Characterization of Microbial Co-infections in the Respiratory Tract of hospitalized COVID-19 patients
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Junhua Li | Huanming Yang | Jian Wang | K. Kristiansen | Huanzi Zhong | H. Tun | Weijun Chen | Xun Xu | Jincun Zhao | Jingxian Zhao | Shida Zhu | Daxi Wang | Yanqun Wang | Feng Ye | Airu Zhu | Zhaoyong Zhang | Lu Zhang | Mian Gan | Fang Li | Fangming Yang | Jiandong Li | Nanshan Zhong | Yiming Li | Wei-qun He | Huahui Ren | Tianzhu Liang | Zhun Shi | Fei Xiao | Peidi Ren | Bei Zhong | Fuqiang Li | Jiahui Zhu | Shicong Ruan | Peidi Ren
[1] Jincun Zhao,et al. Infectious SARS-CoV-2 in Feces of Patient with Severe COVID-19 , 2020, Emerging infectious diseases.
[2] Hans Clevers,et al. SARS-CoV-2 productively infects human gut enterocytes , 2020, Science.
[3] Yoshihiro Kawaoka,et al. Co-infection with SARS-CoV-2 and influenza A virus , 2020, IDCases.
[4] T. Liang,et al. Viral load dynamics and disease severity in patients infected with SARS-CoV-2 in Zhejiang province, China, January-March 2020: retrospective cohort study , 2020, BMJ.
[5] N. Shah,et al. Rates of Co-infection Between SARS-CoV-2 and Other Respiratory Pathogens. , 2020, JAMA.
[6] Pibao Li,et al. Clinical Characteristics of COVID-19 Patients With Digestive Symptoms in Hubei, China: A Descriptive, Cross-Sectional, Multicenter Study , 2020, The American journal of gastroenterology.
[7] Sunny H Wong,et al. Covid‐19 and the digestive system , 2020, Journal of gastroenterology and hepatology.
[8] Malik Peiris,et al. Viral dynamics in mild and severe cases of COVID-19 , 2020, The Lancet Infectious Diseases.
[9] Eric H. Y. Lau,et al. Temporal dynamics in viral shedding and transmissibility of COVID-19 , 2020, Nature Medicine.
[10] Junhua Li,et al. Multiple approaches for massively parallel sequencing of HCoV-19 (SARS-CoV-2) genomes directly from clinical samples , 2020, bioRxiv.
[11] Yongjun Li,et al. Co-infection with SARS-CoV-2 and Influenza A Virus in Patient with Pneumonia, China , 2020, Emerging infectious diseases.
[12] W. Zeng,et al. Chest CT Findings in Patients With Coronavirus Disease 2019 and Its Relationship With Clinical Features , 2020, Investigative radiology.
[13] Z. Fayad,et al. Chest CT Findings in Coronavirus Disease-19 (COVID-19): Relationship to Duration of Infection , 2020, Radiology.
[14] H. Shan,et al. Evidence for Gastrointestinal Infection of SARS-CoV-2 , 2020, Gastroenterology.
[15] Jennifer Lu,et al. Improved metagenomic analysis with Kraken 2 , 2019, Genome Biology.
[16] Steven L Salzberg,et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype , 2019, Nature Biotechnology.
[17] R. Dorrington,et al. Providence virus: An animal virus that replicates in plants or a plant virus that infects and replicates in animal cells? , 2019, PloS one.
[18] Eddy J. Bautista,et al. Longitudinal multi-omics of host–microbe dynamics in prediabetes , 2019, Nature.
[19] Christoph A. Merten,et al. Antibiotics-induced monodominance of a novel gut bacterial order , 2019, Gut.
[20] Robin Patel,et al. Global spread of three multidrug-resistant lineages of Staphylococcus epidermidis , 2018, Nature Microbiology.
[21] Jia Gu,et al. fastp: an ultra-fast all-in-one FASTQ preprocessor , 2018, bioRxiv.
[22] E. Rimm,et al. Metatranscriptome of human fecal microbial communities in a cohort of adult men , 2018, Nature Microbiology.
[23] E. Uribe-Querol,et al. Control of Phagocytosis by Microbial Pathogens , 2017, Front. Immunol..
[24] S. Clarke,et al. Secondary Bacterial Infections Associated with Influenza Pandemics , 2017, Front. Microbiol..
[25] G. Huffnagle,et al. The respiratory tract microbiome and lung inflammation: a two-way street , 2016, Mucosal Immunology.
