Genetics, genomics and breeding of grapes

Preface to the Series Preface to the Volume List of Contributors Abbreviations Grapevines and Viticulture Alain Bouquet Natural Variation in Vitis Patrice This, Jose M. Martinez Zapater, Jean Pierre Peros, and Thierry Lacombe Origins and Consequences of Somatic Variation in Grapevine Laurent Torregrosa, Lucie Fernandez, Alain Bouquet, Jean-Michel Boursiquot, Frederique Pelsy and Jose M. Martinez-Zapater Linkage Disequilibrium and Prospects for Association Mapping in Vitis Christopher L. Owens Molecular Linkage Maps: Strategies, Resources and Achievements Guido Cipriani, Gabriele Di Gaspero, Aurelie Canaguier, Julie Jusseaume, Johan Tassin, Arnaud Lemainque, Vincent Thareau, Anne-Francoise Adam-Blondon and Raffaele Testolin Basics of Grapevine Genetic Analysis Leocir J. Welter, M. Stella Grando and Eva Zyprian Molecular Breeding Reinhard Topfer, Ludger Hausmann and Rudolf Eibach Positional Cloning of Disease Resistance Genes in Grapevine Claire Anderson, Nathalie Choisne, Anne-Francoise Adam-Blondon and Ian B. Dryxiv Genetics, Genomics and Breeding of Grapes Genome Sequence Initiatives Anne-Francoise Adam-Blondon, Olivier Jaillon, Silvia Vezzulli, Andrey Zharkikh, Michela Troggio and Riccardo Velasco Vitis Functional Genomics: Open Systems for Transcriptome Analysis Richard L. Tillett and John C. Cushman Functional Genomics: Closed System Approaches for Transcriptome Analyses Charles Romieu, Christian Kappel and Serge Delrot Functional Genomics: Proteomics and Metabolomics Steven T. Lund and Grant R. Cramer Bioinformatics Tools in Grapevine Genomics Jerome Grimplet, Julie Dickerson, Anne-Francoise Adam-Blondon and Grant Cramer Future Prospects Anne-Francoise Adam-Blondon, Michel Boulay and Jose M. Martinez-Zapater Index Color Plate Section

[1]  M. Heinonen Antioxidant activity and antimicrobial effect of berry phenolics--a Finnish perspective. , 2007, Molecular nutrition & food research.

[2]  J. Cushman,et al.  Transcriptomic and metabolite analyses of Cabernet Sauvignon grape berry development , 2007, BMC Genomics.

[3]  P. Sanders,et al.  Expression of bacterial genes in plant cells. , 1983, Proceedings of the National Academy of Sciences of the United States of America.

[4]  Weihua Chang,et al.  Whole-genome genotyping with the single-base extension assay , 2005, Nature Methods.

[5]  X. M. Yang,et al.  In vitro tetraploid induction via colchicine treatment from diploid somatic embryos in grapevine (Vitis vinifera L.) , 2006, Euphytica.

[6]  D. Merdinoglu,et al.  DEVELOPMENT OF GRAPEVINE RETROTRANSPOSON-BASED MOLECULAR MARKERS (S-SAP) , 2003 .

[7]  G. Ye,et al.  Development and application of molecular marker linkage maps in woody fruit crops , 1994, Euphytica.

[8]  S. Tanksley,et al.  Regulatory change in YABBY-like transcription factor led to evolution of extreme fruit size during tomato domestication , 2008, Nature Genetics.

[9]  Cécile Fizames,et al.  A comprehensive genetic map of the human genome based on 5,264 microsatellites , 1996, Nature.

[10]  M. Palma,et al.  Phenolic characterisation of red grapes autochthonous to Andalusia , 2009 .

[11]  E. Maul,et al.  Development of SCAR markers linked to powdery mildew (Uncinula necator) resistance in grapevine (Vitis vinifera L. and Vitis sp.) , 2007, Molecular Breeding.

[12]  Genetic Characterization of Endangered Grape Cultivars of Reggio Emilia Province , 2005 .

[13]  T. Candresse,et al.  Agrobacterium-mediated genetic transformation of grapevine somatic embryos and regeneration of transgenic plants expressing the coat protein of grapevine chrome mosaic nepovirus (GCMV). , 1994 .

[14]  Gerard Krewer,et al.  Phenolic content and antioxidant capacity of muscadine grapes. , 2003, Journal of agricultural and food chemistry.

[15]  A. Patocchi,et al.  The HcrVf2 gene from a wild apple confers scab resistance to a transgenic cultivated variety. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[16]  L. Cardon,et al.  Association study designs for complex diseases , 2001, Nature Reviews Genetics.

[17]  I. Pejić,et al.  Microsatellite variability in grapevine cultivars from different European regions and evaluation of assignment testing to assess the geographic origin of cultivars , 2000, Theoretical and Applied Genetics.

[18]  U. P. Hedrick,et al.  Inheritance of certain characters of grapes , 1915 .

[19]  J. Watson,et al.  Inheritance of leaf variegation In Vitis species , 1984 .

[20]  Dustin A. Cartwright,et al.  A High Quality Draft Consensus Sequence of the Genome of a Heterozygous Grapevine Variety , 2007, PloS one.

[21]  Riccardo Velasco,et al.  A SNP transferability survey within the genus Vitis , 2008, BMC Plant Biology.

[22]  G. Ye,et al.  Marker-assisted Selection for Powdery Mildew Resistance in Grapes , 2001 .

[23]  M. Thomas,et al.  Microsatellite repeats in grapevine reveal DNA polymorphisms when analysed as sequence-tagged sites (STSs) , 1993, Theoretical and Applied Genetics.

[24]  D. Pollock,et al.  Launching microsatellites: a review of mutation processes and methods of phylogenetic interference. , 1997, The Journal of heredity.

[25]  Sigbjørn Lien,et al.  Fine mapping of a quantitative trait locus for twinning rate using combined linkage and linkage disequilibrium mapping. , 2002, Genetics.

[26]  P. This,et al.  A SINGLE PAIR OF PARENTS PROPOSED FOR A GROUP OF GRAPEVINE VARIETIES IN NORTHEASTERN FRANCE , 2000 .

[27]  Y. Wan,et al.  Relatedness of resistance to anthracnose and to white rot in Chinese wild grapes , 2008 .

[28]  M. Walker,et al.  Identifying grape rootstocks with simple sequence repeat (SSR) DNA markers , 1998 .

[29]  T. Lacombe,et al.  High throughput analysis of grape genetic diversity as a tool for germplasm collection management , 2011, Theoretical and Applied Genetics.

[30]  R. Ocete,et al.  Comparative analysis of wild and cultivated grapevine (Vitis vinifera) in the Basque Region of Spain and France , 2008 .

[31]  Alain Charcosset,et al.  BioMercator: integrating genetic maps and QTL towards discovery of candidate genes , 2004, Bioinform..

[32]  D. Merdinoglu,et al.  CHIMERISM AND GENETIC DIVERSITY WITHIN THE CULTIVAR GROUP OF PINOTS , 2003 .

[33]  L. Martinelli,et al.  Somatic embryogenesis in grapevine , 2001 .

[34]  Riccardo Velasco,et al.  Genetic Mapping in the Presence of Genotyping Errors , 2007, Genetics.

[35]  W. Wilcox,et al.  Distributions of Sensitivities to Three Sterol Demethylation Inhibitor Fungicides Among Populations of Uncinula necator Sensitive and Resistant to Triadimefon. , 1997, Phytopathology.

[36]  P. This,et al.  Establishment of a local map of AFLP markers around the powdery mildew resistance gene Run1 in grapevine and assessment of their usefulness for marker assisted selection , 2001, Theoretical and Applied Genetics.

