Comprehensive analysis of the chromatin landscape in Drosophila
暂无分享,去创建一个
Lovelace J. Luquette | Manolis Kellis | R. Sandstrom | J. Stamatoyannopoulos | P. Park | R. Thurman | P. Sabo | P. Kharchenko | M. Tolstorukov | M. Kuroda | J. Ernst | Ruibin Xi | A. Alekseyenko | Y. Schwartz | Aki Minoda | N. Riddle | E. Larschan | A. Gorchakov | T. Gu | D. Linder-Basso | A. Plachetka | G. Shanower | Y. L. Jung | R. Park | Eric P. Bishop | Theresa Canfield | D. MacAlpine | S. Elgin | V. Pirrotta | G. Karpen | Tingting Gu | N. C. Riddle | A. A. Alekseyenko
[1] John B. Shoven,et al. I , Edinburgh Medical and Surgical Journal.
[2] D. Hogness,et al. The units of DNA replication in Drosophila melanogaster chromosomes. , 1974, Cold Spring Harbor symposia on quantitative biology.
[3] Sarah C. R. Elgin,et al. The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence , 1979, Cell.
[4] Carl Wu. The 5′ ends of Drosophila heat shock genes in chromatin are hypersensitive to DNase I , 1980, Nature.
[5] S. Elgin. The formation and function of DNase I hypersensitive sites in the process of gene activation. , 1988, The Journal of biological chemistry.
[6] Stephen M. Mount,et al. The genome sequence of Drosophila melanogaster. , 2000, Science.
[7] J. C. Clemens,et al. Use of double-stranded RNA interference in Drosophila cell lines to dissect signal transduction pathways. , 2000, Proceedings of the National Academy of Sciences of the United States of America.
[8] Christian Beisel,et al. Histone methylation by the Drosophila epigenetic transcriptional regulator Ash1 , 2002, Nature.
[9] M. Groudine,et al. Controlling the double helix , 2003, Nature.
[10] David M MacAlpine,et al. Coordination of replication and transcription along a Drosophila chromosome. , 2004, Genes & development.
[11] N. Friedman,et al. Single-Nucleosome Mapping of Histone Modifications in S. cerevisiae , 2005, PLoS biology.
[12] Bing Li,et al. Histone H3 Methylation by Set2 Directs Deacetylation of Coding Regions by Rpd3S to Suppress Spurious Intragenic Transcription , 2005, Cell.
[13] Richard Bourgon,et al. Genome-wide analysis of Polycomb targets in Drosophila melanogaster , 2006, Nature Genetics.
[14] James A. Cuff,et al. A Bivalent Chromatin Structure Marks Key Developmental Genes in Embryonic Stem Cells , 2006, Cell.
[15] Melanie A. Huntley,et al. Evolution of genes and genomes on the Drosophila phylogeny , 2007, Nature.
[16] E. Frise,et al. Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin , 2007, Science.
[17] Dustin E. Schones,et al. High-Resolution Profiling of Histone Methylations in the Human Genome , 2007, Cell.
[18] Michael B. Eisen,et al. Association of cohesin and Nipped-B with transcriptionally active regions of the Drosophila melanogaster genome , 2008, Chromosoma.
[19] Nathaniel D. Heintzman,et al. Distinct and predictive chromatin signatures of transcriptional promoters and enhancers in the human genome , 2007, Nature Genetics.
[20] Bing Li,et al. The Role of Chromatin during Transcription , 2007, Cell.
[21] Bing Li,et al. MSL complex is attracted to genes marked by H3K36 trimethylation using a sequence-independent mechanism. , 2007, Molecular cell.
[22] Leighton J. Core,et al. Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters , 2008, Science.
[23] Yuri B Schwartz,et al. Polycomb complexes and epigenetic states. , 2008, Current opinion in cell biology.
[24] B. Bernstein,et al. Chromatin state maps: new technologies, new insights. , 2008, Current opinion in genetics & development.
[25] David Osumi-Sutherland,et al. FlyBase: enhancing Drosophila Gene Ontology annotations , 2008, Nucleic Acids Res..
[26] Dustin E. Schones,et al. Monovalent and unpoised status of most genes in undifferentiated cell-enriched Drosophila testis , 2010, Genome Biology.
