Genetic studies of human diversity in East Asia

East Asia is one of the most important regions for studying evolution and genetic diversity of human populations. Recognizing the relevance of characterizing the genetic diversity and structure of East Asian populations for understanding their genetic history and designing and interpreting genetic studies of human diseases, in recent years researchers in China have made substantial efforts to collect samples and generate data especially for markers on Y chromosomes and mtDNA. The hallmark of these efforts is the discovery and confirmation of consistent distinction between northern and southern East Asian populations at genetic markers across the genome. With the confirmation of an African origin for East Asian populations and the observation of a dominating impact of the gene flow entering East Asia from the south in early human settlement, interpretation of the north–south division in this context poses the challenge to the field. Other areas of interest that have been studied include the gene flow between East Asia and its neighbouring regions (i.e. Central Asia, the Sub-continent, America and the Pacific Islands), the origin of Sino-Tibetan populations and expansion of the Chinese.

[1]  P. Underhill,et al.  A novel Y-chromosome variant puts an upper limit on the timing of first entry into the Americas. , 2003, American journal of human genetics.

[2]  M. Jobling,et al.  Evaluation of Y-chromosomal STRs: a multicenter study , 1997, International Journal of Legal Medicine.

[3]  T. Zhao,et al.  Gm and Km allotypes in 74 Chinese populations: a hypothesis of the origin of the Chinese nation , 1989, Human Genetics.

[4]  Hans-Jürgen Bandelt,et al.  Phylogeny of east Asian mitochondrial DNA lineages inferred from complete sequences. , 2003, American journal of human genetics.

[5]  L. Jin,et al.  Dispersion of human Y chromosome haplotypes based on five microsatellites in global populations. , 1996, Genome research.

[6]  Q. Kong,et al.  Different matrilineal contributions to genetic structure of ethnic groups in the silk road region in china. , 2004, Molecular biology and evolution.

[7]  M. Stoneking,et al.  Mitochondrial DNA and human evolution , 1987, Nature.

[8]  D. Wallace,et al.  Mitochondrial DNA variation in human evolution and disease. , 1999, Gene.

[9]  T. Kivisild,et al.  Phylogeographic differentiation of mitochondrial DNA in Han Chinese. , 2002, American journal of human genetics.

[10]  A. Torroni,et al.  Southeast Asian mitochondrial DNA analysis reveals genetic continuity of ancient mongoloid migrations. , 1992, Genetics.

[11]  M. Hammer,et al.  Paternal population history of East Asia: sources, patterns, and microevolutionary processes. , 2001, American journal of human genetics.

[12]  Michael F. Hammer,et al.  A recent common ancestry for human Y chromosomes , 1995, Nature.

[13]  Li Jin,et al.  Multiple origins of Tibetan Y chromosomes , 2000, Human Genetics.

[14]  Alberto Piazza,et al.  The History and Geography of Human Genes: Abridged paperback Edition , 1996 .

[15]  B. Su,et al.  Natives or immigrants: modern human origin in east asia , 2000, Nature Reviews Genetics.

[16]  O. Semino,et al.  Pre-Caucasoid and Caucasoid genetic features of the Indian population, revealed by mtDNA polymorphisms. , 1996, American journal of human genetics.

[17]  Q. Kong,et al.  The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes. , 2006, Molecular biology and evolution.

[18]  N. Saitou,et al.  Genetic structure of a 2,500-year-old human population in China and its spatiotemporal changes. , 2000, Molecular biology and evolution.

[19]  L. Jin,et al.  Polynesian origins: insights from the Y chromosome. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[20]  C. Tyler-Smith,et al.  Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor. , 2004, American journal of human genetics.

[21]  L. Cavalli-Sforza,et al.  High resolution of human evolutionary trees with polymorphic microsatellites , 1994, Nature.

[22]  L. Cavalli-Sforza The Human Genome Diversity Project: past, present and future , 2005, Nature Reviews Genetics.

[23]  J. Long,et al.  Population genetics, history, and health patterns in native americans. , 2004, Annual review of genomics and human genetics.

[24]  Hans-Jürgen Bandelt,et al.  Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia. , 2004, American journal of human genetics.

[25]  L. Jin,et al.  Genetic relationship of populations in China. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[26]  Jo-fu Tu,et al.  Chinese surnames and the genetic differences between North and South China , 1992 .

[27]  W. Knowler,et al.  Dramatic founder effects in Amerindian mitochondrial DNAs. , 1985, American journal of physical anthropology.

[28]  M. Hammer,et al.  Genetic Evidence on the Origins of Indian Caste Populations Material Supplemental , 2022 .

[29]  L. Cavalli-Sforza,et al.  Genetic distances between Chinese populations calculated on gene frequencies of 38 loci , 1997, Science in China Series C: Life Sciences.