[37]  T. Lacombe,et al.  Development of a standard set of microsatellite reference alleles for identification of grape cultivars , 2004, Theoretical and Applied Genetics.

[38]  M. Van Montagu,et al.  Chimeric genes as dominant selectable markers in plant cells , 1983, The EMBO journal.

[39]  S. Riaz,et al.  A genetic linkage map of grape, utilizing Vitis rupestris and Vitis arizonica , 2004, Theoretical and Applied Genetics.

[40]  M. Walker,et al.  Cloning and characterization of XiR1, a locus responsible for dagger nematode resistance in grape , 2010, Theoretical and Applied Genetics.

[41]  E. Rühl,et al.  BREEDING ROOTSTOCK VARIETIES WITH COMPLETE PHYLLOXERA RESISTANCE , 1998 .

[42]  Assessment of two highly polymorphic microsatellite loci in 103 accessions of vitis species , 2003 .

[43]  H. Kassemeyer,et al.  Different susceptibility of European grapevine cultivars for downy mildew , 2008 .

[44]  F. Delmotte,et al.  At Least Two Origins of Fungicide Resistance in Grapevine Downy Mildew Populations , 2007, Applied and Environmental Microbiology.

[45]  Christos D. Tsadilas,et al.  Relation of Ground-Sensor Canopy Reflectance to Biomass Production and Grape Color in Two Merlot Vineyards , 2006 .

[46]  Simon de Givry,et al.  CarthaGene : multipopulation integrated genetic and radiation hybrid mapping , 2005 .

[47]  W H Lewis,et al.  Polyploidy in angiosperms: dicotyledons. , 1979, Basic life sciences.

[48]  N. Weeden,et al.  The Relationship Between Norton and Cynthiana, Red. Wine Cultivars Derived fromVitis aestivalis , 1993, American Journal of Enology and Viticulture.

[49]  Asan,et al.  The genome of the cucumber, Cucumis sativus L. , 2009, Nature Genetics.

[50]  S. Imazio,et al.  Chloroplast Microsatellites to Investigate the Origin of Grapevine , 2006, Genetic Resources and Crop Evolution.

[51]  M. Heuertz,et al.  Characterization of Grapevine Accessions from Ukraine Using Microsatellite Markers , 2008, American Journal of Enology and Viticulture.

[52]  F. Cattonaro,et al.  Application of genomics to grapevine improvement , 2010 .

[53]  A. Stout Seedlessness in Grapes , 1936 .

[54]  Michel A Haring,et al.  The intragenic approach as a new extension to traditional plant breeding. , 2007, Trends in plant science.

[55]  J. Palmer,et al.  Chloroplast DNA systematics: a review of methods and data analysis , 1994 .

[56]  Alain Bouquet,et al.  Biology of the Grapevine , 1992 .

[57]  R. Testolin,et al.  Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates , 2007, Theoretical and Applied Genetics.

[58]  E. Zyprian Plant Breeding: Genetic Mapping in Woody Crops , 1999 .

[59]  J. E. Dias,et al.  Discrimination of Portuguese grapevines based on microsatellite markers. , 2006, Journal of biotechnology.

[60]  Hirohiko Hirochika,et al.  Retrotransposon-Induced Mutations in Grape Skin Color , 2004, Science.

[61]  W. Lamboy,et al.  Selecting in situ conservation sites for grape genetic resources in the USA , 2003, Genetic Resources and Crop Evolution.

[62]  M. Laimer,et al.  Molecular characterization of grapevine plants transformed with GFLV resistance genes: I , 2005, Plant Cell Reports.

[63]  P. Chatelet,et al.  Involvement of ethylene signalling in a non-climacteric fruit: new elements regarding the regulation of ADH expression in grapevine. , 2004, Journal of experimental botany.

[64]  S. Imazio,et al.  Phylogeographical structure and conservation genetics of wild grapevine , 2006, Conservation Genetics.

[65]  F. Mannini Clonal selection in grapevine: interactions between genetic and sanitary strategies to improve propagation material. , 2000 .

[66]  E. Peterlunger,et al.  Conservation of microsatellite loci within the genus Vitis , 2000, Theoretical and Applied Genetics.

[67]  K. Gunderson,et al.  A genome-wide scalable SNP genotyping assay using microarray technology , 2005, Nature Genetics.

[68]  G. Wenzel,et al.  Variation in DNA methylation patterns of grapevine somaclones (Vitis vinifera L.) , 2008, BMC Plant Biology.

[69]  E. Scott,et al.  Reduced sensitivity of Uncinula necator to sterol demethylation inhibiting fungicides in southern Australian vineyards , 2004, Australasian Plant Pathology.

[70]  F. Regner,et al.  Reconstruction of a grapevine pedigree by microsatellite analysis , 1998, Theoretical and Applied Genetics.

[71]  M. Thomas,et al.  DNA typing of grapevines: A universal methodology and database for describing cultivars and evaluating genetic relatedness , 1994, Plant Molecular Biology.

[72]  Jianbing Yan,et al.  Natural Genetic Variation in Lycopene Epsilon Cyclase Tapped for Maize Biofortification , 2008, Science.

[73]  Clive James,et al.  Global status of commercialized biotech/GM crops: 2006. , 2006 .

[74]  José M. Martínez-Zapater,et al.  A genetic analysis of seed and berry weight in grapevine , 2006 .

[75]  P. Larkin,et al.  Somaclonal variation — a novel source of variability from cell cultures for plant improvement , 1981, Theoretical and Applied Genetics.

[76]  Andrew J. Alverson,et al.  Phylogenetic analyses of Vitis (Vitaceae) based on complete chloroplast genome sequences: effects of taxon sampling and phylogenetic methods on resolving relationships among rosids , 2006, BMC Evolutionary Biology.

[77]  R. W. Allard,et al.  Formulas and tables to facilitate the calculation of recombination values in heredity , 1956 .

[78]  T. Lacombe,et al.  Historical origins and genetic diversity of wine grapes. , 2006, Trends in genetics : TIG.

[79]  M. Crespan Evidence on the evolution of polymorphism of microsatellite markers in varieties of Vitis vinifera L. , 2004, Theoretical and Applied Genetics.

[80]  M. Thomas,et al.  A molecular genetic perspective of reproductive development in grapevine. , 2008, Journal of experimental botany.

[81]  L. Levadoux LES POPULATIONS SAUVAGES ET CULTIVÉES DE VITIS VINIFERA L. , 1956 .

[82]  K. Rajasekaran,et al.  Selection in Vitro for NaCI-tolerance in Vitis rupestris Scheele , 1985 .

[83]  J. A. Mortensen,et al.  Initiation and maintenance of long term somatic embryogenesis from anthers and ovaries of Vitis longii ‘Microsperma’ , 2004, Plant Cell, Tissue and Organ Culture.

[84]  Edward S. Buckler,et al.  Simulation Appraisal of the Adequacy of Number of Background Markers for Relationship Estimation in Association Mapping , 2009 .

[85]  G. Cipriani,et al.  Resistance gene analogs are candidate markers for disease-resistance genes in grape (Vitis spp.) , 2002, Theoretical and Applied Genetics.

[86]  M. Gore,et al.  Status and Prospects of Association Mapping in Plants , 2008 .

[87]  K. Edwards,et al.  Development of Grape Microsatellite Markers and Microsatellite Analysis Including Oriental Cultivars , 2006, American Journal of Enology and Viticulture.

[88]  R. Henry,et al.  Is the Genus Cissus (Vitaceae) Monophyletic? Evidence from Plastid and Nuclear Ribosomal DNA , 2002 .