[27] E. Furlong,et al. Combinatorial binding predicts spatio-temporal cis-regulatory activity , 2009, Nature.
[28] James B. Brown,et al. Developmental roles of 21 Drosophila transcription factors are determined by quantitative differences in binding to an overlapping set of thousands of genomic regions , 2009, Genome Biology.
[29] Amos Tanay,et al. Functional Anatomy of Polycomb and Trithorax Chromatin Landscapes in Drosophila Embryos , 2009, PLoS biology.
[30] R. Sandstrom,et al. CCCTC-binding factor and the transcription factor T-bet orchestrate T helper 1 cell-specific structure and function at the interferon-gamma locus. , 2009, Immunity.
[31] S. Henikoff,et al. Genome-wide profiling of salt fractions maps physical properties of chromatin. , 2009, Genome research.
[32] M. Gerstein,et al. Unlocking the secrets of the genome , 2009, Nature.
[33] G. Reuter,et al. Cellular mechanism for targeting heterochromatin formation in Drosophila. , 2009, International review of cell and molecular biology.
[34] A. Visel,et al. ChIP-seq accurately predicts tissue-specific activity of enhancers , 2009, Nature.
[35] William Stafford Noble,et al. Global mapping of protein-DNA interactions in vivo by digital genomic footprinting , 2009, Nature Methods.
[36] Simon Anders,et al. Visualisation of genomic data with the Hilbert curve , 2009 .
[37] P. Scacheri,et al. CBP-mediated acetylation of histone H3 lysine 27 antagonizes Drosophila Polycomb silencing , 2009, Development.
[38] Nathaniel D. Heintzman,et al. Histone modifications at human enhancers reflect global cell-type-specific gene expression , 2009, Nature.
[39] Kairong Cui,et al. H3.3/H2A.Z double variant-containing nucleosomes mark ‘nucleosome-free regions’ of active promoters and other regulatory regions in the human genome , 2009, Nature Genetics.
[40] Per Stenberg,et al. Alternative Epigenetic Chromatin States of Polycomb Target Genes , 2010, PLoS genetics.
[41] S. Henikoff,et al. Genome-Wide Kinetics of Nucleosome Turnover Determined by Metabolic Labeling of Histones , 2010, Science.
[42] Gos Micklem,et al. Supporting Online Material Materials and Methods Figs. S1 to S50 Tables S1 to S18 References Identification of Functional Elements and Regulatory Circuits by Drosophila Modencode , 2022 .
[43] Manolis Kellis,et al. Discovery and characterization of chromatin states for systematic annotation of the human genome , 2010, Nature Biotechnology.
[44] Richard A Young,et al. Short RNAs are transcribed from repressed polycomb target genes and interact with polycomb repressive complex-2. , 2010, Molecular cell.
[45] David A. Orlando,et al. Mediator and Cohesin Connect Gene Expression and Chromatin Architecture , 2010, Nature.
[46] Guillaume J. Filion,et al. Systematic Protein Location Mapping Reveals Five Principal Chromatin Types in Drosophila Cells , 2010, Cell.
[47] D. Fargo,et al. Global Analysis of Short RNAs Reveals Widespread Promoter-Proximal Stalling and Arrest of Pol II in Drosophila , 2010, Science.
[48] G. Kreiman,et al. Widespread transcription at neuronal activity-regulated enhancers , 2010, Nature.
[49] Raymond K. Auerbach,et al. Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project , 2010, Science.
[50] R. Gordân,et al. Drosophila ORC localizes to open chromatin and marks sites of cohesin complex loading. , 2010, Genome research.
[51] Peter J. Park,et al. An assessment of histone-modification antibody quality , 2010, Nature Structural &Molecular Biology.
[52] Jacob D. Jaffe,et al. Plasticity in patterns of histone modifications and chromosomal proteins in Drosophila heterochromatin. , 2011, Genome research.
[53] Li Yang,et al. The transcriptional diversity of 25 Drosophila cell lines. , 2011, Genome research.
[54] B. Graveley. The developmental transcriptome of Drosophila melanogaster , 2010, Nature.
[55] Peter J. Bickel,et al. The Developmental Transcriptome of Drosophila melanogaster , 2010, Nature.