Speciation mapping of environmental samples using XANES imaging

Environmental context Recently developed fast fluorescence detectors have opened the way to the development of element speciation mapping, i.e. X-ray absorption near edge spectroscopy (XANES) imaging, of environmental samples. This technique is potentially very informative but is also highly data intensive. Here, we used XANES imaging to explore the distribution of Cu species in biosolid materials, destined for agricultural use, as this is of importance in relation to the bioavailability and potential toxicity of this metal. Abstract Fast X-ray detectors with large solid angles and high dynamic ranges open the door to XANES imaging, in which millions of spectra are collected to image the speciation of metals at micrometre resolution, over areas up to several square centimetres. This paper explores how such multispectral datasets can be analysed in order to provide further insights into the distribution of Cu species in fresh and stockpiled biosolids. The approach demonstrated uses Principal Components Analysis to extract the ‘significant’ spectral information from the XANES maps, followed by cluster analysis to locate regions of contrasting spectral signatures. Following this model-free analysis, pixel-by-pixel linear combination fits are used to provide a direct link between bulk and imaging XANES spectroscopy. The results indicate that both the speciation and distribution of Cu species are significantly affected by ageing. The majority of heterogeneously distributed micrometre-sized Cu sulfide particles present in fresh biosolids disappear during the oxidative stockpiling process. In aged biosolids most of the Cu is homogeneously redistributed on organic matter suggesting that Cu mobility is temporarily increased during this redistribution process. This manuscript demonstrates how large XANES imaging datasets could be analysed and used to gain a deep understanding of metal speciation in environmental samples.

[1]  B. Ravel,et al.  Analysis of Soils and Minerals Using X‐ray Absorption Spectroscopy , 2015 .

[2]  D. P. Siddons,et al.  Maia X-ray fluorescence imaging: Capturing detail in complex natural samples , 2014 .

[3]  Enzo Lombi,et al.  Hard X-ray synchrotron biogeochemistry: piecing together the increasingly detailed puzzle , 2014 .

[4]  R. Naidu,et al.  Effects of chemical amendments on the lability and speciation of metals in anaerobically digested biosolids. , 2013, Environmental science & technology.

[5]  Andreas Kappler,et al.  Linking environmental processes to the in situ functioning of microorganisms by high-resolution secondary ion mass spectrometry (NanoSIMS) and scanning transmission X-ray microscopy (STXM). , 2012, Environmental microbiology.

[6]  Enzo Lombi,et al.  Fate of zinc oxide nanoparticles during anaerobic digestion of wastewater and post-treatment processing of sewage sludge. , 2012, Environmental science & technology.

[7]  E Donner,et al.  A multi-technique investigation of copper and zinc distribution, speciation and potential bioavailability in biosolids. , 2012, Environmental pollution.

[8]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[9]  E. Lombi,et al.  The availability of copper in soils historically amended with sewage sludge, manure, and compost. , 2012, Journal of environmental quality.

[10]  Rob J. Evans,et al.  Real Time Pulse Pile‐up Recovery in a High Throughput Digital Pulse Processor , 2011 .

[11]  C. Ryan,et al.  The X-ray Fluorescence Microscopy Beamline at the Australian Synchrotron , 2011 .

[12]  Enzo Lombi,et al.  X-ray absorption and micro X-ray fluorescence spectroscopy investigation of copper and zinc speciation in biosolids. , 2011, Environmental science & technology.

[13]  A. Templeton,et al.  Microscale imaging and identification of Fe speciation and distribution during fluid-mineral reactions under highly reducing conditions. , 2011, Environmental science & technology.

[14]  Hansruedi Siegrist,et al.  Behavior of metallic silver nanoparticles in a pilot wastewater treatment plant. , 2011, Environmental science & technology.

[15]  D. Paterson,et al.  Trends in hard X-ray fluorescence mapping: environmental applications in the age of fast detectors , 2011, Analytical and bioanalytical chemistry.

[16]  Mitsuhiro Murayama,et al.  Discovery and characterization of silver sulfide nanoparticles in final sewage sludge products. , 2010, Environmental science & technology.

[17]  D. P. Siddons,et al.  The Maia Spectroscopy Detector System: Engineering for Integrated Pulse Capture, Low-Latency Scanning and Real-Time Processing , 2010 .

[18]  David Nash,et al.  Bioavailability of zinc and copper in biosolids compared to their soluble salts. , 2010, Environmental pollution.