[89]  N. Arrigo,et al.  Naturalised Vitis Rootstocks in Europe and Consequences to Native Wild Grapevine , 2005, The European Journal of Health Economics.

[90]  L. Welter,et al.  Identification, isolation and characterization of a CC-NBS-LRR candidate disease resistance gene family in grapevine , 2008, Molecular Breeding.

[91]  J. A. Jarillo,et al.  Chromatin remodeling in plant development. , 2009, The International journal of developmental biology.

[92]  Virginia Walbot,et al.  Unique features of the plant life cycle and their consequences , 2003, Nature Reviews Genetics.

[93]  A. Patocchi,et al.  Construction of a 550 kb BAC contig spanning the genomic region containing the apple scab resistance gene Vf , 1999, Molecular and General Genetics MGG.

[94]  Riccardo Velasco,et al.  SNP high-throughput screening in grapevine using the SNPlex™ genotyping system , 2008, BMC Plant Biology.

[95]  James R. Knight,et al.  Genome sequencing in microfabricated high-density picolitre reactors , 2005, Nature.

[96]  S. Sykes,et al.  A method using leafed single-node cuttings to evaluate downy mildew resistance in grapevine , 2003 .

[97]  T. Boller,et al.  Perception of the Bacterial PAMP EF-Tu by the Receptor EFR Restricts Agrobacterium-Mediated Transformation , 2006, Cell.

[98]  P. McGovern Ancient Wine: The Search for the Origins of Viniculture , 2003 .

[99]  C. Krimbas,et al.  Inheritance of polymorphic isoenzymes in grape cultivars , 1983 .

[100]  M. Morgante,et al.  Contrasting Effects of Selection on Sequence Diversity and Linkage Disequilibrium at Two Phytoene Synthase Loci Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.012526. , 2003, The Plant Cell Online.

[101]  M Koornneef,et al.  Naturally occurring variation in Arabidopsis: an underexploited resource for plant genetics. , 2000, Trends in plant science.

[102]  J. A. Mortensen Sources and inheritance of resistance to anthracnose in Vitis , 1981 .

[103]  J. Cushman,et al.  Water and salinity stress in grapevines: early and late changes in transcript and metabolite profiles , 2007, Functional & Integrative Genomics.

[104]  Michel Georges,et al.  Molecular dissection of a quantitative trait locus: a phenylalanine-to-tyrosine substitution in the transmembrane domain of the bovine growth hormone receptor is associated with a major effect on milk yield and composition. , 2002, Genetics.

[105]  W. Powell,et al.  Chloroplast microsatellites: new tools for studies in plant ecology and evolution. , 2001, Trends in ecology & evolution.

[106]  Eric S. Lander,et al.  Resolution of quantitative traits into Mendelian factors by using a complete linkage map of restriction fragment length polymorphisms , 1988, Nature.

[107]  A. Vokurka,et al.  Comparison of genetic and morphological data for inferring similarity among native Dalmatian (Croatia) grapevine cultivars (Vitis vinifera L.) , 2008 .

[108]  H H Flor,et al.  Current Status of the Gene-For-Gene Concept , 1971 .

[109]  J. Staub,et al.  The development and evaluation of consensus chloroplast primer pairs that possess highly variable sequence regions in a diverse array of plant taxa , 2003, Theoretical and Applied Genetics.

[110]  Salinari Francesca,et al.  Downy mildew (Plasmopara viticola) epidemics on grapevine under climate change , 2006 .

[111]  R. Peces,et al.  Phenolic compounds in skins and seeds of ten grape Vitis vinifera varieties grown in a warm climate , 2006 .

[112]  J. Provan Novel chloroplast microsatellites reveal cytoplasmic variation in Arabidopsis thaliana , 2000, Molecular ecology.

[113]  Keyan Zhao,et al.  An Arabidopsis Example of Association Mapping in Structured Samples , 2006, PLoS genetics.

[114]  J. Martínez-Zapater,et al.  The FT/TFL1 gene family in grapevine , 2007, Plant Molecular Biology.

[115]  F. Sanger,et al.  DNA sequencing with chain-terminating inhibitors. , 1977, Proceedings of the National Academy of Sciences of the United States of America.

[116]  E. Rühl,et al.  UTILIZING THE COMPLETE PHYLLOXERA RESISTANCE OF VITIS CINEREA ARNOLD IN ROOTSTOCK BREEDING , 2003 .

[117]  M. Caboche,et al.  High-resolution mapping and chromosome landing at the root-knot nematode resistance locus Ma from Myrobalan plum using a large-insert BAC DNA library , 2004, Theoretical and Applied Genetics.

[118]  David Mackey,et al.  Elicitors, effectors, and R genes: the new paradigm and a lifetime supply of questions. , 2007, Annual review of phytopathology.

[119]  C. Honda,et al.  Myb-related genes of the Kyoho grape (Vitis labruscana) regulate anthocyanin biosynthesis , 2002, Planta.

[120]  S. Korban,et al.  A BAC-based physical map of the apple genome. , 2007, Genomics.

[121]  Y. Gleba,et al.  Somaclonal variation and in vitro induced mutagenesis in grapevine , 1997, Plant Cell, Tissue and Organ Culture.

[122]  C. Town Annotating the genome of Medicago truncatula. , 2006, Current opinion in plant biology.

[123]  M. Gribskov,et al.  The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) , 2006, Science.

[124]  E. Stover,et al.  Ampelographic and DNA Characterization of Local Grapevine Accessions of the Tuscia Area (Latium, Italy) , 2009, American Journal of Enology and Viticulture.

[125]  J. Bennetzen,et al.  Transposable element contributions to plant gene and genome evolution , 2004, Plant Molecular Biology.

[126]  T. Lacombe,et al.  Parentage of Merlot and related winegrape cultivars of southwestern France: discovery of the missing link , 2009 .

[127]  R. Michelmore,et al.  Identification of markers linked to disease-resistance genes by bulked segregant analysis: a rapid method to detect markers in specific genomic regions by using segregating populations. , 1991, Proceedings of the National Academy of Sciences of the United States of America.

[128]  F. Regner,et al.  Identification of microsatellite sequences in Vitis riparia and their applicability for genotyping of different Vitis species. , 1999, Genome.

[129]  R. J. Henry,et al.  Analysis of SSRs derived from grape ESTs , 2000, Theoretical and Applied Genetics.

[130]  F. Lefort,et al.  Evaluation of the Genetic Contribution of Local Wild Vines to European Grapevine Cultivars , 2003, American Journal of Enology and Viticulture.

[131]  J. Veyrieras,et al.  Maize Adaptation to Temperate Climate: Relationship Between Population Structure and Polymorphism in the Dwarf8 Gene , 2006, Genetics.

[132]  Stephen M. Mount,et al.  The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus) , 2008, Nature.

[133]  J. Bennetzen,et al.  The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants , 2008, Science.

[134]  G. Di Gaspero,et al.  Transcriptional control of anthocyanin biosynthetic genes in extreme phenotypes for berry pigmentation of naturally occurring grapevines , 2007, BMC Plant Biology.

[135]  Paolo Atzeni,et al.  Cut and paste , 1997, PODS '97.

[136]  R. Henry,et al.  AFLP markers distinguishing an early mutant of Flame Seedless grape , 2004, Euphytica.

[137]  F. Cabello,et al.  Characterisation of some Spanish white grapevine cultivars by morphology and amino acid analysis , 2002 .

[138]  Alan M. Lambowitz,et al.  Mobile DNA III , 2002 .

[139]  S. Kaeppler,et al.  Epigenetic aspects of somaclonal variation in plants , 2000, Plant Molecular Biology.

