Current State of the Art for Statistical Modelling of Species Distributions
暂无分享,去创建一个
Falk Huettmann | Samuel A. Cushman | Jeffrey S. Evans | Troy M. Hegel | J. Evans | S. Cushman | F. Huettmann | T. Hegel
[1] David B. Dunson,et al. Bayesian Data Analysis , 2010 .
[2] Vojislav Kecman,et al. Support Vector Machines – An Introduction , 2005 .
[3] P. McCullagh,et al. Generalized Linear Models , 1972, Predictive Analytics.
[4] Leo Breiman,et al. Bagging Predictors , 1996, Machine Learning.
[5] DANA L. THOMAS,et al. Study Designs and Tests for Comparing Resource Use and Availability II , 2006 .
[6] Glenn De'ath,et al. Classification and regression trees: a powerful yet simple technique for the analysis of complex ecological data , 2000 .
[7] Ravi Kothari,et al. DECISION TREES FOR CLASSIFICATION: A REVIEW AND SOME NEW RESULTS , 2001 .
[8] Radu V. Craiu,et al. Inference Methods for the Conditional Logistic Regression Model with Longitudinal Data , 2008, Biometrical journal. Biometrische Zeitschrift.
[9] Trevor Hastie,et al. Generalized linear and generalized additive models in studies of species distributions: setting the scene , 2002 .
[10] Chris J. Johnson,et al. Relationship between resource selection, distribution, and abundance: a test with implications to theory and conservation , 2008, Population Ecology.
[11] Subhash R Lele,et al. Weighted distributions and estimation of resource selection probability functions. , 2006, Ecology.
[12] Devin L. Johnson,et al. A Bayesian Random Effects Discrete-Choice Model for Resource Selection: Population-Level Selection Inference , 2006 .
[13] Jacob Cohen,et al. Weighted kappa: Nominal scale agreement provision for scaled disagreement or partial credit. , 1968 .
[14] D. Jachowski,et al. Resource selection by black-footed ferrets in relation to the spatial distribution of prairie dogs , 2007 .
[15] Darryl I MacKenzie,et al. Sampling design trade-offs in occupancy studies with imperfect detection: examples and software. , 2007, Ecological applications : a publication of the Ecological Society of America.
[16] David R. Anderson,et al. Advanced distance sampling , 2004 .
[17] Bryan F. J. Manly,et al. Assessing habitat selection when availability changes , 1996 .
[18] Miroslav Dudík,et al. Modeling of species distributions with Maxent: new extensions and a comprehensive evaluation , 2008 .
[19] A. Peterson,et al. New developments in museum-based informatics and applications in biodiversity analysis. , 2004, Trends in ecology & evolution.
[20] Mike P. Austin,et al. Continuum Concept, Ordination Methods, and Niche Theory , 1985 .
[21] S. Levin. The problem of pattern and scale in ecology , 1992 .
[22] J. Evans,et al. Gradient modeling of conifer species using random forests , 2009, Landscape Ecology.
[23] Scott E. Nielsen,et al. Can models of presence‐absence be used to scale abundance? Two case studies considering extremes in life history , 2005 .
[24] D. MacKenzie. WHAT ARE THE ISSUES WITH PRESENCE–ABSENCE DATA FOR WILDLIFE MANAGERS? , 2005 .
[25] Hugh P Possingham,et al. Zero tolerance ecology: improving ecological inference by modelling the source of zero observations. , 2005, Ecology letters.
[26] L. Ball,et al. AN OCCUPANCY MODELING APPROACH TO EVALUATING A PALM SPRINGS GROUND SQUIRREL HABITAT MODEL , 2005 .
[27] David R. Anderson,et al. Model selection and multimodel inference : a practical information-theoretic approach , 2003 .
[28] Aaron M. Ellison,et al. Bayesian inference in ecology , 2004 .
[29] Mark S. Boyce,et al. Modelling distribution and abundance with presence‐only data , 2006 .
[30] C. Dormann. Effects of incorporating spatial autocorrelation into the analysis of species distribution data , 2007 .
