Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation

[1]  H. Woodrow,et al.  : A Review of the , 2018 .

[2]  S. Graeff,et al.  Does soil aging affect the N2O mitigation potential of biochar? A combined microcosm and field study , 2017 .

[3]  A. Kappler,et al.  Gas entrapment and microbial N2O reduction reduce N2O emissions from a biochar-amended sandy clay loam soil , 2016, Scientific Reports.

[4]  D. Huson,et al.  Soil biochar amendment shapes the composition of N2O-reducing microbial communities. , 2016, The Science of the total environment.

[5]  Daniel H. Huson,et al.  MEGAN Community Edition - Interactive Exploration and Analysis of Large-Scale Microbiome Sequencing Data , 2016, PLoS Comput. Biol..

[6]  Robert C. Edgar,et al.  Error filtering, pair assembly and error correction for next-generation sequencing reads , 2015, Bioinform..

[7]  H. Herath,et al.  The chemical composition of native organic matter influences the response of bacterial community to input of biochar and fresh plant material , 2015, Plant and Soil.

[8]  G. Pan,et al.  Consistent increase in abundance and diversity but variable change in community composition of bacteria in topsoil of rice paddy under short term biochar treatment across three sites from South China , 2015 .

[9]  Timothy L. Tickle,et al.  Compact graphical representation of phylogenetic data and metadata with GraPhlAn , 2015, PeerJ.

[10]  M. Delgado,et al.  Anoxic growth of Ensifer meliloti 1021 by N2O-reduction, a potential mitigation strategy , 2015, Front. Microbiol..

[11]  M. Horn,et al.  Denitrification Activity of a Remarkably Diverse Fen Denitrifier Community in Finnish Lapland Is N-Oxide Limited , 2015, PloS one.

[12]  L. Zwieten,et al.  The molar H: Corg ratio of biochar is a key factor in mitigating N2O emissions from soil , 2015 .

[13]  S. Hallin,et al.  Intergenomic Comparisons Highlight Modularity of the Denitrification Pathway and Underpin the Importance of Community Structure for N2O Emissions , 2014, PloS one.

[14]  Chao Xie,et al.  Fast and sensitive protein alignment using DIAMOND , 2014, Nature Methods.

[15]  David Bru,et al.  Recently identified microbial guild mediates soil N2O sink capacity , 2014 .

[16]  Yong-guan Zhu,et al.  Biochar impacts soil microbial community composition and nitrogen cycling in an acidic soil planted with rape. , 2014, Environmental science & technology.

[17]  A. Kappler,et al.  Biochar as an Electron Shuttle between Bacteria and Fe(III) Minerals , 2014 .

[18]  Miguel A. Sánchez-Monedero,et al.  Biochar's role in mitigating soil nitrous oxide emissions: a review and meta-analysis , 2014 .

[19]  D. Murphy,et al.  An incubation study investigating the mechanisms that impact N2O flux from soil following biochar application , 2014 .

[20]  T. Clough,et al.  Biochar does not affect soil N-transformations or microbial community structure under ruminant urine patches but does alter relative proportions of nitrogen cycling bacteria , 2014 .

[21]  K. Konstantinidis,et al.  Detecting Nitrous Oxide Reductase (nosZ) Genes in Soil Metagenomes: Method Development and Implications for the Nitrogen Cycle , 2014, mBio.

[22]  Renduo Zhang,et al.  Bacterial and fungal taxon changes in soil microbial community composition induced by short-term biochar amendment in red oxidized loam soil , 2014, World journal of microbiology & biotechnology.

[23]  Bruno Glaser,et al.  Biochar stability in soil: Decomposition during eight years and transformation as assessed by compound-specific 14C analysis , 2014 .

[24]  B. W. Raichle,et al.  Impact of biochar on the water holding capacity of loamy sand soil , 2013 .