[140]  J. Boursiquot,et al.  Le gouais, un cépage clé du patrimoine viticole européen , 2002 .

[141]  F. Cabello,et al.  Molecular and morphological characterization of a Vitis gene bank for the establishment of a base collection , 2004, Genetic Resources and Crop Evolution.

[142]  M. S. Grando,et al.  Genealogy of wine grape cultivars: ‘Pinot’ is related to ‘Syrah’ , 2006, Heredity.

[143]  M. Thomas,et al.  Grapevine (Vitis vinifera L.). , 2006, Methods in molecular biology.

[144]  M. McMullen,et al.  A unified mixed-model method for association mapping that accounts for multiple levels of relatedness , 2006, Nature Genetics.

[145]  S. Tanksley,et al.  EST, COSII, and arbitrary gene markers give similar estimates of nucleotide diversity in cultivated tomato (Solanum lycopersicum L.) , 2009, Theoretical and Applied Genetics.

[146]  J. Beckmann,et al.  Toward a Unified Approach to Genetic Mapping of Eukaryotes Based on Sequence Tagged Microsatellite Sites , 1990, Bio/Technology.

[147]  A. Walsh,et al.  Mining single-nucleotide polymorphisms from hexaploid wheat ESTs. , 2003, Genome.

[148]  T. Lacombe,et al.  Origin and genetic diversity of Tunisian grapes as revealed by microsatellite markers , 2009 .

[149]  M. Thomas,et al.  White grapes arose through the mutation of two similar and adjacent regulatory genes. , 2007, The Plant journal : for cell and molecular biology.

[150]  Matthew E Hurles,et al.  The functional impact of structural variation in humans. , 2008, Trends in genetics : TIG.

[151]  L. Cadle-Davidson,et al.  Ontogenic Resistance to Uncinula necator Varies by Genotype and Tissue Type in a Diverse Collection of Vitis spp. , 2008, Plant disease.

[152]  P. Goussard,et al.  In Vitro Culture and Propagation of Grapevine , 2001 .

[153]  V. Sadras,et al.  Modelling variety-dependent dynamics of soluble solids and water in berries of Vitis vinifera , 2008 .

[154]  J. Mattick,et al.  The conservation of dinucleotide microsatellites among mammalian genomes allows the use of heterologous PCR primer pairs in closely related species. , 1991, Genomics.

[155]  E. Maul,et al.  Genetic mapping and localization of quantitative trait loci affecting fungal disease resistance and leaf morphology in grapevine (Vitis vinifera L) , 2007, Molecular Breeding.

[156]  J. Roustan,et al.  Ethylene seems required for the berry development and ripening in grape, a non-climacteric fruit , 2004 .

[157]  E. Buckler,et al.  Empirical Comparison of Simple Sequence Repeats and Single Nucleotide Polymorphisms in Assessment of Maize Diversity and Relatedness , 2007, PloS one.

[158]  K. Rajasekaran,et al.  The Origin of Embryos and Plantlets from Cultured Anthers of Hybrid Grapevines , 1979, American Journal of Enology and Viticulture.

[159]  Pardis C Sabeti,et al.  Detecting recent positive selection in the human genome from haplotype structure , 2002, Nature.

[160]  V. Germain,et al.  Changes in Transcriptional Profiles Are Associated with Early Fruit Tissue Specialization in Tomato1[w] , 2005, Plant Physiology.

[161]  R. Henry,et al.  Intergeneric relationships in the Australian Vitaceae: new evidence from cpDNA analysis , 2001, Genetic Resources and Crop Evolution.

[162]  P. This,et al.  Mapping 245 SSR markers on the Vitis vinifera genome: a tool for grape genetics , 2004, Theoretical and Applied Genetics.

[163]  F. Pelsy Untranslated leader region polymorphism of Tvv1, a retrotransposon family, is a novel marker useful for analyzing genetic diversity and relatedness in the genus Vitis , 2007, Theoretical and Applied Genetics.

[164]  H. Dermen Nature of plant sports. , 1960 .

[165]  M. M. Terra,et al.  'Patrícia branca': mutação somática na videira cultivar Patrícia (IAC 871-41) , 1984 .

[166]  S. Sopory,et al.  Grape (Vitis vinifera L.) , 2005 .

[167]  V. Dumas,et al.  GENETIC ANALYSIS OF DOWNY MILDEW RESISTANCE DERIVED FROM MUSCADINIA ROTUNDIFOLIA , 2003 .

[168]  Stephen P. Ficklin,et al.  GDR (Genome Database for Rosaceae): integrated web resources for Rosaceae genomics and genetics research , 2004, BMC Bioinform..

[169]  M. Daly,et al.  A molecular marker based linkage map of Vitis. , 1995, Genome.

[170]  J. Janick,et al.  Advances in fruit breeding. , 1975 .

[171]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[172]  Detlef Weigel,et al.  Recombination and linkage disequilibrium in Arabidopsis thaliana , 2007, Nature Genetics.

[173]  W. Kress,et al.  Angiosperm phylogeny inferred from 18S rDNA, rbcL, and atpB sequences , 2000 .

[174]  J. Doebley,et al.  An Analysis of Genetic Diversity Across the Maize Genome Using Microsatellites , 2005, Genetics.

[175]  F. Silva,et al.  Caracterização química e determinação dos estádios fenológicos de variedades de videiras cultivadas no Norte Fluminense , 2008 .

[176]  J. Casacuberta,et al.  Genome-Wide Analysis of the “Cut-and-Paste” Transposons of Grapevine , 2008, PloS one.

[177]  Deborah A Nickerson,et al.  Population History and Natural Selection Shape Patterns of Genetic Variation in 132 Genes , 2004, PLoS biology.

[178]  N. Shen,et al.  Patterns of single-nucleotide polymorphisms in candidate genes for blood-pressure homeostasis , 1999, Nature Genetics.

[179]  C. Bhatia,et al.  Genome mapping, molecular markers and marker-assisted selection in crop plants , 1997, Molecular breeding.

[180]  B. Miflin,et al.  Oxford surveys of plant molecular and cell biology , 1989, Plant Growth Regulation.

[181]  Ralph Rapley,et al.  Molecular analysis and genome discovery , 2004 .

[182]  M. Hiramatsu,et al.  Variation of Glucosephosphate Isomerase and Phosphoglucomutase Isozymes in Vitis and Their use in Grape Breeding , 1994 .

[183]  D. Rizzo,et al.  Relative Resistance of Grapevine Rootstocks to Armillaria Root Disease , 2006, American Journal of Enology and Viticulture.

[184]  K. Glimelius,et al.  Application of AFLPs to characterize somaclonal variation in anther-derived grapevines , 2002 .

[185]  P. He,et al.  Discrimination of wild grapes native to China by RAPD markers , 2001 .

[186]  M. Marcotrigiano Chimeras and Variegation: Patterns of Deceit , 1997 .

[187]  E. Fridman,et al.  A recombination hotspot delimits a wild-species quantitative trait locus for tomato sugar content to 484 bp within an invertase gene. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[188]  G. Ye,et al.  A gene controlling sex in grapevines placed on a molecular marker-based genetic map. , 2000, Genome.

[189]  M. Morgante,et al.  From plant genomics to breeding practice. , 2003, Current opinion in biotechnology.

[190]  S. Aubourg,et al.  Genomic analysis of the terpenoid synthase (AtTPS) gene family of Arabidopsis thaliana , 2002, Molecular Genetics and Genomics.

[191]  Maria C Martínez,et al.  A graphic reconstruction method of an average vine leaf , 1999 .

[192]  Nicholas H. Putnam,et al.  A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation. , 2007, The Plant journal : for cell and molecular biology.

