Systematic identification of metabolites controlling gene expression in E. coli
暂无分享,去创建一个
H. Link | R. Lill | Martin Lempp | Niklas Farke | Michelle Kuntz | S. Freibert | Roland Lill | Hannes Link
[1] M. Zampieri,et al. Metabolomics-Driven Exploration of the Chemical Drug Space to Predict Combination Antimicrobial Therapies , 2019, Molecular cell.
[2] Uwe Sauer,et al. Biological insights through omics data integration , 2019, Current Opinion in Systems Biology.
[3] Markus M. Rinschen,et al. Identification of bioactive metabolites using activity metabolomics , 2019, Nature Reviews Molecular Cell Biology.
[4] M. Zampieri,et al. Metabolic profiling of cancer cells reveals genome-wide crosstalk between transcriptional regulators and metabolism , 2019, Nature Communications.
[5] H. Link,et al. Allosteric Feedback Inhibition Enables Robust Amino Acid Biosynthesis in E. coli by Enforcing Enzyme Overabundance , 2019, Cell systems.
[6] Matthias Heinemann,et al. Assessment of the interaction between the flux‐signaling metabolite fructose‐1,6‐bisphosphate and the bacterial transcription factors CggR and Cra , 2018, Molecular microbiology.
[7] U. Sauer,et al. A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication , 2018, Cell.
[8] H. Link,et al. Crosstalk between transcription and metabolism: how much enzyme is enough for a cell? , 2018, Wiley interdisciplinary reviews. Systems biology and medicine.
[9] Emma A. Briars,et al. Genome-Scale Architecture of Small Molecule Regulatory Networks and the Fundamental Trade-Off between Regulation and Enzymatic Activity. , 2017, Cell reports.
[10] James T. Yurkovich,et al. Global transcriptional regulatory network for Escherichia coli robustly connects gene expression to transcription factor activities , 2017, Proceedings of the National Academy of Sciences.
[11] R. Phillips,et al. Tuning Transcriptional Regulation through Signaling: A Predictive Theory of Allosteric Induction , 2017, bioRxiv.
[12] Kristala L. J. Prather,et al. Dynamic regulation of metabolic flux in engineered bacteria using a pathway-independent quorum-sensing circuit , 2017, Nature Biotechnology.
[13] Shinya Kuroda,et al. Metabolism-Centric Trans-Omics. , 2017, Cell systems.
[14] H. Link,et al. Time-Optimized Isotope Ratio LC-MS/MS for High-Throughput Quantification of Primary Metabolites. , 2017, Analytical chemistry.
[15] Simon F Brunner,et al. Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli , 2017, Molecular systems biology.
[16] Peter D. Karp,et al. The EcoCyc database: reflecting new knowledge about Escherichia coli K-12 , 2016, Nucleic Acids Res..
[17] Zhixia Ye,et al. Large-scale bioprocess competitiveness: the potential of dynamic metabolic control in two-stage fermentations , 2016 .
[18] John D. Storey,et al. Systems-level analysis of mechanisms regulating yeast metabolic flux , 2016, Science.
[19] S. Busby,et al. Local and global regulation of transcription initiation in bacteria , 2016, Nature Reviews Microbiology.
[20] M. Mann,et al. L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor Activity , 2016, Cell.
[21] Markus Ralser,et al. Methionine Metabolism Alters Oxidative Stress Resistance via the Pentose Phosphate Pathway , 2016, Antioxidants & redox signaling.
[22] Fabio Rinaldi,et al. RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond , 2015, Nucleic Acids Res..
[23] Shuai Li,et al. ASD v3.0: unraveling allosteric regulation with structural mechanisms and biological networks , 2015, Nucleic Acids Res..
[24] U. Sauer,et al. Real-time metabolome profiling of the metabolic switch between starvation and growth , 2015, Nature Methods.
[25] Donghyuk Kim,et al. Genome-wide Reconstruction of OxyR and SoxRS Transcriptional Regulatory Networks under Oxidative Stress in Escherichia coli K-12 MG1655. , 2015, Cell reports.
[26] Amit Pathania,et al. Distinct Paths for Basic Amino Acid Export in Escherichia coli: YbjE (LysO) Mediates Export of l-Lysine , 2015, Journal of bacteriology.
[27] U. Sauer,et al. Coordination of microbial metabolism , 2014, Nature Reviews Microbiology.
[28] R. Milo,et al. Glycolytic strategy as a tradeoff between energy yield and protein cost , 2013, Proceedings of the National Academy of Sciences.
[29] Joerg M. Buescher,et al. Global Network Reorganization During Dynamic Adaptations of Bacillus subtilis Metabolism , 2012, Science.
[30] Adam M. Feist,et al. A comprehensive genome-scale reconstruction of Escherichia coli metabolism—2011 , 2011, Molecular systems biology.
[31] Dieter Braun,et al. Molecular interaction studies using microscale thermophoresis. , 2011, Assay and drug development technologies.
[32] Ivan G. Costa,et al. Detection and interpretation of metabolite–transcript coresponses using combined profiling data , 2011, Bioinform..
[33] B. Palsson,et al. Deciphering the transcriptional regulatory logic of amino acid metabolism. , 2011, Nature chemical biology.
[34] D. Chatterji,et al. Transcriptional switching in Escherichia coli during stress and starvation by modulation of sigma activity. , 2010, FEMS microbiology reviews.
[35] L. Reitzer,et al. Genetics and Regulation of the Major Enzymes of Alanine Synthesis in Escherichia coli , 2010, Journal of bacteriology.
[36] J. Selbig,et al. Metabolomic and transcriptomic stress response of Escherichia coli , 2010, Molecular systems biology.
[37] Olga G. Troyanskaya,et al. Coordinated Concentration Changes of Transcripts and Metabolites in Saccharomyces cerevisiae , 2009, PLoS Comput. Biol..
[38] S. Gottesman,et al. The Novel Transcription Factor SgrR Coordinates the Response to Glucose-Phosphate Stress , 2007, Journal of bacteriology.
[39] J. Pronk,et al. When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation , 2006, Molecular systems biology.
[40] H. Mori,et al. Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. , 2006, DNA research : an international journal for rapid publication of reports on genes and genomes.
[41] A. Lustig,et al. Escherichia coli dihydroxyacetone kinase controls gene expression by binding to transcription factor DhaR , 2005, The EMBO journal.
[42] Katy C. Kao,et al. Transcriptome-based determination of multiple transcription regulator activities in Escherichia coli by using network component analysis. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[43] Chiara Sabatti,et al. Network component analysis: Reconstruction of regulatory signals in biological systems , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[44] Kinetic Studies of cAMP-induced Allosteric Changes in Cyclic AMP Receptor Protein from Escherichia coli * , 2000, The Journal of Biological Chemistry.
[45] H. Buc,et al. Transcriptional regulation by cAMP and its receptor protein. , 1993, Annual review of biochemistry.
[46] R. Gunsalus,et al. Interaction of the Escherichia coli trp aporepressor with its ligand, L-tryptophan. , 1986, The Journal of biological chemistry.
[47] B. Peterkofsky,et al. N-Succinyl-L-diaminopimelic-glutamic transaminase. , 1961, The Journal of biological chemistry.