[30]  M. Hammer,et al.  Y-chromosomal DNA haplogroups and their implications for the dual origins of the Koreans , 2003, Human Genetics.

[31]  S. Tishkoff,et al.  Global Patterns of Linkage Disequilibrium at the CD4 Locus and Modern Human Origins , 1996, Science.

[32]  L. Jin,et al.  A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[33]  Chris Tyler-Smith,et al.  The human Y chromosome: an evolutionary marker comes of age , 2003, Nature Reviews Genetics.

[34]  S. Pääbo,et al.  Mitochondrial genome variation and the origin of modern humans , 2000, Nature.

[35]  H. Bandelt,et al.  Genetic evidence of an early exit of Homo sapiens sapiens from Africa through eastern Africa , 1999, Nature Genetics.

[36]  Hans-Jürgen Bandelt,et al.  The emerging limbs and twigs of the East Asian mtDNA tree. , 2002, Molecular biology and evolution.

[37]  K. Tokunaga,et al.  Three major lineages of Asian Y chromosomes: implications for the peopling of east and southeast Asia , 2001, Human Genetics.

[38]  P. Underhill,et al.  Y-Chromosome evidence for a northward migration of modern humans into Eastern Asia during the last Ice Age. , 1999, American journal of human genetics.

[39]  M. Hammer,et al.  Y chromosomal DNA variation and the peopling of Japan. , 1995, American journal of human genetics.

[40]  S. Oppenheimer The 'Express Train from Taiwan to Polynesia': On the congruence of proxy lines of evidence , 2004 .

[41]  D. F. Roberts,et al.  The History and Geography of Human Genes , 1996 .

[42]  P. Underhill,et al.  African Origin of Modern Humans in East Asia: A Tale of 12,000 Y Chromosomes , 2001, Science.

[43]  Li Jin,et al.  Y chromosome sequence variation and the history of human populations , 2000, Nature Genetics.

[44]  A Sajantila,et al.  Characteristics and frequency of germline mutations at microsatellite loci from the human Y chromosome, as revealed by direct observation in father/son pairs. , 2000, American journal of human genetics.

[45]  Suling Zhu,et al.  The genetic legacy of the Mongols. , 2003, American journal of human genetics.

[46]  R. W. Davis,et al.  Detection of numerous Y chromosome biallelic polymorphisms by denaturing high-performance liquid chromatography. , 1997, Genome research.

[47]  R. Moyzis,et al.  Population structure and history in East Asia. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[48]  Li Jin,et al.  Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122. , 2005, American journal of human genetics.

[49]  L. Cavalli-Sforza,et al.  Principal component analysis of gene frequencies of Chinese populations , 2000 .

[50]  C. G. Turner Late Pleistocene and Holocene population history of East Asia based on dental variation. , 1987, American journal of physical anthropology.

[51]  Yungang He,et al.  Genetic evidence supports demic diffusion of Han culture , 2004, Nature.

[52]  L. Cavalli-Sforza,et al.  The Chinese human genome diversity project. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[53]  Hidetoshi Shimodaira,et al.  Mitochondrial genome variation in eastern Asia and the peopling of Japan. , 2004, Genome research.

[54]  W. Li,et al.  Gene admixture in the silk road region of China: evidence from mtDNA and melanocortin 1 receptor polymorphism. , 2000, Genes & genetic systems.

[55]  D. Turnbull,et al.  Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA , 1999, Nature Genetics.

[56]  M. Dixon,et al.  Deep common ancestry of Indian and western-Eurasian mitochondrial DNA lineages , 1999, Current Biology.

[57]  M. Nei,et al.  Evolutionary relationships of human populations on a global scale. , 1993, Molecular biology and evolution.

[58]  Q. Kong,et al.  Reconstructing the evolutionary history of China: a caveat about inferences drawn from ancient DNA. , 2003, Molecular biology and evolution.

[59]  R. Chakraborty,et al.  Analyses of genetic structure of Tibeto-Burman populations reveals sex-biased admixture in southern Tibeto-Burmans. , 2004, American journal of human genetics.

[60]  P. Underhill,et al.  Y chromosome haplotypes reveal prehistorical migrations to the Himalayas , 2009, Human Genetics.

[61]  P. Underhill,et al.  The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations. , 2003, American journal of human genetics.

[62]  C R Cantor,et al.  Call for a worldwide survey of human genetic diversity: a vanishing opportunity for the Human Genome Project. , 1991, Genomics.

[63]  James A. Matisoff Sino-Tibetan Linguistics: Present State and Future Prospects , 1991 .

[64]  P. Underhill,et al.  The dual origin and Siberian affinities of Native American Y chromosomes. , 2002, American journal of human genetics.

[65]  Hongyu Zhao,et al.  Global patterns of linkage disequilibrium in Homo sapiens , 2001 .

[66]  A. Wilson,et al.  The recent African genesis of humans. , 1992, Scientific American.