[31] David W. Hosmer,et al. Applied Logistic Regression , 1991 .
[32] Atle Mysterud,et al. Density dependent and temporal variability in habitat selection by a large herbivore; an experimental approach , 2009 .
[33] A. Peterson,et al. Effects of sample size on the performance of species distribution models , 2008 .
[34] Teuvo Kohonen,et al. Self-Organizing Maps , 2010 .
[35] D. MacKenzie. Modeling the Probability of Resource Use: The Effect of, and Dealing with, Detecting a Species Imperfectly , 2006 .
[36] G. Casella,et al. Explaining the Gibbs Sampler , 1992 .
[37] F. Huettmann,et al. Large-scale effects on the spatial distribution of seabirds in the Northwest Atlantic , 2006, Landscape Ecology.
[38] Mary Kynn,et al. Eliciting Expert Knowledge for Bayesian Logistic Regression in Species Habitat Modelling , 2005 .
[39] Andrew Thomas,et al. WinBUGS - A Bayesian modelling framework: Concepts, structure, and extensibility , 2000, Stat. Comput..
[40] S. Manel,et al. Evaluating presence-absence models in ecology: the need to account for prevalence , 2001 .
[41] Cameron L. Aldridge,et al. Application of random effects to the study of resource selection by animals. , 2006, The Journal of animal ecology.
[42] T. Hastie,et al. Comparative performance of generalized additive models and multivariate adaptive regression splines for statistical modelling of species distributions , 2006 .
[43] Robert P. Anderson,et al. Evaluating predictive models of species’ distributions: criteria for selecting optimal models , 2003 .
[44] J. Michael Scott,et al. Predicting Species Occurrences: Issues of Accuracy and Scale , 2002 .
[45] Walter Krämer,et al. Review of Modern applied statistics with S, 4th ed. by W.N. Venables and B.D. Ripley. Springer-Verlag 2002 , 2003 .
[46] M. Boyce,et al. Relating populations to habitats using resource selection functions. , 1999, Trends in ecology & evolution.
[47] M. Austin. Species distribution models and ecological theory: A critical assessment and some possible new approaches , 2007 .
[48] STEVEN W. BUSKIRK,et al. Metrics for Studies of Resource Selection , 2006 .
[49] W. Sousa. The Role of Disturbance in Natural Communities , 1984 .
[50] D. Bates,et al. Mixed-Effects Models in S and S-PLUS , 2001 .
[51] D. Padilla,et al. Ecological neighborhoods: scaling environmental patterns , 1987 .
[52] G. De’ath,et al. CLASSIFICATION AND REGRESSION TREES: A POWERFUL YET SIMPLE TECHNIQUE FOR ECOLOGICAL DATA ANALYSIS , 2000 .
[53] Pravin K. Trivedi,et al. Regression Analysis of Count Data , 1998 .
[54] Joshua J. Millspaugh,et al. Modeling resource selection using polytomous logistic regression and kernel density estimates , 2008, Environmental and Ecological Statistics.
[55] Joshua J. Millspaugh,et al. THE APPLICATION OF DISCRETE CHOICE MODELS TO WILDLIFE RESOURCE SELECTION STUDIES , 1999 .
[56] Ali S. Hadi,et al. Regression Analysis by Example: Chatterjee/Regression , 2006 .
[57] S. Ferrier,et al. Extended statistical approaches to modelling spatial pattern in biodiversity in northeast New South Wales. I. Species-level modelling , 2004, Biodiversity & Conservation.
[58] H. Pulliam. On the relationship between niche and distribution , 2000 .
[59] RYAN M. NIELSON,et al. Winter Habitat Selection of Mule Deer Before and During Development of a Natural Gas Field , 2006 .
[60] W. Thuiller,et al. Predicting species distribution: offering more than simple habitat models. , 2005, Ecology letters.
[61] WESLEY M. HOCHACHKA,et al. Data-Mining Discovery of Pattern and Process in Ecological Systems , 2007 .
[62] Jane Elith,et al. Predicting species distributions from museum and herbarium records using multiresponse models fitted with multivariate adaptive regression splines , 2007 .