[25]  S. Jien,et al.  Effects of biochar on soil properties and erosion potential in a highly weathered soil , 2013 .

[26]  I-Min A. Chen,et al.  IMG 4 version of the integrated microbial genomes comparative analysis system , 2013, Nucleic Acids Res..

[27]  T. Scholten,et al.  Linking N2O emissions from biochar-amended soil to the structure and function of the N-cycling microbial community , 2013, The ISME Journal.

[28]  E. Martínez-Romero,et al.  Polyphasic evidence supporting the reclassification of Bradyrhizobium japonicum group Ia strains as Bradyrhizobium diazoefficiens sp. nov. , 2013, International journal of systematic and evolutionary microbiology.

[29]  K. Minamisawa,et al.  Linked Expressions of nap and nos Genes in a Bradyrhizobium japonicum Mutant with Increased N2O Reductase Activity , 2013, Applied and Environmental Microbiology.

[30]  J. Novak,et al.  Addition of activated switchgrass biochar to an aridic subsoil increases microbial nitrogen cycling gene abundances , 2013 .

[31]  Mi Hyung Kim,et al.  Evaluation of food waste disposal options in terms of global warming and energy recovery: Korea , 2013, International Journal of Energy and Environmental Engineering.

[32]  S. Sohi.  Carbon Storage with Benefits , 2012, Science.

[33]  L. Philippot,et al.  The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink , 2012, The ISME Journal.

[34]  K. Konstantinidis,et al.  Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils , 2012, Proceedings of the National Academy of Sciences.

[35]  A. Zimmerman,et al.  Effect of biochar amendment on sorption and leaching of nitrate, ammonium, and phosphate in a sandy soil. , 2012, Chemosphere.

[36]  G. Giannopoulos,et al.  Biological sources and sinks of nitrous oxide and strategies to mitigate emissions , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

[37]  L. Bakken,et al.  Regulation of denitrification at the cellular level: a clue to the understanding of N2O emissions from soils , 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

[38]  C. Biasi,et al.  Contrasting denitrifier communities relate to contrasting N2O emission patterns from acidic peat soils in arctic tundra , 2011, The ISME Journal.

[39]  M. Fiers,et al.  Biochar induced soil microbial community change: Implications for biogeochemical cycling of carbon, nitrogen and phosphorus , 2011 .

[40]  Caroline A. Masiello,et al.  Biochar effects on soil biota – A review , 2011 .

[41]  S. Schuster,et al.  Integrative analysis of environmental sequences using MEGAN4. , 2011, Genome research.

[42]  T. Müller,et al.  N2O fluxes from a Haplic Luvisol under intensive production of lettuce and cauliflower as affected by different N‐fertilization strategies , 2011 .

[43]  Rob Knight,et al.  UCHIME improves sensitivity and speed of chimera detection , 2011, Bioinform..

[44]  Marcel Martin.  Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[45]  Donatella Zona,et al.  Impact of extreme precipitation and water table change on N 2 O fluxes in a bio-energy poplar plantation , 2011 .

[46]  S. Ishii,et al.  Phylogenetic and functional diversity of denitrifying bacteria isolated from various rice paddy and rice-soybean rotation fields. , 2011, Microbes and environments.

[47]  L. Philippot,et al.  Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil , 2011 .

[48]  J. Foster,et al.  Taxa-specific changes in soil microbial community composition induced by pyrogenic carbon amendments , 2011 .

[49]  Paul Munroe,et al.  An investigation into the reactions of biochar in soil , 2010 .

[50]  A. Cowie,et al.  Characterisation and evaluation of biochars for their application as a soil amendment , 2010 .

[51]  Yigal Elad,et al.  Biochar impact on development and productivity of pepper and tomato grown in fertigated soilless media , 2010, Plant and Soil.

[52]  C. Atkinson,et al.  Potential mechanisms for achieving agricultural benefits from biochar application to temperate soils: a review , 2010, Plant and Soil.

