Constraint-Based Evolutionary Local Search for Protein Structures with Secondary Motifs
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[1] Kathleen Steinhöfel,et al. A hybrid approach to protein folding problem integrating constraint programming with local search , 2010, BMC Bioinformatics.
[2] Alessandro Dal Palù,et al. Heuristics, optimizations, and parallelism for protein structure prediction in CLP(FD) , 2005, PPDP '05.
[3] Abdul Sattar,et al. An efficient encoding for simplified protein structure prediction using genetic algorithms , 2013, 2013 IEEE Congress on Evolutionary Computation.
[4] Andrzej Kolinski,et al. A minimal proteinlike lattice model: an alpha-helix motif. , 2005, The Journal of chemical physics.
[5] Sue Whitesides,et al. A complete and effective move set for simplified protein folding , 2003, RECOMB '03.
[6] M. Levitt,et al. The complexity and accuracy of discrete state models of protein structure. , 1995, Journal of molecular biology.
[7] Federico Fogolari,et al. Amino acid empirical contact energy definitions for fold recognition in the space of contact maps , 2003, BMC Bioinformatics.
[8] Roberto Rossi,et al. Cost-Based Filtering for Stochastic Inventory Control , 2006, CSCLP.
[9] R. Jernigan,et al. Estimation of effective interresidue contact energies from protein crystal structures: quasi-chemical approximation , 1985 .
[10] Agostino Dovier,et al. Using Secondary Structure Information for Protein Folding in CLP(FD) , 2002, Electron. Notes Theor. Comput. Sci..
[11] J. Skolnick,et al. A minimal physically realistic protein-like lattice model: designing an energy landscape that ensures all-or-none folding to a unique native state. , 2003, Biophysical journal.
[12] Alessandro Dal Palù,et al. A constraint solver for discrete lattices, its parallelization, and application to protein structure prediction , 2007 .
[13] Andrzej Kolinski,et al. Protein fragment reconstruction using various modeling techniques , 2003, J. Comput. Aided Mol. Des..
[14] M. Levitt,et al. A lattice model for protein structure prediction at low resolution. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[15] Fernando Niño,et al. A novel ab-initio genetic-based approach for protein folding prediction , 2007, GECCO '07.
[16] Michael J. Maher,et al. Kangaroo: An Efficient Constraint-Based Local Search System Using Lazy Propagation , 2011, CP.
[17] Charlotte M. Deane,et al. Producing High-Accuracy Lattice Models from Protein Atomic Coordinates Including Side Chains , 2012, Adv. Bioinformatics.
[18] Alessandro Dal Palù,et al. Constraint Logic Programming approach to protein structure prediction , 2004, BMC Bioinformatics.
[19] Kathleen Steinhöfel,et al. Population-based local search for protein folding simulation in the MJ energy model and cubic lattices , 2009, Comput. Biol. Chem..
[20] Liam J. McGuffin,et al. The PSIPRED protein structure prediction server , 2000, Bioinform..
[21] J. Skolnick,et al. Reduced models of proteins and their applications , 2004 .
[22] Jeffrey Skolnick,et al. Fast procedure for reconstruction of full‐atom protein models from reduced representations , 2008, J. Comput. Chem..
[23] J. Skolnick,et al. Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures , 2000 .
[24] Abdul Sattar,et al. Mixed Heuristic Local Search for Protein Structure Prediction , 2013, AAAI.
[25] Abdul Sattar,et al. Simplified Lattice Models for Protein Structure Prediction: How Good Are They? , 2013, AAAI.
[26] Alessandro Dal Palù,et al. Protein Folding in CLP(FD) with Empirical Contact Energies , 2003, CSCLP.