[193]  V. Segura,et al.  Transposon-induced gene activation as a mechanism generating cluster shape somatic variation in grapevine. , 2010, The Plant journal : for cell and molecular biology.

[194]  Xianming Wei,et al.  Associations between DNA markers and resistance to diseases in sugarcane and effects of population substructure , 2006, Theoretical and Applied Genetics.

[195]  Jiang Lu,et al.  Variation in Berry Protein Composition of Muscadine Cultivars , 2002, American Journal of Enology and Viticulture.

[196]  T. Lacombe,et al.  Genetic Structuring and Parentage Analysis for Evolutionary Studies in Grapevine: Kin Group and Origin of the Cultivar Sangiovese Revealed , 2007 .

[197]  J. A. Palazon,et al.  Multivariate analysis of Vitis subgenus Vitis seed morphology , 2007 .

[198]  E. Coen,et al.  Inflorescence Commitment and Architecture in Arabidopsis , 1997, Science.

[199]  J. Boursiquot,et al.  Genetic Divergence and Chimerism within Ancient Asexually Propagated Winegrape Cultivars , 2002 .

[200]  B. Girard,et al.  Yield and composition of grape seed oils extracted by supercritical carbon dioxide and petroleum ether: varietal effects. , 2005, Journal of agricultural and food chemistry.

[201]  K. Xu,et al.  Genetic and QTL analysis of resistance to Xiphinema index in a grapevine cross , 2007, Theoretical and Applied Genetics.

[202]  P. Stam,et al.  Construction of integrated genetic linkage maps by means of a new computer package: JOINMAP. , 1993 .

[203]  D. Begun,et al.  Strong selective sweep associated with a transposon insertion in Drosophila simulans. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[204]  F. Grassi,et al.  Historical isolation and Quaternary range expansion of divergent lineages in wild grapevine , 2008 .

[205]  G. Bryan,et al.  Polymorphic simple sequence repeat markers in chloroplast genomes of Solanaceous plants , 1999, Theoretical and Applied Genetics.

[206]  M. Thomas,et al.  Genetic and physical mapping of the grapevine powdery mildew resistance gene, Run1, using a bacterial artificial chromosome library , 2005, Theoretical and Applied Genetics.

[207]  Benhong Wu,et al.  Anthocyanin composition and content in grape berry skin in Vitis germplasm , 2008 .

[208]  K. Edwards,et al.  Characterization of new microsatellite loci from Vitis vinifera and their conservation in some Vitis species and hybrids , 2001 .

[209]  F. Denoeud,et al.  Annotating genomes with massive-scale RNA sequencing , 2008, Genome Biology.

[210]  K. G. M. Skene,et al.  Regeneration of virus-free grapevines using in vitro apical culture , 1982 .

[211]  D. Giannasi,et al.  Foliar flavonoids of eastern North AmericanVitis (Vitaceae) north of Mexico , 1994, Plant Systematics and Evolution.

[212]  E S Buckler,et al.  Structure of linkage disequilibrium and phenotypic associations in the maize genome , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[213]  S. Myles,et al.  Rapid Genomic Characterization of the Genus Vitis , 2010, PloS one.

[214]  H. Aoki,et al.  Juice constituents and skin pigments in Vitis coignetiae Pulliat grapevines , 2002 .

[215]  M. Morgante,et al.  Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[216]  F. Fritschi,et al.  Scanning Electron Microscopy Reveals Different Response Pattern of Four Vitis Genotypes to Xylella fastidiosa Infection. , 2008, Plant disease.

[217]  S. Tanksley,et al.  Toward a saturated linkage map in tomato based on isozymes and random cDNA sequences. , 1986, Genetics.

[218]  S. Stringer,et al.  Performance of Muscadine Grape Cultivars in Southern Mississippi , 2008 .

[219]  R. Guigó,et al.  Global trends of whole-genome duplications revealed by the ciliate Paramecium tetraurelia , 2006, Nature.

[220]  John R. Clark,et al.  Fruit Shape Analysis of Vitis Using Digital Photography , 2008 .

[221]  Maxine M. Thompson,et al.  CYTOHISTOLOGICAL STUDIES OF CYTOCHIMERIC AND TETRAPLOID GRAPES , 1963 .

[222]  I. Chen,et al.  Seed morphology of modern and fossil Ampelocissus (Vitaceae) and implications for phytogeography. , 2007, American journal of botany.

[223]  O. Loudet,et al.  Quantitative trait loci analysis of water and anion contents in interaction with nitrogen availability in Arabidopsis thaliana. , 2003, Genetics.

[224]  M. Lodhi,et al.  Nuclear DNA content of Vitis species, cultivars, and other genera of the Vitaceae , 2004, Theoretical and Applied Genetics.

[225]  Seth Debolt,et al.  L-tartaric acid synthesis from vitamin C in higher plants. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[226]  E. Stover,et al.  Use of Genetic Markers to Assess Pedigrees of Grape Cultivars and Breeding Program Selections , 2008, American Journal of Enology and Viticulture.

[227]  W. G. Hill,et al.  Linkage disequilibrium in finite populations , 1968, Theoretical and Applied Genetics.

[228]  H. Steinkellner,et al.  The use of microsatellites for germplasm management in a Portuguese grapevine collection , 1999, Theoretical and Applied Genetics.

[229]  I. Bosdet,et al.  Suppressed recombination around the MXC3 locus, a major gene for resistance to poplar leaf rust , 2001, Theoretical and Applied Genetics.

[230]  F. Cabello,et al.  Chloroplast microsatellite polymorphisms in Vitis species. , 2002, Genome.

[231]  S. Renaud,et al.  Wine, alcohol, platelets, and the French paradox for coronary heart disease , 1992, The Lancet.

[232]  W. D. Valleau Inheritance of Sex in the Grape , 1916, The American Naturalist.

[233]  Anatoly A. Gitelson,et al.  A Comparison of Two Techniques for Nondestructive Measurement of Chlorophyll Content in Grapevine Leaves , 2008 .

[234]  T. Mitchell-Olds,et al.  Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana. , 2003, Genome research.

[235]  O. Loudet,et al.  Quantitative Trait Loci Analysis of Primary Cell Wall Composition in Arabidopsis1 , 2006, Plant Physiology.

[236]  F. Lefort,et al.  Assessing the identity of grapevine plants from vineyards from Crete and Samos by microsatellite profiling , 2002 .

[237]  C. Meredith,et al.  Characterization of ten novel Ty1/copia-like retrotransposon families of the grapevine genome , 2008, BMC Genomics.

[238]  M. A. White,et al.  Climate Change and Global Wine Quality , 2005 .

[239]  R. Eibach,et al.  INHERITANCE OF AROMA COMPOUNDS , 2003 .

[240]  L. Morais-Cecílio,et al.  Genomic analysis of Grapevine Retrotransposon 1 (Gret1) in Vitis vinifera , 2005, Theoretical and Applied Genetics.

[241]  W. M. Whitten,et al.  Phylogeny of the eudicots : a nearly complete familial analysis based on rbcL gene sequences , 2000 .

[242]  I Amaya,et al.  A common mechanism controls the life cycle and architecture of plants. , 1998, Development.

[243]  D. D. Kosambi The estimation of map distances from recombination values. , 1943 .

[244]  T. Lacombe,et al.  Determining the Spanish Origin of Representative Ancient American Grapevine Varieties , 2007, American Journal of Enology and Viticulture.

[245]  James A. Cuff,et al.  Genome sequence, comparative analysis and haplotype structure of the domestic dog , 2005, Nature.

[246]  Sarah Hake,et al.  Advances in maize genomics: the emergence of positional cloning. , 2006, Current opinion in plant biology.