[63] Mark S. Boyce,et al. A quantitative approach to conservation planning: using resource selection functions to map the distribution of mountain caribou at multiple spatial scales , 2004 .
[64] W. Baker. Longterm response of disturbance landscapes to human intervention and global change , 1995, Landscape Ecology.
[65] J. Ross Quinlan,et al. C4.5: Programs for Machine Learning , 1992 .
[66] A. Hirzel,et al. Ecological niche modelling of two cryptic bat species calls for a reassessment of their conservation status , 2007 .
[67] N. Crookston,et al. Empirical Analyses of Plant‐Climate Relationships for the Western United States , 2006, International Journal of Plant Sciences.
[68] J. Andrew Royle,et al. ESTIMATING SITE OCCUPANCY RATES WHEN DETECTION PROBABILITIES ARE LESS THAN ONE , 2002, Ecology.
[69] Aboul Ella Hassanien,et al. Applications of Computational Intelligence in Biology: Current Trends and Open Problems , 2008, Applications of Computational Intelligence in Biology.
[70] Joshua J. Millspaugh,et al. Radio Tracking and Animal Populations , 2001 .
[71] Robert A. Gitzen,et al. Analysis of Animal Space Use and Movements , 2001 .
[72] B A Wintle,et al. Modeling species-habitat relationships with spatially autocorrelated observation data. , 2006, Ecological applications : a publication of the Ecological Society of America.
[73] Tarantola Stefano,et al. Sensitivity Analysis on Spatial Models: a New Approach , 2006 .
[74] A. Peterson,et al. INTERPRETATION OF MODELS OF FUNDAMENTAL ECOLOGICAL NICHES AND SPECIES' DISTRIBUTIONAL AREAS , 2005 .
[75] Francesca Bona,et al. Bayesian modelling procedures for the evaluation of changes in wildlife habitat suitability: a case study of roe deer in the Italian Alps. , 2007 .
[76] B. Manly,et al. Resource selection by animals: statistical design and analysis for field studies. , 1994 .
[77] Uygar Özesmi,et al. An artificial neural network approach to spatial habitat modelling with interspecific interaction , 1999 .
[78] J. Elder. The Generalization Paradox of Ensembles , 2003 .
[79] Nicholas J. Aebischer,et al. Compositional Analysis of Habitat Use From Animal Radio-Tracking Data , 1993 .
[80] Simon Ferrier,et al. Evaluating the predictive performance of habitat models developed using logistic regression , 2000 .
[81] D. Lindenmayer,et al. Modelling the abundance of rare species: statistical models for counts with extra zeros , 1996 .
[82] J. Elith,et al. Sensitivity of predictive species distribution models to change in grain size , 2007 .
[83] A. Peterson. Predicting the Geography of Species’ Invasions via Ecological Niche Modeling , 2003, The Quarterly Review of Biology.
[84] Jane Elith,et al. Comparing species abundance models , 2006 .
[85] Leo Breiman,et al. Classification and Regression Trees , 1984 .
[86] A. Prasad,et al. Newer Classification and Regression Tree Techniques: Bagging and Random Forests for Ecological Prediction , 2006, Ecosystems.
[87] A. Hirzel,et al. Evaluating the ability of habitat suitability models to predict species presences , 2006 .
[88] P. White. Pattern, process, and natural disturbance in vegetation , 1979, The Botanical Review.
[89] A. Townsend Peterson,et al. Novel methods improve prediction of species' distributions from occurrence data , 2006 .
[90] Shanshan Wu,et al. Building statistical models to analyze species distributions. , 2006, Ecological applications : a publication of the Ecological Society of America.
[91] Jane Elith,et al. The evaluation strip: A new and robust method for plotting predicted responses from species distribution models , 2005 .
[92] Robert A. Gitzen,et al. Analysis of Resource Selection Using Utilization Distributions , 2006 .
[93] Jorge Soberón. Grinnellian and Eltonian niches and geographic distributions of species. , 2007, Ecology letters.
