Genetic diversity in global chicken breeds in relation to their genetic distances to wild populations

[1]  M. Tixier-Boichard,et al.  The origin and domestication of poultry species , 2020 .

[2]  H. Simianer,et al.  The SYNBREED chicken diversity panel: a global resource to assess chicken diversity at high genomic resolution , 2019, BMC Genomics.

[3]  Saber,et al.  Genetics of adaptation in modern chicken , 2019, PLoS genetics.

[4]  L. Fontanesi,et al.  Looking at genetic structure and selection signatures of the Mexican chicken population using single nucleotide polymorphism markers , 2018, Poultry science.

[5]  H. Simianer,et al.  Efficiency of different strategies to mitigate ascertainment bias when using SNP panels in diversity studies , 2018, BMC Genomics.

[6]  Hans H. Cheng,et al.  A New Chicken Genome Assembly Provides Insight into Avian Genome Structure , 2016, G3: Genes, Genomes, Genetics.

[7]  Adam Powell,et al.  The genetic prehistory of domesticated cattle from their origin to the spread across Europe , 2015, BMC Genetics.

[8]  Carson C Chow,et al.  Second-generation PLINK: rising to the challenge of larger and richer datasets , 2014, GigaScience.

[9]  J. Lenstra,et al.  Revisiting AFLP fingerprinting for an unbiased assessment of genetic structure and differentiation of taurine and zebu cattle , 2014, BMC Genetics.

[10]  Noah A. Rosenberg,et al.  Population Structure in a Comprehensive Genomic Data Set on Human Microsatellite Variation , 2013, G3: Genes, Genomes, Genetics.

[11]  J. Woolliams,et al.  Edinburgh Research Explorer Development of a high density 600K SNP genotyping array for chicken , 2022 .

[12]  O. Hanotte,et al.  Analysis of genome-wide structure, diversity and fine mapping of Mendelian traits in traditional and village chickens , 2012, Heredity.

[13]  Hong-Mei Zhang,et al.  Genome‐wide identification of SNPs in microRNA genes and the SNP effects on microRNA target binding and biogenesis , 2012, Human mutation.

[14]  M. Tixier-Boichard,et al.  Chicken domestication: from archeology to genomics. , 2011, Comptes rendus biologies.

[15]  O. Hanotte,et al.  Mitochondrial DNA reveals multiple introductions of domestic chicken in East Africa. , 2011, Molecular phylogenetics and evolution.

[16]  Hyunsoo Kim,et al.  Single-nucleotide polymorphisms inside microRNA target sites influence tumor susceptibility. , 2010, Cancer research.

[17]  Y. Ishida,et al.  Sewall Wright and Gustave Malécot on Isolation by Distance , 2009, Philosophy of Science.

[18]  J. Long,et al.  The global pattern of gene identity variation reveals a history of long-range migrations, bottlenecks, and local mate exchange: implications for biological race. , 2009, American journal of physical anthropology.

[19]  Pornpimol Charoentong,et al.  ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks , 2009, Bioinform..

[20]  B. Browning,et al.  A unified approach to genotype imputation and haplotype-phase inference for large data sets of trios and unrelated individuals. , 2009, American journal of human genetics.

[21]  Serafim Batzoglou,et al.  A serial founder effect model for human settlement out of Africa , 2009, Proceedings of the Royal Society B: Biological Sciences.

[22]  S. Weigend,et al.  Assessment of Population Structure and Genetic Diversity of 15 Chinese Indigenous Chicken Breeds Using Microsatellite Markers , 2008 .

[23]  L. Quintana-Murci,et al.  Natural selection has driven population differentiation in modern humans , 2008, Nature Genetics.

[24]  M. Feldman,et al.  Worldwide Human Relationships Inferred from Genome-Wide Patterns of Variation , 2008 .

[25]  Sohini Ramachandran,et al.  Support from the relationship of genetic and geographic distance in human populations for a serial founder effect originating in Africa. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[26]  F. Balloux,et al.  Geography predicts neutral genetic diversity of human populations , 2005, Current Biology.

[27]  P. Shannon,et al.  Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.

[28]  Brad T. Sherman,et al.  DAVID: Database for Annotation, Visualization, and Integrated Discovery , 2003, Genome Biology.

[29]  V. Lehto,et al.  Sequence of a chicken cDNA encoding a GRB2 protein. , 1993, Gene.

[30]  C. Stringer,et al.  Genetic and fossil evidence for the origin of modern humans. , 1988, Science.

[31]  B S Weir,et al.  Estimation of the coancestry coefficient: basis for a short-term genetic distance. , 1983, Genetics.

[32]  S. Wright,et al.  Isolation by Distance. , 1943, Genetics.

[33]  Hilde van der Togt,et al.  Publisher's Note , 2003, J. Netw. Comput. Appl..

[34]  L. Cavalli-Sforza,et al.  ANALYSIS OF HUMAN EVOLUTION UNDER RANDOM GENETIC DRIFT. , 1964, Cold Spring Harbor symposia on quantitative biology.