[247]  J. Bowers,et al.  Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L.). , 1996, Genome.

[248]  E. Pang,et al.  An introduction to markers, quantitative trait loci (QTL) mapping and marker-assisted selection for crop improvement: The basic concepts , 2005, Euphytica.

[249]  S. Robatzek,et al.  Microbe-associated molecular patterns (MAMPs) probe plant immunity. , 2007, Current opinion in plant biology.

[250]  A. R. Walker,et al.  Two new grape cultivars, bud sports of Cabernet Sauvignon bearing pale-coloured berries, are the result of deletion of two regulatory genes of the berry colour locus , 2006, Plant Molecular Biology.

[251]  Arnaud Couloux,et al.  GeneFarm, structural and functional annotation of Arabidopsis gene and protein families by a network of experts , 2004, Nucleic Acids Res..

[252]  P. Cregan,et al.  Single-nucleotide polymorphisms in soybean. , 2003, Genetics.

[253]  F. Salamini,et al.  Estimation of recombination frequencies and construction of RFLP linkage maps in plants from crosses between heterozygous parents. , 1990, Genetics.

[254]  G. McDonald,et al.  In vitro assessment of grapevine resistance to two populations of phylloxera from Australian vineyards , 2002 .

[255]  S. Imazio,et al.  Evidence of a secondary grapevine domestication centre detected by SSR analysis , 2003, Theoretical and Applied Genetics.

[256]  R. Hellens,et al.  MYB transcription factors that colour our fruit. , 2008, Trends in plant science.

[257]  L. Cadle-Davidson Monitoring Pathogenesis of Natural Botrytis cinerea Infections in Developing Grape Berries , 2008, American Journal of Enology and Viticulture.

[258]  G. Martin,et al.  Map-based cloning of a protein kinase gene conferring disease resistance in tomato. , 1993, Science.

[259]  R. Pouget Histoire de la lutte contre le phylloxera de la vigne en France , 1990 .

[260]  M. Daly,et al.  Genetic Mapping in Human Disease , 2008, Science.

[261]  M. Cervera,et al.  Molecular Characterization of Grapevine Rootstocks Maintained in Germplasm Collections , 2007, American Journal of Enology and Viticulture.

[262]  A. Rafalski,et al.  Genetic Diversity, Linkage Disequilibrium and Association Mapping , 2009 .

[263]  F. Cabello,et al.  Characterization of Spanish grapevine cultivar diversity using sequence-tagged microsatellite site markers. , 2003, Genome.

[264]  F. Balfourier,et al.  SSR allelic diversity changes in 480 European bread wheat varieties released from 1840 to 2000 , 2005, Theoretical and Applied Genetics.

[265]  T. Lacombe,et al.  Zinfandel, Dobricic, and Plavac mali: The Genetic Relationship among Three Cultivars of the Dalmatian Coast of Croatia , 2004 .

[266]  M. Thomas,et al.  The grape microvine - a model system for rapid forward and reverse genetics of grapevines. , 2010, The Plant journal : for cell and molecular biology.

[267]  D. Merdinoglu,et al.  Variation of linalool and geraniol content within two pairs of aromatic and non-aromatic grapevine clones , 2009 .

[268]  C. Kole,et al.  Transgenic temperate fruits and nuts , 2008 .

[269]  Takuji Sasaki,et al.  The map-based sequence of the rice genome , 2005, Nature.

[270]  Michele Morgante,et al.  Evolution of DNA Sequence Nonhomologies among Maize Inbredsw⃞ , 2005, The Plant Cell Online.

[271]  T. McGhie,et al.  The bioavailability and absorption of anthocyanins: towards a better understanding. , 2007, Molecular nutrition & food research.

[272]  E. Buckler,et al.  Genetic association mapping and genome organization of maize. , 2006, Current opinion in biotechnology.

[273]  J. Wen,et al.  Phylogenetic analysis of the grape family (Vitaceae) based on three chloroplast markers. , 2006, American journal of botany.

[274]  T. Helentjaris,et al.  Identification of the genomic locations of duplicate nucleotide sequences in maize by analysis of restriction fragment length polymorphisms. , 1988, Genetics.

[275]  J. Boursiquot,et al.  Computerization and statistical analysis of ampelographic data , 1987 .

[276]  P. Wincker,et al.  Anchoring of a large set of markers onto a BAC library for the development of a draft physical map of the grapevine genome , 2006, Theoretical and Applied Genetics.

[277]  D. Hartl,et al.  Principles of population genetics , 1981 .

[278]  M. Morgante,et al.  Resistance to Plasmopara viticola in grapevine ‘Bianca’ is controlled by a major dominant gene causing localised necrosis at the infection site , 2009, Theoretical and Applied Genetics.

[279]  M. Morgante,et al.  Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize , 2005, Nature Genetics.

[280]  Fagerström,et al.  On the potential for evolutionary change in meristematic cell lineages through intraorganismal selection , 1999 .

[281]  D. Merdinoglu,et al.  Four specific isogenes of the anthocyanin metabolic pathway are systematically co-expressed with the red colour of grape berries , 2006 .

[282]  C. Dean,et al.  The Timing of Developmental Transitions in Plants , 2006, Cell.

[283]  Gerben van Ooijen,et al.  Structure and function of resistance proteins in solanaceous plants. , 2007, Annual review of phytopathology.

[284]  A. Rafalski Applications of single nucleotide polymorphisms in crop genetics. , 2002, Current opinion in plant biology.

[285]  M. S. Grando,et al.  A grapevine (Vitis vinifera L.) genetic map integrating the position of 139 expressed genes , 2008, Theoretical and Applied Genetics.

[286]  M. Daly,et al.  MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. , 1987, Genomics.

[287]  Lukas A. Mueller,et al.  A Community-Based Annotation Framework for Linking Solanaceae Genomes with Phenomes1[C][OA] , 2008, Plant Physiology.

[288]  T. Lacombe,et al.  Linkage disequilibrium in cultivated grapevine, Vitis vinifera L , 2006, Theoretical and Applied Genetics.

[289]  Carolyn F. Ross,et al.  Variability of Tannin Concentration in Red Wines , 2008, American Journal of Enology and Viticulture.

[290]  L. Mao,et al.  The Mla (powdery mildew) resistance cluster is associated with three NBS-LRR gene families and suppressed recombination within a 240-kb DNA interval on chromosome 5S (1HS) of barley. , 1999, Genetics.

[291]  B. Mangin,et al.  Connected populations for detecting quantitative trait loci and testing for epistasis: an application in maize , 2006, Theoretical and Applied Genetics.

[292]  Junhua Peng,et al.  Microsatellite-based molecular diversity of bread wheat germplasm and association mapping of wheat resistance to the Russian wheat aphid , 2008, Genetica.

[293]  Andrew L. Waterhouse,et al.  The present and future of the international wine industry , 2002, Nature.

[294]  P. Byers,et al.  Dormancy, cold hardiness, and spring frost hazard in "Vitis amurensis" hybrids under continental climatic conditions , 2003 .

[295]  J. Shendure,et al.  Advanced sequencing technologies: methods and goals , 2004, Nature Reviews Genetics.

[296]  J. Poulain,et al.  The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla , 2007, Nature.

[297]  S. Ercişli,et al.  Genetic Diversity in Grapevine Germplasm Resources in the Coruh Valley Revealed by RAPD Markers , 2008, Biochemical Genetics.

[298]  R. Gardner,et al.  A set of conserved PCR primers for the analysis of simple sequence repeat polymorphisms in chloroplast genomes of dicotyledonous angiosperms. , 1999, Genome.

