Applications of Information Theory to Analysis of Neural Data

Information theory is a practical and theoretical framework developed for the study of communication over noisy channels. Its probabilistic basis and capacity to relate statistical structure to function make it ideally suited for studying information flow in the nervous system. It has a number of useful properties: it is a general measure sensitive to any relationship, not only linear effects; it has meaningful units which in many cases allow direct comparison between different experiments; and it can be used to study how much information can be gained by observing neural responses in single trials, rather than in averages over multiple trials. A variety of information theoretic quantities are commonly used in neuroscience - (see entry "Definitions of Information-Theoretic Quantities"). In this entry we review some applications of information theory in neuroscience to study encoding of information in both single neurons and neuronal populations.

[1]  M. Diamond,et al.  The Role of Spike Timing in the Coding of Stimulus Location in Rat Somatosensory Cortex , 2001, Neuron.

[2]  Arthur Gretton,et al.  Low-Frequency Local Field Potentials and Spikes in Primary Visual Cortex Convey Independent Visual Information , 2008, The Journal of Neuroscience.

[3]  M. Häusser,et al.  Spatial Pattern Coding of Sensory Information by Climbing Fiber-Evoked Calcium Signals in Networks of Neighboring Cerebellar Purkinje Cells , 2009, The Journal of Neuroscience.

[4]  Stefano Panzeri,et al.  Modelling and analysis of local field potentials for studying the function of cortical circuits , 2013, Nature Reviews Neuroscience.

[5]  E. D. Adrian,et al.  The Basis of Sensation , 1928, The Indian Medical Gazette.

[6]  A. Kraskov,et al.  Estimating mutual information. , 2003, Physical review. E, Statistical, nonlinear, and soft matter physics.

[7]  William Bialek,et al.  Spikes: Exploring the Neural Code , 1996 .

[8]  C. Stosiek,et al.  In vivo two-photon calcium imaging of neuronal networks , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[9]  Pier Luigi Dragotti,et al.  A finite rate of innovation algorithm for fast and accurate spike detection from two-photon calcium imaging , 2013, Journal of neural engineering.

[10]  Nikos K Logothetis,et al.  A toolbox for the fast information analysis of multiple-site LFP, EEG and spike train recordings , 2009, BMC Neuroscience.

[11]  K. Fujita [Two-photon laser scanning fluorescence microscopy]. , 2007, Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme.

[12]  R. Quiroga,et al.  Extracting information from neuronal populations : information theory and decoding approaches , 2022 .

[13]  Stefano Panzeri,et al.  Optimal band separation of extracellular field potentials , 2012, Journal of Neuroscience Methods.

[14]  S T Roweis,et al.  Nonlinear dimensionality reduction by locally linear embedding. , 2000, Science.

[15]  John Q. Gan,et al.  FEATURE DIMENSIONALITY REDUCTION BY MANIFOLD LEARNING IN BRAIN-COMPUTER INTERFACE DESIGN , 2006 .

[16]  Stefano Panzeri,et al.  Open Source Tools for the Information Theoretic Analysis of Neural Data , 2009, Frontiers in neuroscience.

[17]  H. Sebastian Seung,et al.  The Manifold Ways of Perception , 2000, Science.

[18]  N. Logothetis,et al.  The Amplitude and Timing of the BOLD Signal Reflects the Relationship between Local Field Potential Power at Different Frequencies , 2012, The Journal of Neuroscience.

[19]  S. Panzeri,et al.  Role of precise spike timing in coding of dynamic vibrissa stimuli in somatosensory thalamus. , 2007, Journal of neurophysiology.

[20]  D. Kleinfeld,et al.  Anatomical and functional imaging of neurons using 2-photon laser scanning microscopy , 1994, Journal of Neuroscience Methods.

[21]  C. Koch,et al.  The origin of extracellular fields and currents — EEG, ECoG, LFP and spikes , 2012, Nature Reviews Neuroscience.

[22]  G D Lewen,et al.  Reproducibility and Variability in Neural Spike Trains , 1997, Science.

[23]  Stefan R. Pulver,et al.  Ultra-sensitive fluorescent proteins for imaging neuronal activity , 2013, Nature.