[94] J. S. Long,et al. Regression Models for Categorical and Limited Dependent Variables , 1997 .
[95] R. Real,et al. AUC: a misleading measure of the performance of predictive distribution models , 2008 .
[96] A. Townsend Peterson,et al. Transferability and model evaluation in ecological niche modeling: a comparison of GARP and Maxent , 2007 .
[97] M. DALE STRICKLAND,et al. Introduction to the Special Section on Resource Selection , 2006 .
[98] William N. Venables,et al. Modern Applied Statistics with S , 2010 .
[99] Trevor S. Wiens,et al. Three way k-fold cross-validation of resource selection functions , 2008 .
[100] Wayne M. Getz,et al. LoCoH: Nonparameteric Kernel Methods for Constructing Home Ranges and Utilization Distributions , 2007, PloS one.
[101] David R. B. Stockwell,et al. The GARP modelling system: problems and solutions to automated spatial prediction , 1999, Int. J. Geogr. Inf. Sci..
[102] R. Leemans,et al. Comparing global vegetation maps with the Kappa statistic , 1992 .
[103] James S. Clark,et al. Why environmental scientists are becoming Bayesians , 2004 .
[104] Sean C. Mitchell,et al. How useful is the concept of habitat? – a critique , 2005 .
[105] Wayne M. Getz,et al. A local nearest-neighbor convex-hull construction of home ranges and utilization distributions , 2004 .
[106] S. M. Glenn,et al. Effects of scale and disturbance on rates of immigration and extinction of species in prairies , 1992 .
[107] Julian D Olden,et al. Machine Learning Methods Without Tears: A Primer for Ecologists , 2008, The Quarterly Review of Biology.
[108] Corinne Martin,et al. Modelling species distributions using regression quantiles , 2007 .
[109] Darryl I. MacKenzie,et al. Designing occupancy studies: general advice and allocating survey effort , 2005 .
[110] James S. Clark,et al. Hierarchical Modelling for the Environmental Sciences: Statistical Methods and Applications , 2006 .
[111] Clément Calenge,et al. The package “adehabitat” for the R software: A tool for the analysis of space and habitat use by animals , 2006 .
[112] J. Blair,et al. Modulation of diversity by grazing and mowing in native tallgrass prairie , 1998, Science.
[113] A. Watt,et al. Pattern and process in the plant community , 1947 .
[114] David J. Hand,et al. A Simple Generalisation of the Area Under the ROC Curve for Multiple Class Classification Problems , 2001, Machine Learning.
[115] Simon Ferrier,et al. The practical value of modelling relative abundance of species for regional conservation planning: a case study , 2001 .
[116] S. Ferrier. Mapping spatial pattern in biodiversity for regional conservation planning: where to from here? , 2002, Systematic biology.
[117] Kevin J Gaston,et al. Estimating Species Abundance from Occurrence , 2000, The American Naturalist.
[118] J. Drake,et al. Modelling ecological niches with support vector machines , 2006 .
[119] Gerald E. Lang,et al. Vegetational Patterns and Processes in the Balsam Fir Zone, White Mountains New Hampshire , 1979 .
[120] TRENT L. McDONALD,et al. Discrete-Choice Modeling in Wildlife Studies Exemplified by Northern Spotted Owl Nighttime Habitat Selection , 2006 .
[121] T. Kneib,et al. BayesX: Analyzing Bayesian Structural Additive Regression Models , 2005 .
[122] A. Hirzel,et al. Which is the optimal sampling strategy for habitat suitability modelling , 2002 .
[123] A. Townsend Peterson,et al. Rethinking receiver operating characteristic analysis applications in ecological niche modeling , 2008 .
[124] Stan Boutin,et al. Relating predation mortality to broad‐scale habitat selection , 2005 .
[125] M. Boyce,et al. Evaluating resource selection functions , 2002 .
[126] D. Chessel,et al. ECOLOGICAL-NICHE FACTOR ANALYSIS: HOW TO COMPUTE HABITAT-SUITABILITY MAPS WITHOUT ABSENCE DATA? , 2002 .