[299]  M. Iriti,et al.  Melatonin content in grape: myth or panacea? , 2006 .

[300]  J. Possingham,et al.  Progress in grapevine breeding , 1988, Theoretical and Applied Genetics.

[301]  Yuejin Wang,et al.  Comparison of resistance to powdery mildew and downy mildew in Chinese wild grapes , 2007 .

[302]  A. Ebadi,et al.  Evaluation of 22 populations achieved from controlled crossing between some seeded × seedless grapevine cultivars. , 2009 .

[303]  D. Mackill,et al.  Marker-assisted selection: an approach for precision plant breeding in the twenty-first century , 2008, Philosophical Transactions of the Royal Society B: Biological Sciences.

[304]  A. Kortekamp,et al.  Characterization of Plasmopara-resistance in grapevine using in vitro plants. , 2003, Journal of plant physiology.

[305]  A. Bonomelli,et al.  Response of Grapevine Defenses to UV—C Exposure , 2004, American Journal of Enology and Viticulture.

[306]  T. Roush,et al.  Inheritance of Gall Formation Relative to Phylloxera Resistance Levels in Hybrid Grapevines , 2007 .

[307]  F. Regner,et al.  Genetic Relationships Among Pinots and Related Cultivars , 2000, American Journal of Enology and Viticulture.

[308]  M. Chase,et al.  Systematics of Vitaceae from the viewpoint of plastid rbcL DNA sequence data , 2002 .

[309]  W. C. Olien The muscadine grape: botany, viticulture, history, and current industry , 1990 .

[310]  S. Decroocq,et al.  Development and transferability of apricot and grape EST microsatellite markers across taxa , 2003, Theoretical and Applied Genetics.

[311]  B. Birren,et al.  Cloning and stable maintenance of 300-kilobase-pair fragments of human DNA in Escherichia coli using an F-factor-based vector. , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[312]  A. Moing,et al.  Biochemical comparison of two grape varieties differing in juice acidity , 1997 .

[313]  H. Olmo The potential role of (vinifera x rotundifolia) hybrids in grape variety improvement , 1986, Experientia.

[314]  Nicholas Kalaitzandonakes,et al.  Compliance costs for regulatory approval of new biotech crops , 2007, Nature Biotechnology.

[315]  S. Bureau,et al.  The aroma of Muscat of Frontignan grapes: effect of the light environment of vine or bunch on volatiles and glycoconjugates , 2000 .

[316]  H. Johnson The Story of Wine , 1989 .

[317]  J. López-Roca,et al.  The maceration process during winemaking extraction of anthocyanins from grape skins into wine , 2005 .

[318]  J. Bowers,et al.  Development and Characterization of Additional Microsatellite DNA Markers for Grape , 1999, American Journal of Enology and Viticulture.

[319]  Laura DeFrancesco,et al.  Vintage genetic engineering , 2008, Nature Biotechnology.

[320]  J. Boursiquot,et al.  Genetic structure and differentiation in cultivated grape, Vitis vinifera L. , 2003, Genetical research.

[321]  M. Morgante,et al.  A set of microsatellite markers with long core repeat optimized for grape (Vitis spp.) genotyping , 2008, BMC Plant Biology.

[322]  S. M. Park,et al.  Aneuploid plants derived from crosses with triploid grapes through immature seed culture and subsequent embryo culture , 1999, Plant Cell, Tissue and Organ Culture.

[323]  F. Eeuwijk,et al.  Linkage Disequilibrium Mapping of Morphological, Resistance, and Other Agronomically Relevant Traits in Modern Spring Barley Cultivars , 2005, Molecular Breeding.

[324]  A. Raj,et al.  Karyotype Analysis and Meiotic Studies in Three Varieties of Grape (Vitis vinifera L.) , 1969 .

[325]  P. Terasaki,et al.  HLA and Disease Associations , 1985, Springer New York.

[326]  Conceição Santos,et al.  Physiological response of grapevine cultivars and a rootstock to infection with Phaeoacremonium and Phaeomoniella isolates: an in vitro approach using plants and calluses , 2005 .

[327]  Brandon S. Gaut,et al.  Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.) , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[328]  Brad A. Chapman,et al.  Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events , 2003, Nature.

[329]  M. M. Terra,et al.  Mutante somático sem sementes em videira 'Niagara Rosada' , 1988 .

[330]  J. Martínez-Zapater,et al.  Natural Genetic Variation of Arabidopsis thaliana Is Geographically Structured in the Iberian Peninsula , 2008, Genetics.

[331]  T. Lacombe,et al.  Relationships and Genetic Diversity within the Accessions Related to Malvasia Held in the Domaine de Vassal Grape Germplasm Repository , 2007, American Journal of Enology and Viticulture.

[332]  J. Carlson,et al.  Single Tree Genetic Linkage Mapping in Conifers Using Haploid DNA from Megagametophytes , 1992, Bio/Technology.

[333]  D. Falconer,et al.  Introduction to Quantitative Genetics. , 1962 .

[334]  Dr. Susumu Ohno Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.

[335]  Z. Nie,et al.  Phylogeny of Vitaceae based on the nuclear GAI1 gene sequences , 2007 .

[336]  J. Carreño,et al.  Use of sequence-tagged microsatellite site markers for characterizing table grape cultivars , 1999 .

[337]  F. Cabello,et al.  Molecular genetics of berry colour variation in table grape , 2006, Molecular Genetics and Genomics.

[338]  Carol Soderlund,et al.  Software for Restriction Fragment Physical Maps , 2005 .

[339]  M. Albrecht,et al.  Resistance proteins: molecular switches of plant defence. , 2006, Current opinion in plant biology.

[340]  Bowers,et al.  Historical Genetics: The Parentage of Chardonnay, Gamay, and Other Wine Grapes of Northeastern France. , 1999, Science.

[341]  E Bombardelli,et al.  VITIS VINIFERA L , 1995 .

[342]  J. Pritchard,et al.  Use of unlinked genetic markers to detect population stratification in association studies. , 1999, American journal of human genetics.

[343]  Y. Guédon,et al.  Quantitative analysis of the phenotypic variability of shoot architecture in two grapevine (Vitis vinifera) cultivars. , 2007, Annals of botany.

[344]  L. Martinelli,et al.  Stable insertion and expression of the movement protein gene of Grapevine Virus A (GVA) in grape (Vitis rupestris S.) , 2002 .

[345]  A. Karp On the current understanding of somaclonal variation , 1991 .

[346]  B. Keller,et al.  Genetic mapping of the Lr20-Pm1 resistance locus reveals suppressed recombination on chromosome arm 7AL in hexaploid wheat. , 2002, Genome.

[347]  J. Bowers,et al.  The Identity and Parentage of the Variety Known in California as Petite Sirah , 1999, American Journal of Enology and Viticulture.

[348]  B. Coombe,et al.  Research on Development and Ripening of the Grape Berry , 1992, American Journal of Enology and Viticulture.

[349]  M. Morgante,et al.  The powdery mildew resistance gene REN1 co-segregates with an NBS-LRR gene cluster in two Central Asian grapevines , 2009, BMC Genetics.

[350]  J. Bousquet,et al.  Molecular genetic diversity of the French-American grapevine hybrids cultivated in North America. , 2003, Genome.

[351]  J. Martínez-Zapater,et al.  Genetic relationship among cultivated and wild grapevine accessions from Tunisia. , 2004, Genome.

[352]  F. V. van Eeuwijk,et al.  A Mixed-Model Approach to Association Mapping Using Pedigree Information With an Illustration of Resistance to Phytophthora infestans in Potato , 2007, Genetics.