[19]  G. De Geronimo,et al.  Letter. Reduced As components in highly oxidized environments: Evidence from full spectral XANES imaging using the Maia massively parallel detector , 2010 .

[20]  D. P. Siddons,et al.  The new Maia detector system : Methods for High Definition Trace Element Imaging of natural material , 2010 .

[21]  J. A. Ryan,et al.  Phytoavailability of cadmium in long-term biosolids-amended soils. , 2010, Journal of environmental quality.

[22]  D. P. Siddons,et al.  High-throughput X-ray fluorescence imaging using a massively parallel detector array, integrated scanning and real-time spectral deconvolution , 2009 .

[23]  Colin R. Janssen,et al.  Toxicity of Trace Metals in Soil as Affected by Soil Type and Aging After Contamination: Using Calibrated Bioavailability Models to Set Ecological Soil Standards , 2009, Environmental toxicology and chemistry.

[24]  Enzo Lombi,et al.  Synchrotron-based techniques for plant and soil science: opportunities, challenges and future perspectives , 2009, Plant and Soil.

[25]  M. Pownceby,et al.  Oxidation state of europium in scheelite: Tracking fluid–rock interaction in gold deposits , 2008 .

[26]  A. Somogyi,et al.  Microanalysis (Micro-XRF, Micro-XANES, and Micro-XRD) of a Tertiary Sediment Using Microfocused Synchrotron Radiation , 2007, Microscopy and Microanalysis.

[27]  Vincent De Andrade,et al.  Redox and speciation micromapping using dispersive X‐ray absorption spectroscopy: Application to iron in chlorite mineral of a metamorphic rock thin section , 2006 .

[28]  Matthew A. Marcus,et al.  Speciation and solubility of heavy metals in contaminated soil using X-ray microfluorescence, EXAFS spectroscopy, chemical extraction, and thermodynamic modeling , 2006 .

[29]  Rémi Tucoulou,et al.  Micro-x-ray absorption near-edge structure imaging for detecting metallic Mn in GaN , 2005 .

[30]  M Newville,et al.  ATHENA, ARTEMIS, HEPHAESTUS: data analysis for X-ray absorption spectroscopy using IFEFFIT. , 2005, Journal of synchrotron radiation.

[31]  Jörg Maser,et al.  Cluster analysis in soft X-ray spectromicroscopy : Finding the patterns in complex specimens , 2005 .

[32]  David N. Jamieson,et al.  Advances in Dynamic Analysis PIXE imaging: Correction for spatial variation of pile-up components , 2005 .

[33]  Jörg Maser,et al.  Nuclear microprobe – synchrotron synergy: Towards integrated quantitative real-time elemental imaging using PIXE and SXRF , 2005 .

[34]  John H. Hubbell,et al.  Numerical description of photoelectric absorption coefficients for fundamental parameter programs , 2003 .

[35]  J. A. Ryan,et al.  Sorption and desorption of cadmium by different fractions of biosolids-amended soils. , 2003, Journal of environmental quality.

[36]  M Lerotic,et al.  Cluster analysis of soft X-ray spectromicroscopy data. , 2003, Ultramicroscopy.

[37]  John R. Sieber,et al.  A new atomic database for X-ray spectroscopic calculations , 2002 .

[38]  J. A. Ryan,et al.  The phytoavailability of cadmium to lettuce in long-term biosolids-amended soils , 1998 .

[39]  Michel Mench,et al.  Direct Determination of Lead Speciation in Contaminated Soils by EXAFS Spectroscopy , 1996 .

[40]  Eric J. W. Visser,et al.  Abramoff MD, Magalhaes PJ, Ram SJ. 2004. Image Processing with ImageJ. Biophotonics , 2012 .

[41]  Steve McGrath,et al.  Cadmium availability to wheat grain in soils treated with sewage sludge or metal salts. , 2007, Chemosphere.

[42]  J. A. Ryan,et al.  Trace element chemistry in residual-treated soil: key concepts and metal bioavailability. , 2005, Journal of environmental quality.

[43]  Michael D. Abràmoff,et al.  Image processing with ImageJ , 2004 .

[44]  C. G. Ryan,et al.  Quantitative trace element imaging using PIXE and the nuclear microprobe , 2000, Int. J. Imaging Syst. Technol..

[45]  M. McBride Toxic metal accumulation from agricultural use of sludge: are USEPA regulations protective? , 1995 .