[127] Leo Breiman,et al. Statistical Modeling: The Two Cultures (with comments and a rejoinder by the author) , 2001 .
[128] Tom Fawcett,et al. An introduction to ROC analysis , 2006, Pattern Recognit. Lett..
[129] W. Willett,et al. Misinterpretation and misuse of the kappa statistic. , 1987, American journal of epidemiology.
[130] R. Tibshirani,et al. Discriminant Analysis by Gaussian Mixtures , 1996 .
[131] Robert P. Anderson,et al. Maximum entropy modeling of species geographic distributions , 2006 .
[132] David Fletcher,et al. Modelling skewed data with many zeros: A simple approach combining ordinary and logistic regression , 2005, Environmental and Ecological Statistics.
[133] Jacob Cohen. A Coefficient of Agreement for Nominal Scales , 1960 .
[134] S. Wood. Generalized Additive Models: An Introduction with R , 2006 .
[135] B. V. Horne,et al. DENSITY AS A MISLEADING INDICATOR OF HABITAT QUALITY , 1983 .
[136] Chris J. Johnson,et al. Resource Selection Functions Based on Use–Availability Data: Theoretical Motivation and Evaluation Methods , 2006 .
[137] S. Chatterjee,et al. Regression Analysis by Example , 1979 .
[138] A. Townsend Peterson,et al. The influence of spatial errors in species occurrence data used in distribution models , 2007 .
[139] A. Welsh,et al. Generalized additive modelling and zero inflated count data , 2002 .
[140] Falk Huettmann,et al. A large-scale model for the at-sea distribution and abundance of Marbled Murrelets (Brachyramphus marmoratus) during the breeding season in coastal British Columbia, Canada , 2004 .
[141] R. Whittaker. Communities and Ecosystems , 1975 .
[142] M. McCarthy. Bayesian Methods for Ecology: Frontmatter , 2007 .
[143] J. Wiens. Spatial Scaling in Ecology , 1989 .
[144] Lipo Wang. Support vector machines : theory and applications , 2005 .
[145] B. Cade,et al. A gentle introduction to quantile regression for ecologists , 2003 .
[146] Joshua J. Millspaugh,et al. RELATING RESOURCES TO A PROBABILISTIC MEASURE OF SPACE USE: FOREST FRAGMENTS AND STELLER'S JAYS , 2004 .
[147] Douglas H. Johnson. THE COMPARISON OF USAGE AND AVAILABILITY MEASUREMENTS FOR EVALUATING RESOURCE PREFERENCE , 1980 .
[148] Andrew Gelman,et al. Data Analysis Using Regression and Multilevel/Hierarchical Models , 2006 .
[149] J. Harte,et al. Maximum entropy and the state-variable approach to macroecology. , 2008, Ecology.
[150] Antoine Guisan,et al. Predictive habitat distribution models in ecology , 2000 .
[151] John Bell,et al. Application of classification trees to the habitat preference of upland birds , 1996 .
[152] Bryan F. J. Manly,et al. The Use of Discrete-Choice Models for Evaluating Resource Selection , 1998 .
[153] Falk Huettmann,et al. Using TreeNet for Identifying Management Thresholds of Mantled Howling Monkeys' Habitat Preferences on Ometepe Island, Nicaragua, on a Tree and Home Range Scale , 2007 .
[154] B. Worton. Kernel methods for estimating the utilization distribution in home-range studies , 1989 .
[155] S. Cherry,et al. USE AND INTERPRETATION OF LOGISTIC REGRESSION IN HABITAT-SELECTION STUDIES , 2004 .
[156] Mark S Boyce,et al. Lifetime reproductive success and density-dependent, multi-variable resource selection , 2006, Proceedings of the Royal Society B: Biological Sciences.
[157] Maggi Kelly,et al. Support vector machines for predicting distribution of Sudden Oak Death in California , 2005 .
[158] David Paull,et al. Machine learning of poorly predictable ecological data , 2006 .
[159] David Afshartous,et al. Avoiding ‘data snooping’ in multilevel and mixed effects models , 2007 .