[53]  S. Udupa,et al.  Phenotypic and genetic diversity in Sinorhizobium meliloti and S. medicae from drought and salt affected regions of Morocco , 2010, BMC Microbiology.

[54]  D. Richardson,et al.  Mitigating release of the potent greenhouse gas N(2)O from the nitrogen cycle - could enzymic regulation hold the key? , 2009, Trends in biotechnology.

[55]  M. Albareda,et al.  Use of Sinorhizobium (Ensifer) fredii for soybean inoculants in South Spain. , 2009 .

[56]  C. Dambreville,et al.  Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates. , 2008, Environmental microbiology.

[57]  R. Conrad,et al.  Impact of Plant Functional Group, Plant Species, and Sampling Time on the Composition of nirK-Type Denitrifier Communities in Soil , 2007, Applied and Environmental Microbiology.

[58]  A. Goesmann,et al.  Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72 , 2006, Nature Biotechnology.

[59]  L. Philippot,et al.  Quantitative Detection of the nosZ Gene, Encoding Nitrous Oxide Reductase, and Comparison of the Abundances of 16S rRNA, narG, nirK, and nosZ Genes in Soils , 2006, Applied and Environmental Microbiology.

[60]  Sara Hallin,et al.  Reassessing PCR primers targeting nirS, nirK and nosZ genes for community surveys of denitrifying bacteria with DGGE. , 2004, FEMS microbiology ecology.

[61]  S. Latha,et al.  Role of rhizobia in the degradation of aromatic substances , 1997 .

[62]  J. Ruiz-Sainz,et al.  Evaluation of the Symbiotic Properties of Rhizobium fredii in European Soils , 1994 .

[63]  C. Drury,et al.  Kinetics of denitrification by Pseudomonas fluorescens: Oxygen effects , 1994 .

[64]  K. Wilson,et al.  Amplification of bacterial 16S ribosomal DNA with polymerase chain reaction , 1990, Journal of clinical microbiology.

[65]  S. Behrens,et al.  Elucidating the Impacts of Biochar Applications on Nitrogen Cycling Microbial Communities , 2016 .

[66]  O. Edenhofer,et al.  Climate change 2014 : mitigation of climate change , 2014 .

[67]  Corinne Le Quéré,et al.  Climate Change 2013: The Physical Science Basis , 2013 .

[68]  C. Matocha,et al.  The Role of Abiotic and Coupled Biotic/Abiotic Mineral Controlled Redox Processes in Nitrate Reduction , 2012 .

[69]  R. Conrad,et al.  Diversity, structure, and size of N(2)O-producing microbial communities in soils--what matters for their functioning? , 2011, Advances in applied microbiology.

[70]  Robert C. Edgar,et al.  BIOINFORMATICS APPLICATIONS NOTE , 2001 .

[71]  J. Lehmann,et al.  Biochar for Environmental Management: Science and Technology , 2009 .

[72]  P. Kroneck,et al.  Respiratory transformation of nitrous oxide (N2O) to dinitrogen by Bacteria and Archaea. , 2007, Advances in microbial physiology.

[73]  Alexander F. Auch,et al.  Access the most recent version at doi: 10.1101/gr.5969107 References Open Access , 2007 .

[74]  Masson-Delmotte,et al.  The Physical Science Basis , 2007 .

[75]  William E. Newton,et al.  Biology of the nitrogen cycle , 2007 .

[76]  Sara Hallin,et al.  Ecology of Denitrifying Prokaryotes in Agricultural Soil , 2007 .

[77]  S. Casella,et al.  Denitrification in Rhizobia-Legume Symbiosis , 2007 .

[78]  H. Körner,et al.  Nitrous Oxide Reductases , 2007 .

[79]  B. Blaine.  a review and meta-analysis , 2006 .

[80]  E. Stackebrandt,et al.  Nucleic acid techniques in bacterial systematics , 1991 .