[26] Peggy Cruse,et al. Management of Adults With Hospital-acquired and Ventilator-associated Pneumonia: 2016 Clinical Practice Guidelines by the Infectious Diseases Society of America and the American Thoracic Society. , 2016, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[27] D. Falzarano,et al. SARS and MERS: recent insights into emerging coronaviruses , 2016, Nature Reviews Microbiology.
[28] Yukie Shibata,et al. Bacterial diversity in saliva and oral health-related conditions: the Hisayama Study , 2016, Scientific Reports.
[29] Duy Tin Truong,et al. MetaPhlAn2 for enhanced metagenomic taxonomic profiling , 2015, Nature Methods.
[30] D. Raoult,et al. Can Plant Viruses Cross the Kingdom Border and Be Pathogenic to Humans? , 2015, Viruses.
[31] Robert P. Friedland,et al. Humans Have Antibodies against a Plant Virus: Evidence from Tobacco Mosaic Virus , 2013, PloS one.
[32] Hélène Touzet,et al. SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data , 2012, Bioinform..
[33] Steven L Salzberg,et al. Fast gapped-read alignment with Bowtie 2 , 2012, Nature Methods.
[34] Mark A. Miller,et al. Impact of the 2009 influenza pandemic on pneumococcal pneumonia hospitalizations in the United States. , 2012, Journal of Infectious Diseases.
[35] V. Rosenthal,et al. Device-associated infection rates in 398 intensive care units in Shanghai, China: International Nosocomial Infection Control Consortium (INICC) findings. , 2011, International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases.
[36] Marco Fondi,et al. Deciphering the Role of RND Efflux Transporters in Burkholderia cenocepacia , 2011, PloS one.
[37] Peter van Baarlen,et al. Epithelial crosstalk at the microbiota–mucosal interface , 2010, Proceedings of the National Academy of Sciences.
[38] P. Dřevínek,et al. Burkholderia cenocepacia in cystic fibrosis: epidemiology and molecular mechanisms of virulence. , 2010, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[39] J. Dunning,et al. Impact of the 2009 influenza pandemic , 2010, Thorax.
[40] C. Desnues,et al. Pepper Mild Mottle Virus, a Plant Virus Associated with Specific Immune Responses, Fever, Abdominal Pains, and Pruritus in Humans , 2010, PloS one.
[41] D. Mollura,et al. Pulmonary pathologic findings of fatal 2009 pandemic influenza A/H1N1 viral infections. , 2010, Archives of pathology & laboratory medicine.
[42] M. Zheng,et al. Retrospective analysis of nosocomial infections in the intensive care unit of a tertiary hospital in China during 2003 and 2007 , 2009, BMC infectious diseases.
[43] M. Valvano,et al. Burkholderia cenocepacia requires RpoE for growth under stress conditions and delay of phagolysosomal fusion in macrophages. , 2008, Microbiology.
[44] David L. Smith,et al. Hospitalizations and Deaths Caused by Methicillin-Resistant Staphylococcus aureus, United States, 1999–2005 , 2007, Emerging infectious diseases.
[45] Tao Zhang,et al. RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses , 2005, PLoS biology.
[46] J. Elborn,et al. Clinical outcome of Burkholderia cepacia complex infection in cystic fibrosis adults. , 2004, Journal of cystic fibrosis : official journal of the European Cystic Fibrosis Society.
[47] Jesse B. Hall,et al. Risk factors for ventilator-associated pneumonia: from epidemiology to patient management. , 2004, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[48] Gerald B. Pier,et al. Lung Infections Associated with Cystic Fibrosis , 2002, Clinical Microbiology Reviews.
[49] B. Yangco,et al. CDC definitions for nosocomial infections. , 1989, American journal of infection control.
[50] J M Hughes,et al. CDC definitions for nosocomial infections, 1988. , 1988, American journal of infection control.
[51] Ira M. Hall,et al. BEDTools: a flexible suite of utilities for comparing genomic features , 2010, Bioinform..
[52] R. Leggiadro. Bacterial Coinfections in Lung Tissue Specimens from Fatal Cases of 2009 Pandemic Influenza A (H1N1) – United States, May–August 2009 , 2010 .
[53] Claude-Alain H. Roten,et al. Fast and accurate short read alignment with Burrows–Wheeler transform , 2009, Bioinform..
[54] L. Martínez-Martínez,et al. Isolation of Mycoplasma hominis in critically ill patients with pulmonary infections: clinical and microbiological analysis in an intensive care unit , 2006, Intensive Care Medicine.