[160] Kevin McGarigal,et al. Hierarchical, Multi-scale decomposition of species-environment relationships , 2002, Landscape Ecology.
[161] John Bell,et al. A review of methods for the assessment of prediction errors in conservation presence/absence models , 1997, Environmental Conservation.
[162] Jerry Nedelman,et al. Book review: “Bayesian Data Analysis,” Second Edition by A. Gelman, J.B. Carlin, H.S. Stern, and D.B. Rubin Chapman & Hall/CRC, 2004 , 2005, Comput. Stat..
[163] Jerome H. Friedman. Multivariate adaptive regression splines (with discussion) , 1991 .
[164] Michel Loreau,et al. Limitations of entropy maximization in ecology , 2008 .
[165] C. Braak. Canonical Correspondence Analysis: A New Eigenvector Technique for Multivariate Direct Gradient Analysis , 1986 .
[166] R. Powell,et al. An Evaluation of the Accuracy of Kernel Density Estimators for Home Range Analysis , 1996 .
[167] W. Cooper,et al. The Climax Forest of Isle Royale, Lake Superior, and Its Development. I , 1913, Botanical Gazette.
[168] R. Koenker. Quantile Regression: Name Index , 2005 .
[169] J LunnDavid,et al. WinBUGS A Bayesian modelling framework , 2000 .
[170] Leo Breiman,et al. Statistical Modeling: The Two Cultures (with comments and a rejoinder by the author) , 2001, Statistical Science.
[171] B. Cade,et al. QUANTILE REGRESSION REVEALS HIDDEN BIAS AND UNCERTAINTY IN HABITAT MODELS , 2005 .
[172] A. Peterson. Uses and requirements of ecological niche models and related distributional models , 2006 .
[173] Chih-Jen Lin,et al. A Practical Guide to Support Vector Classication , 2008 .
[174] M. Kearney,et al. Habitat, environment and niche: what are we modelling? , 2006 .
[175] Harold A. Mooney,et al. Disturbance and Ecosystems , 1983, Ecological Studies.
[176] David C. Schneider,et al. Quantitative Ecology: Spatial and Temporal Scaling , 1994 .
[177] S. Wood,et al. GAMs with integrated model selection using penalized regression splines and applications to environmental modelling , 2002 .
[178] R. Swihart,et al. Absent or undetected? Effects of non-detection of species occurrence on wildlife-habitat models , 2004 .
[179] John M. Morton,et al. Using Random Forests to Provide Predicted Species Distribution Maps as a Metric for Ecological Inventory & Monitoring Programs , 2008, Applications of Computational Intelligence in Biology.
[180] G. Stenhouse,et al. Modeling grizzly bear habitats in the Yellowhead ecosystem of Alberta: taking autocorrelation seriously , 2002 .
[181] Nitesh V. Chawla,et al. SMOTEBoost: Improving Prediction of the Minority Class in Boosting , 2003, PKDD.
[182] A. Pitman,et al. Where will species go? Incorporating new advances in climate modelling into projections of species distributions , 2007 .
[183] J. Friedman. Multivariate adaptive regression splines , 1990 .
[184] H. Possingham,et al. IMPROVING PRECISION AND REDUCING BIAS IN BIOLOGICAL SURVEYS: ESTIMATING FALSE‐NEGATIVE ERROR RATES , 2003 .
[185] T. A. Hanley,et al. Habitat evaluation: do use/availability data reflect carrying capacity? , 1990 .
[186] J. Elith,et al. Using generalized dissimilarity modelling to analyse and predict patterns of beta diversity in regional biodiversity assessment , 2007 .
[187] T. Hastie,et al. Using multivariate adaptive regression splines to predict the distributions of New Zealand ’ s freshwater diadromous fish , 2005 .
[188] Sophia Rabe-Hesketh,et al. Generalized latent variable models: multilevel, longitudinal, and structural equation models , 2004 .
[189] A. Hirzel,et al. Ecological requirements of reintroduced species and the implications for release policy: the case of the bearded vulture , 2004 .