Long read sequencing reveals poxvirus evolution through rapid homogenization of gene arrays
暂无分享,去创建一个
[1] C. Suttle,et al. The kinetoplastid-infecting Bodo saltans virus (BsV), a window into the most abundant giant viruses in the sea , 2017, bioRxiv.
[2] Robert E. White,et al. Heterogeneity of the Epstein-Barr Virus (EBV) Major Internal Repeat Reveals Evolutionary Mechanisms of EBV and a Functional Defect in the Prototype EBV Strain B95-8 , 2017, Journal of Virology.
[3] Guan-Zhu Han,et al. Extent and evolution of gene duplication in DNA viruses. , 2017, Virus research.
[4] Brent S. Pedersen,et al. Nanopore sequencing and assembly of a human genome with ultra-long reads , 2017, Nature Biotechnology.
[5] Zev N. Kronenberg,et al. Emergence of a Viral RNA Polymerase Variant during Gene Copy Number Amplification Promotes Rapid Evolution of Vaccinia Virus , 2016, Journal of Virology.
[6] J. Filée. Genomic comparison of closely related Giant Viruses supports an accordion-like model of evolution , 2015, Front. Microbiol..
[7] N. Loman,et al. A complete bacterial genome assembled de novo using only nanopore sequencing data , 2015, Nature Methods.
[8] C. Ellison,et al. Non-allelic gene conversion enables rapid evolutionary change at multiple regulatory sites encoded by transposable elements , 2015, eLife.
[9] B. Moss,et al. Duplication of the A17L Locus of Vaccinia Virus Provides an Alternate Route to Rifampin Resistance , 2014, Journal of Virology.
[10] Aaron R. Quinlan,et al. Poretools: a toolkit for analyzing nanopore sequence data , 2014, bioRxiv.
[11] U. Ramakrishnan,et al. Asymmetric patterns of reassortment and concerted evolution in Cardamom bushy dwarf virus. , 2014, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[12] Ira M. Hall,et al. SAMBLASTER: fast duplicate marking and structural variant read extraction , 2014, Bioinform..
[13] Jay Shendure,et al. Adaptive Gene Amplification As an Intermediate Step in the Expansion of Virus Host Range , 2014, PLoS pathogens.
[14] David H. Evans,et al. Genome Scale Patterns of Recombination between Coinfecting Vaccinia Viruses , 2014, Journal of Virology.
[15] Heng Li. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM , 2013, 1303.3997.
[16] E. Holmes,et al. Gene duplication is infrequent in the recent evolutionary history of RNA viruses. , 2013, Molecular biology and evolution.
[17] Jay Shendure,et al. Poxviruses Deploy Genomic Accordions to Adapt Rapidly against Host Antiviral Defenses , 2012, Cell.
[18] Gabor T. Marth,et al. Haplotype-based variant detection from short-read sequencing , 2012, 1207.3907.
[19] J. Soppa. Ploidy and gene conversion in Archaea. , 2011, Biochemical Society transactions.
[20] Rebecca Toroney. Investigating Roles of Unconventional RNA Primary, Secondary, and Tertiary Motifs in Regulation of the Protein Kinase PKR , 2010 .
[21] T. Ohta. Gene Conversion and Evolution of Gene Families: An Overview , 2010, Genes.
[22] R. Sanjuán,et al. Viral Mutation Rates , 2010, Journal of Virology.
[23] B. Moss,et al. Simultaneous high-resolution analysis of vaccinia virus and host cell transcriptomes by deep RNA sequencing , 2010, Proceedings of the National Academy of Sciences.
[24] J. Filée. Lateral gene transfer, lineage-specific gene expansion and the evolution of Nucleo Cytoplasmic Large DNA viruses. , 2009, Journal of invertebrate pathology.
[25] S. Elena,et al. Extremely High Mutation Rate of a Hammerhead Viroid , 2009, Science.
[26] D. Gammon,et al. The 3′-to-5′ Exonuclease Activity of Vaccinia Virus DNA Polymerase Is Essential and Plays a Role in Promoting Virus Genetic Recombination , 2009, Journal of Virology.
[27] David C. Krakauer,et al. Complete Genome Viral Phylogenies Suggests the Concerted Evolution of Regulatory Cores and Accessory Satellites , 2008, PloS one.
[28] S. Mano,et al. The Evolutionary Rate of Duplicated Genes Under Concerted Evolution , 2008, Genetics.
[29] D. Cooper,et al. Gene conversion: mechanisms, evolution and human disease , 2007, Nature Reviews Genetics.
[30] T. Eickbush,et al. Finely Orchestrated Movements: Evolution of the Ribosomal RNA Genes , 2007, Genetics.
[31] H. Yeh,et al. Reassortment and Concerted Evolution in Banana Bunchy Top Virus Genomes , 2006, Journal of Virology.