[353]  R. Weaver Effect of Gibberellic Acid on Fruit Set and Berry Enlargement in Seedless Grapes of Vitis vinifera , 1958, Nature.

[354]  M. McMullen,et al.  Genetic Design and Statistical Power of Nested Association Mapping in Maize , 2008, Genetics.

[355]  F. Delmotte,et al.  QoI resistance of Plasmopara viticola and Erysiphe necator in the mid-Atlantic United States. , 2007 .

[356]  Huanming Yang,et al.  A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. indica) , 2002, Science.

[357]  K. Roubelakis-Angelakis,et al.  Protoplast Technology in Grapevine , 2001 .

[358]  K. Edwards,et al.  Quantitative trait locus analysis of fungal disease resistance factors on a molecular map of grapevine , 2004, Theoretical and Applied Genetics.

[359]  A. Bogdanove,et al.  Understanding the functions of plant disease resistance proteins. , 2003, Annual review of plant biology.

[360]  Agnes Fay Morgan,et al.  The Vitamin Content of Sultanina (Thompson Seedless) Grapes and Raisins , 1935 .

[361]  H. Dermen COLCHIPLOIDY IN GRAPES , 1954 .

[362]  L. Bailey The Species of Grapes Peculiar to North America , 2013 .

[363]  E. Buckler,et al.  Structure of linkage disequilibrium in plants. , 2003, Annual review of plant biology.

[364]  G. Fanizza,et al.  QTL analysis for fruit yield components in table grapes (Vitis vinifera) , 2005, Theoretical and Applied Genetics.

[365]  B. Donèche,et al.  Proteome analysis of grape skins during ripening. , 2007, Journal of experimental botany.

[366]  A. Wakana,et al.  In Vitro Induction of Aneuploid Forms of Tetraploid Grapes by para-Fluorophynylalanine , 2006 .

[367]  T. Lacombe,et al.  Low level of pollen-mediated gene flow from cultivated to wild grapevine: consequences for the evolution of the endangered subspecies Vitis vinifera L. subsp. silvestris. , 2009, The Journal of heredity.

[368]  Maria Hopf,et al.  Domestication of plants in the old world , 1988 .

[369]  J. Juárez,et al.  Production of Viroid-Free Grapevines by Shoot Tip Culture , 1988, American Journal of Enology and Viticulture.

[370]  S. Riaz,et al.  Fine-scale genetic mapping of two Pierce’s disease resistance loci and a major segregation distortion region on chromosome 14 of grape , 2008, Theoretical and Applied Genetics.

[371]  M. R. Thomas,et al.  Chimerism in grapevines: implications for cultivar identity, ancestry and genetic improvement , 2002, Theoretical and Applied Genetics.

[372]  Montgomery Slatkin,et al.  Linkage disequilibrium — understanding the evolutionary past and mapping the medical future , 2008, Nature Reviews Genetics.

[373]  S. Imazio,et al.  Study of genetic relationships between wild and domesticated grapevine distributed from Middle East Regions to European countries , 2008 .

[374]  M. S. Grando,et al.  The 1-deoxy-d-xylulose 5-phosphate synthase gene co-localizes with a major QTL affecting monoterpene content in grapevine , 2009, Theoretical and Applied Genetics.

[375]  R. Sederoff,et al.  Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. , 1994, Genetics.

[376]  E. Kiss,et al.  Resistance to Erysiphe necator in the grapevine ‘Kishmish vatkana’ is controlled by a single locus through restriction of hyphal growth , 2008, Theoretical and Applied Genetics.

[377]  K. Edwards,et al.  A microsatellite marker based framework linkage map of Vitis vinifera L. , 2004, Theoretical and Applied Genetics.

[378]  M. Stephens,et al.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies. , 2003, Genetics.

[379]  C. Espinoza,et al.  Gene expression associated with compatible viral diseases in grapevine cultivars , 2007, Functional & Integrative Genomics.

[380]  M. Lucchin,et al.  Gene pool variation and phylogenetic relationships of an indigenous northeast Italian grapevine collection revealed by nuclear and chloroplast SSRs. , 2008, Genome.

[381]  M. Walker,et al.  Genetic linkage map of the interspecific grape rootstock cross Ramsey (Vitis champinii) × Riparia Gloire (Vitis riparia) , 2006, Theoretical and Applied Genetics.

[382]  M. S. Grando,et al.  Construction and characterization of BAC libraries from major grapevine cultivars , 2005, Theoretical and Applied Genetics.

[383]  V. Dumas,et al.  Diversification within grapevine cultivars goes through chimeric states. , 2004, Genome.

[384]  John Doebley,et al.  Maize association population: a high-resolution platform for quantitative trait locus dissection. , 2005, The Plant journal : for cell and molecular biology.

[385]  J. S. Sousa Mutações somáticas na videira Niagara , 1959 .

[386]  R. Scorza,et al.  Transformation of Grape (Vitis vinifera L.) , 1995 .

[387]  S. Tingey,et al.  Whole genome scan detects an allelic variant of fad2 associated with increased oleic acid levels in maize , 2007, Molecular Genetics and Genomics.

[388]  Nengjun Yi,et al.  The Collaborative Cross, a community resource for the genetic analysis of complex traits , 2004, Nature Genetics.

[389]  Reinhard Töpfer,et al.  A framework map from grapevine V3125 (Vitis vinifera ‘Schiava grossa’ × ‘Riesling’) × rootstock cultivar ‘Börner’ (Vitis riparia × Vitis cinerea) to localize genetic determinants of phylloxera root resistance , 2009, Theoretical and Applied Genetics.

[390]  M. Walker,et al.  A review of palaeobotanical findings of early Vitis in the mediterranean and of the origins of cultivated grape-vines, with special reference to new pointers to prehistoric exploitation in the western mediterranean , 1989 .

[391]  D. Rogers,et al.  Systematics of North American Grape Species , 1978, American Journal of Enology and Viticulture.

[392]  P. D. de Jong,et al.  BAC clones generated from sheared DNA. , 2007, Genomics.

[393]  S. Gabriel,et al.  The Structure of Haplotype Blocks in the Human Genome , 2002, Science.

[394]  J. Boursiquot,et al.  Molecular Marker Analysis of Vitis vinifera `Albariño' and some Similar Grapevine Cultivars , 1998 .

[395]  J. Doazan Evolution of grapevine variety range in France for quality wine. , 2000 .

[396]  F. Fritschi,et al.  Xylella fastidiosa Population Dynamics in Grapevine Genotypes Differing in Susceptibility to Pierce’s Disease , 2007, American Journal of Enology and Viticulture.

[397]  I. Nabulsi,et al.  Effect of low doses of gamma irradiation on in vitro growth of grapevine , 1999, Plant Cell, Tissue and Organ Culture.

[398]  M. Morgante,et al.  A physical map of the heterozygous grapevine 'Cabernet Sauvignon' allows mapping candidate genes for disease resistance , 2008, BMC Plant Biology.

[399]  K. Roeder,et al.  Genomic Control for Association Studies , 1999, Biometrics.

[400]  Richard M. Clark,et al.  Common Sequence Polymorphisms Shaping Genetic Diversity in Arabidopsis thaliana , 2007, Science.

[401]  M. Morgante,et al.  Microsatellites are preferentially associated with nonrepetitive DNA in plant genomes , 2002, Nature Genetics.

[402]  E. Green Strategies for the systematic sequencing of complex genomes , 2001, Nature Reviews Genetics.

[403]  F. Mattivi,et al.  Differences in the amount and structure of extractable skin and seed tannins amongst red grape varieties , 2009 .

[404]  A. Upadhyay,et al.  AFLP and SSR marker analysis of grape rootstocks in Indian grape germplasm , 2007 .