GWAS reveals genomic associations with swine inflammation and necrosis syndrome

[1]  E. Knol,et al.  The genetic basis of swine inflammation and necrosis syndrome and its genetic association with post-weaning skin damage and production traits , 2023, Journal of animal science.

[2]  R. Ringseis,et al.  Inflammation and necrosis syndrome is associated with alterations in blood and metabolism in pigs , 2022, BMC Veterinary Research.

[3]  Yaning Yang,et al.  Fast and efficient correction for population stratification in multi-locus genome-wide association studies , 2021, Genetica.

[4]  G. Lühken,et al.  OVarFlow: a resource optimized GATK 4 based Open source Variant calling workFlow , 2021, BMC Bioinformatics.

[5]  G. Reiner,et al.  Swine Inflammation and Necrosis Syndrome (SINS) , 2021, Animals : an open access journal from MDPI.

[6]  R. Ringseis,et al.  Swine Inflammation and Necrosis Syndrome Is Associated with Plasma Metabolites and Liver Transcriptome in Affected Piglets , 2021, Animals : an open access journal from MDPI.

[7]  G. Reiner,et al.  Genetic Differentiation of Wild Boar Populations in a Region Endangered by African Swine Fever , 2021, The Journal of Wildlife Management.

[8]  G. Reiner,et al.  The effects of boar on susceptibility to swine inflammation and necrosis syndrome in piglets , 2021, Porcine Health Management.

[9]  G. Reiner,et al.  An in-depth diagnostic exploration of an inflammation and necrosis syndrome in a population of newborn piglets. , 2020, Animal : an international journal of animal bioscience.

[10]  Zhiwu Zhang,et al.  GAPIT Version 3: Boosting Power and Accuracy for Genomic Association and Prediction , 2020, bioRxiv.

[11]  G. Reiner,et al.  Swine inflammation and necrosis syndrome is influenced by husbandry and quality of sow in suckling piglets, weaners and fattening pigs , 2020, Porcine Health Management.

[12]  S. Ghosh,et al.  Disease-Associated SNPs in Inflammation-Related lncRNAs , 2019, Front. Immunol..

[13]  Jinrong Fu,et al.  Circular RNAs and Their Emerging Roles in Immune Regulation , 2018, Front. Immunol..

[14]  Zhiwu Zhang,et al.  BLINK: a package for the next level of genome-wide association studies with both individuals and markers in the millions , 2018, GigaScience.

[15]  T. Rebbeck,et al.  A practical approach to adjusting for population stratification in genome-wide association studies: principal components and propensity scores (PCAPS) , 2018, Statistical applications in genetics and molecular biology.

[16]  Z. Tang,et al.  LncRNAnet: a comprehensive Sus scrofa lncRNA database. , 2018, Animal genetics.

[17]  J. Flowers,et al.  Origins and geographic diversification of African rice (Oryza glaberrima) , 2018, bioRxiv.

[18]  Jacob M. Keaton,et al.  Population Stratification in Genetic Association Studies , 2017, Current protocols in human genetics.

[19]  Lu Wang,et al.  PigVar: a database of pig variations and positive selection signatures , 2017, Database J. Biol. Databases Curation.

[20]  P. Farnham,et al.  Making sense of GWAS: using epigenomics and genome engineering to understand the functional relevance of SNPs in non-coding regions of the human genome , 2015, Epigenetics & Chromatin.

[21]  M. Daly,et al.  Genetic and Epigenetic Fine-Mapping of Causal Autoimmune Disease Variants , 2014, Nature.

[22]  C. Biron,et al.  TRIM68 Negatively Regulates IFN-β Production by Degrading TRK Fused Gene, a Novel Driver of IFN-β Downstream of Anti-Viral Detection Systems , 2014, PloS one.

[23]  Stephen D. Turner,et al.  qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots , 2014, bioRxiv.

[24]  N. Warner,et al.  A Genome-Wide siRNA Screen Reveals Positive and Negative Regulators of the NOD2 and NF-κB Signaling Pathways , 2013, Science Signaling.

[25]  Christophe Ambroise,et al.  Accounting for Population Stratification in Practice: A Comparison of the Main Strategies Dedicated to Genome-Wide Association Studies , 2011, PloS one.

[26]  Suzanna Lewis,et al.  Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium , 2011, Briefings Bioinform..

[27]  J. Domínguez,et al.  Porcine monocyte subsets differ in the expression of CCR2 and in their responsiveness to CCL2 , 2010, Veterinary research.

[28]  J. Prehn,et al.  Identification of polyubiquitin binding proteins involved in NF-kappaB signaling using protein arrays. , 2009, Biochimica et biophysica acta.

[29]  F. Collins,et al.  Potential etiologic and functional implications of genome-wide association loci for human diseases and traits , 2009, Proceedings of the National Academy of Sciences.

[30]  P. S. Deshpande,et al.  Inter-α-trypsin inhibitor heavy chain 4 is a novel marker of acute ischemic stroke , 2009 .

[31]  Edward S. Buckler,et al.  TASSEL: software for association mapping of complex traits in diverse samples , 2007, Bioinform..

[32]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[33]  Yingle Liu,et al.  Reticulon 3 mediates Bcl-2 accumulation in mitochondria in response to endoplasmic reticulum stress , 2007, Apoptosis.

[34]  A. Bowie,et al.  The human adaptor SARM negatively regulates adaptor protein TRIF–dependent Toll-like receptor signaling , 2006, Nature Immunology.

[35]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[36]  S. Gabriel,et al.  Assessing the impact of population stratification on genetic association studies , 2004, Nature Genetics.

[37]  J. Nielsen,et al.  Application of acute phase protein measurements in veterinary clinical chemistry. , 2004, Veterinary research.

[38]  K. Kivirikko,et al.  Cloning of the Human Prolyl 4-Hydroxylase α Subunit Isoform α(II) and Characterization of the Type II Enzyme Tetramer , 1997, The Journal of Biological Chemistry.

[39]  M. Baggiolini,et al.  Deletion of the NH2-terminal residue converts monocyte chemotactic protein 1 from an activator of basophil mediator release to an eosinophil chemoattractant , 1996, The Journal of experimental medicine.

[40]  R. Penny,et al.  Clinical observations of necrosis of the skin of suckling piglets. , 1971, Australian veterinary journal.

[41]  Yurii S. Aulchenko,et al.  BIOINFORMATICS APPLICATIONS NOTE doi:10.1093/bioinformatics/btm108 Genetics and population analysis GenABEL: an R library for genome-wide association analysis , 2022 .