[32] Naruya Saitou,et al. Genome-Wide Search of Gene Conversions in Duplicated Genes of Mouse and Rat , 2006 .
[33] David H. Evans,et al. Enzymatic processing of replication and recombination intermediates by the vaccinia virus DNA polymerase , 2005, Nucleic acids research.
[34] E. Holmes,et al. The evolution of large DNA viruses: combining genomic information of viruses and their hosts. , 2004, Trends in microbiology.
[35] A. Hughes. Birth-and-death evolution of protein-coding regions and concerted evolution of non-coding regions in the multi-component genomes of nanoviruses. , 2004, Molecular phylogenetics and evolution.
[36] D. Rock,et al. The Genome of Canarypox Virus , 2004, Journal of Virology.
[37] Brandon S. Gaut,et al. Extensive gene gain associated with adaptive evolution of poxviruses , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[38] Steve Rozen,et al. Abundant gene conversion between arms of palindromes in human and ape Y chromosomes , 2003, Nature.
[39] Guy Drouin,et al. Characterization of the Gene Conversions Between the Multigene Family Members of the Yeast Genome , 2002, Journal of Molecular Evolution.
[40] J. Haber,et al. Lucky breaks: analysis of recombination in Saccharomyces. , 2000, Mutation research.
[41] D. Rock,et al. The Genome of Fowlpox Virus , 2000, Journal of Virology.
[42] Lukas Wagner,et al. A Greedy Algorithm for Aligning DNA Sequences , 2000, J. Comput. Biol..
[43] D H Evans,et al. Vaccinia virus DNA polymerase promotes DNA pairing and strand-transfer reactions. , 1999, Virology.
[44] Kenneth H. Wolfe,et al. Gene Duplication and Gene Conversion in the Caenorhabditis elegans Genome , 1999, Journal of Molecular Evolution.
[45] J. Silverman,et al. Regulation of the protein kinase PKR by the vaccinia virus pseudosubstrate inhibitor K3L is dependent on residues conserved between the K3L protein and the PKR substrate eIF2alpha , 1997, Molecular and cellular biology.
[46] Norman Arnheim,et al. New HLA–DPB1 alleles generated by interallelic gene conversion detected by analysis of sperm , 1995, Nature Genetics.
[47] M. Perkus,et al. Reversal of the interferon-sensitive phenotype of a vaccinia virus lacking E3L by expression of the reovirus S4 gene , 1995, Journal of virology.
[48] H. W. Chang,et al. The E3L gene of vaccinia virus encodes an inhibitor of the interferon-induced, double-stranded RNA-dependent protein kinase. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[49] O. Elroy-Stein,et al. The vaccinia virus K3L gene product potentiates translation by inhibiting double-stranded-RNA-activated protein kinase and phosphorylation of the alpha subunit of eukaryotic initiation factor 2 , 1992, Journal of virology.
[50] E. Paoletti,et al. Extrachromosomal recombination in vaccinia-infected cells requires a functional DNA polymerase participating at a level other than DNA replication. , 1990, Virus research.
[51] S. Goebel,et al. The complete DNA sequence of vaccinia virus. , 1990, Virology.
[52] C. Mathews,et al. Amplification of the ribonucleotide reductase small subunit gene: analysis of novel joints and the mechanism of gene duplication in vaccinia virus. , 1989, Nucleic acids research.
[53] M. Merchlinsky,et al. Intramolecular homologous recombination in cells infected with temperature-sensitive mutants of vaccinia virus , 1989, Journal of virology.
[54] D. Panicali,et al. Delineation of the viral products of recombination in vaccinia virus-infected cells , 1988, Journal of virology.
[55] G. McFadden,et al. High levels of genetic recombination among cotransfected plasmid DNAs in poxvirus-infected mammalian cells , 1988, Journal of virology.
[56] L. A. Ball,et al. High-frequency homologous recombination in vaccinia virus DNA , 1987, Journal of virology.
[57] J. Crow,et al. Just and Unjust: E. E. Just (1883–1941) , 1987, Genetics.
[58] R. Condit,et al. The preparation of orthopoxvirus DNA. , 1981, Journal of virological methods.
[59] P. C. Wensink,et al. A comparison of the ribosomal DNA's of Xenopus laevis and Xenopus mulleri: the evolution of tandem genes. , 1972, Journal of molecular biology.
[60] Dr. Susumu Ohno. Evolution by Gene Duplication , 1970, Springer Berlin Heidelberg.
[61] H. Drexler,et al. Identification and verification of rodent cell lines by polymerase chain reaction , 2007, Cytotechnology.
[62] David Romero,et al. Gene conversion and concerted evolution in bacterial genomes. , 2005, FEMS microbiology reviews.
[63] D. Liao,et al. Concerted evolution: molecular mechanism and biological implications. , 1999, American journal of human genetics.
[64] T. Petes,et al. Recombination between repeated genes in microorganisms. , 1988, Annual review of genetics.