Accelerated parallel algorithm for gene network reverse engineering
暂无分享,去创建一个
Zhou Zhou | Jing He | Andrea Califano | Michael Reed | A. Califano | Jing He | Zhou Zhou | Michael Reed
[1] Fei Liu,et al. Inference of Gene Regulatory Network Based on Local Bayesian Networks , 2016, PLoS Comput. Biol..
[2] Liang Cheng,et al. BLAT2DOLite: An Online System for Identifying Significant Relationships between Genetic Sequences and Diseases , 2016, PloS one.
[3] Lin Gao,et al. Inferring Gene Regulatory Networks Using Conditional Regulation Pattern to Guide Candidate Genes , 2016, PloS one.
[4] Andrea Califano,et al. ARACNe-AP: gene network reverse engineering through adaptive partitioning inference of mutual information , 2016, Bioinform..
[5] Yong Wang,et al. A systematic method to identify modulation of transcriptional regulation via chromatin activity reveals regulatory network during mESC differentiation , 2016, Scientific Reports.
[6] J. Zacny,et al. The Role of Forkhead Box Protein M1 in Breast Cancer Progression and Resistance to Therapy , 2016, International journal of breast cancer.
[7] Steven J. M. Jones,et al. The Molecular Taxonomy of Primary Prostate Cancer , 2015, Cell.
[8] Steven J. M. Jones,et al. Comprehensive Molecular Portraits of Invasive Lobular Breast Cancer , 2015, Cell.
[9] Srinivas Aluru,et al. Parallel Mutual Information Based Construction of Genome-Scale Networks on the Intel®Xeon Phi™ Coprocessor , 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[10] Madhu Chetty,et al. Improving gene regulatory network inference using network topology information. , 2015, Molecular bioSystems.
[11] María Rodríguez Martínez,et al. Elucidating Compound Mechanism of Action by Network Perturbation Analysis Graphical , 2015 .
[12] Xingming Zhao,et al. Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks , 2014, Nucleic acids research.
[13] E. Lam,et al. FOXM1: An emerging master regulator of DNA damage response and genotoxic agent resistance , 2014, Biochimica et biophysica acta.
[14] Andrea Califano,et al. Inferring Protein Modulation from Gene Expression Data Using Conditional Mutual Information , 2014, PloS one.
[15] Mariano J. Alvarez,et al. Identification of Causal Genetic Drivers of Human Disease through Systems-Level Analysis of Regulatory Networks , 2014, Cell.
[16] Ke Chen,et al. Survey of MapReduce frame operation in bioinformatics , 2013, Briefings Bioinform..
[17] Mariano J. Alvarez,et al. Cross-species regulatory network analysis identifies a synergistic interaction between FOXM1 and CENPF that drives prostate cancer malignancy. , 2014, Cancer cell.
[18] S. Lakhani,et al. Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer , 2014, Oncogenesis.
[19] Tammara A. Wood,et al. Identification of cell cycle–regulated genes periodically expressed in U2OS cells and their regulation by FOXM1 and E2F transcription factors , 2013, Molecular biology of the cell.
[20] Seung Ah Lee,et al. Prognostic Discrimination Using a 70-Gene Signature among Patients with Estrogen Receptor-Positive Breast Cancer and an Intermediate 21-Gene Recurrence Score , 2013, International journal of molecular sciences.
[21] David Correa Martins,et al. Gene regulatory networks inference using a multi-GPU exhaustive search algorithm , 2013, BMC Bioinformatics.
[22] A. Mencalha,et al. Forkhead Box M1 (FoxM1) Gene Is a New STAT3 Transcriptional Factor Target and Is Essential for Proliferation, Survival and DNA Repair of K562 Cell Line , 2012, PloS one.
[23] Carlos A. Coello Coello,et al. A GPU-Based Implementation of Differential Evolution for Solving the Gene Regulatory Network Model Inference Problem , 2012 .
[24] A. Gartel,et al. The suppression of FOXM1 and its targets in breast cancer xenograft tumors by siRNA , 2011, Oncotarget.
[25] Björn Usadel,et al. HRE-type genes are regulated by growth-related changes in internal oxygen concentrations during the normal development of potato (Solanum tuberosum) tubers. , 2011, Plant & cell physiology.
[26] B. Usadel,et al. PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species[W][OA] , 2011, Plant Cell.
[27] Kunle Olukotun,et al. Accelerating CUDA graph algorithms at maximum warp , 2011, PPoPP '11.
[28] Wen-mei W. Hwu,et al. GPU computing gems , 2011 .
[29] Aris Floratos,et al. geWorkbench: an open source platform for integrative genomics , 2010, Bioinform..
[30] Mariano J. Alvarez,et al. A human B-cell interactome identifies MYB and FOXM1 as master regulators of proliferation in germinal centers , 2010, Molecular systems biology.
[31] Mina J. Bissell,et al. Prognostic Breast Cancer Signature Identified from 3D Culture Model Accurately Predicts Clinical Outcome across Independent Datasets , 2008, PloS one.
[32] Xiaodong Wang,et al. Gene Regulatory Network Reconstruction Using Conditional Mutual Information , 2008, EURASIP J. Bioinform. Syst. Biol..
[33] K. Ryan,et al. Tumor Antigen LRRC15 Impedes Adenoviral Infection: Implications for Virus-Based Cancer Therapy , 2008, Journal of Virology.
[34] D. di Bernardo,et al. How to infer gene networks from expression profiles , 2007, Molecular systems biology.
[35] Chris Wiggins,et al. ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context , 2004, BMC Bioinformatics.
[36] Vladimir Petrovic,et al. Forkhead Box M1 Regulates the Transcriptional Network of Genes Essential for Mitotic Progression and Genes Encoding the SCF (Skp2-Cks1) Ubiquitin Ligase , 2005, Molecular and Cellular Biology.
[37] R. Holcombe,et al. Wnt pathway component LEF1 mediates tumor cell invasion and is expressed in human and murine breast cancers lacking ErbB2 (her-2/neu) overexpression. , 2005, International journal of oncology.
[38] M. Follettie,et al. Loss of the forkhead transcription factor FoxM1 causes centrosome amplification and mitotic catastrophe. , 2005, Cancer research.
[39] R. Costa. FoxM1 dances with mitosis , 2005, Nature Cell Biology.
[40] H. Yokota,et al. High lib mRNA expression in breast carcinomas. , 2004, DNA research : an international journal for rapid publication of reports on genes and genomes.
[41] Carsten O. Daub,et al. The mutual information: Detecting and evaluating dependencies between variables , 2002, ECCB.
[42] H. Yokota,et al. A novel member of the leucine-rich repeat superfamily induced in rat astrocytes by beta-amyloid. , 2002, Biochemical and biophysical research communications.
[43] U. Francke,et al. Gene for lymphoid enhancer-binding factor 1 (LEF1) mapped to human chromosome 4 (q23-q25) and mouse chromosome 3 near Egf. , 1991, Genomics.