johnston,et al.  Nitrogen fertilization management for no-till cereal production in the Canadian Great Plains: a review , 2001 .

[35]  Cheng-Wen Chang,et al.  NEAR-INFRARED REFLECTANCE SPECTROSCOPIC ANALYSIS OF SOIL C AND N , 2002 .

[36]  A. McBratney,et al.  Critical review of chemometric indicators commonly used for assessing the quality of the prediction of soil attributes by NIR spectroscopy , 2010 .

[37]  N. Comerford,et al.  Surface soil carbon size–density fractions altered by loblolly pine families and forest management intensity for a Spodosol in the southeastern US , 2008, Plant and Soil.

[38]  Z. Ouyang,et al.  The changes in soil organic matter in a forest-cultivation sequence traced by stable carbon isotopes , 2003 .

[39]  D. Heenan,et al.  Microbial-induced soil aggregate stability under different crop rotations , 1999, Biology and Fertility of Soils.

[40]  P. Miller,et al.  Validation requirements for diffuse reflectance soil characterization models with a case study of VNIR soil C prediction in Montana , 2005 .

[41]  J. van der Plicht,et al.  Soil organic matter dynamics after the conversion of arable land to pasture , 1999, Biology and Fertility of Soils.

[42]  G. McCarty,et al.  Mid-Infrared and Near-Infrared Diffuse Reflectance Spectroscopy for Soil Carbon Measurement , 2002 .

[43]  Sabine Grunwald,et al.  Modeling of Soil Organic Carbon Fractions Using Visible–Near‐Infrared Spectroscopy , 2009 .

[44]  K. Shepherd,et al.  Development of Reflectance Spectral Libraries for Characterization of Soil Properties , 2002 .

[45]  E. Gregorich,et al.  Biodegradability of soluble organic matter in maize-cropped soils , 2003 .

[46]  Alex B. McBratney,et al.  Simultaneous estimation of several soil properties by ultra-violet, visible, and near-infrared reflectance spectroscopy , 2003 .

[47]  A. Moldes,et al.  Amelioration of the physical properties of slate processing fines using grape marc compost and vermicompost. , 2009 .

[48]  Heitor Cantarella,et al.  Determination of organic matter in soil using near-infrared spectroscopy and partial least squares regression , 2002 .

[49]  G. McCarty,et al.  The potential of diffuse reflectance spectroscopy for the determination of carbon inventories in soils. , 2002, Environmental pollution.

[50]  J. Hummel,et al.  Reflectance technique for predicting soil organic matter. , 1980 .

[51]  D. W. Nelson,et al.  Total Carbon, Organic Carbon, and Organic Matter , 1983, SSSA Book Series.

[52]  R. V. Rossel,et al.  Visible, near infrared, mid infrared or combined diffuse reflectance spectroscopy for simultaneous assessment of various soil properties , 2006 .