Comprehensive viral oligonucleotide probe design using conserved protein regions
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Sean Conlan | Yang Liu | H. Hegyi | G. Palacios | W. Lipkin | T. Briese | O. Jabado | S. Conlan | Yang Liu | P. Quan | Yves Lussier | Thomas Briese | Omar J. Jabado | Gustavo Palacios | P. Lan Quan | Hédi Hegyi | Yves Lussier | W. I. Lipkin | Yves A. Lussier
[1] R. Shafer. Rationale and uses of a public HIV drug-resistance database. , 2006, The Journal of infectious diseases.
[2] W. Ian Lipkin,et al. Greene SCPrimer: a rapid comprehensive tool for designing degenerate primers from multiple sequence alignments , 2006, Nucleic acids research.
[3] S. Altschul. Amino acid substitution matrices from an information theoretic perspective , 1991, Journal of Molecular Biology.
[4] Majid Laassri,et al. Detection and discrimination of orthopoxviruses using microarrays of immobilized oligonucleotides , 2003, Journal of virological methods.
[5] J. Derisi,et al. Pan-Viral Screening of Respiratory Tract Infections in Adults With and Without Asthma Reveals Unexpected Human Coronavirus and Human Rhinovirus Diversity , 2007, The Journal of infectious diseases.
[6] Terence P. Speed,et al. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias , 2003, Bioinform..
[7] Jorng-Tzong Horng,et al. Database to Dynamically Aid Probe Design for Virus Identification , 2006, IEEE Transactions on Information Technology in Biomedicine.
[8] Felix Naef,et al. Absolute mRNA concentrations from sequence-specific calibration of oligonucleotide arrays. , 2003, Nucleic acids research.
[9] A D Tsodikov,et al. Thermodynamic calculations and statistical correlations for oligo-probes design. , 2003, Nucleic acids research.
[10] Joseph L. DeRisi,et al. Microarray Detection of Human Parainfluenzavirus 4 Infection Associated with Respiratory Failure in an Immunocompetent Adult , 2006, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[11] P. Kilmarx,et al. Global epidemiology of HIV , 2009, Current opinion in HIV and AIDS.
[12] Christopher W. Wong,et al. Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays. , 2004, Genome research.
[13] K. Madagan,et al. Detection of potato viruses using microarray technology: towards a generic method for plant viral disease diagnosis. , 2003, Journal of virological methods.
[14] S. Sammons,et al. GeneChip Resequencing of the Smallpox Virus Genome Can Identify Novel Strains: a Biodefense Application , 2006, Journal of Clinical Microbiology.
[15] Henrik Bjørn Nielsen,et al. Improving comparability between microarray probe signals by thermodynamic intensity correction. , 2007, Nucleic acids research.
[16] R. Durbin,et al. Pfam: A comprehensive database of protein domain families based on seed alignments , 1997, Proteins.
[17] Anne Condon,et al. RNAsoft: a suite of RNA secondary structure prediction and design software tools , 2003, Nucleic Acids Res..
[18] M. O. Dayhoff,et al. Atlas of protein sequence and structure , 1965 .
[19] Jason Hinds,et al. DNA Microarrays for Virus Detection in Cases of Central Nervous System Infection , 2004, Journal of Clinical Microbiology.
[20] J. Derisi,et al. Microarray-based detection and genotyping of viral pathogens , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[21] Detlef D. Leipe,et al. National Center for Biotechnology Information Viral Genomes Project , 2004, Journal of Virology.
[22] Roland L. Dunbrack. Sequence comparison and protein structure prediction. , 2006, Current opinion in structural biology.
[23] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[24] Yang Liu,et al. Panmicrobial Oligonucleotide Array for Diagnosis of Infectious Diseases , 2007, Emerging infectious diseases.
[25] G L Andersen,et al. Sequence-specific identification of 18 pathogenic microorganisms using microarray technology. , 2002, Molecular and cellular probes.
[26] J. Derisi,et al. Identification of a Novel Gammaretrovirus in Prostate Tumors of Patients Homozygous for R462Q RNASEL Variant , 2006, PLoS pathogens.
[27] Chun-Houh Chen,et al. Design of microarray probes for virus identification and detection of emerging viruses at the genus level , 2006, BMC Bioinformatics.
[28] Sean R. Eddy,et al. Profile hidden Markov models , 1998, Bioinform..
[29] David L. Hirschberg,et al. Detection of Respiratory Viruses and Subtype Identification of Influenza A Viruses by GreeneChipResp Oligonucleotide Microarray , 2007, Journal of Clinical Microbiology.
[30] M. Zuker. Calculating nucleic acid secondary structure. , 2000, Current opinion in structural biology.
[31] James M. Eldred,et al. Viral Discovery and Sequence Recovery Using DNA Microarrays , 2003, PLoS biology.
[32] James A. Smagala,et al. Experimental Evaluation of the FluChip Diagnostic Microarray for Influenza Virus Surveillance , 2006, Journal of Clinical Microbiology.
[33] Dan Wu,et al. EMBL Nucleotide Sequence Database: developments in 2005 , 2005, Nucleic Acids Res..
[34] David A Stenger,et al. Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays. , 2006, Genome research.
[35] Thomas L. Madden,et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.
[36] Adam Godzik,et al. Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences , 2006, Bioinform..
[37] Timothy L. Bailey,et al. An artificial intelligence approach to motif discovery in protein sequences: Application to steroid dehydrogenases , 1997, The Journal of Steroid Biochemistry and Molecular Biology.
[38] G. Grinstein,et al. Modeling of DNA microarray data by using physical properties of hybridization , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[39] James A. Smagala,et al. Robust Sequence Selection Method Used To Develop the FluChip Diagnostic Microarray for Influenza Virus , 2006, Journal of Clinical Microbiology.
[40] Ash A. Alizadeh,et al. Diagnosis of a Critical Respiratory Illness Caused by Human Metapneumovirus by Use of a Pan-Virus Microarray , 2007, Journal of Clinical Microbiology.
[41] Yudong D. He,et al. Expression profiling using microarrays fabricated by an ink-jet oligonucleotide synthesizer , 2001, Nature Biotechnology.
[42] V. Chizhikov,et al. Detection and Genotyping of Human Group A Rotaviruses by Oligonucleotide Microarray Hybridization , 2002, Journal of Clinical Microbiology.
[43] Robert D. Finn,et al. Pfam: clans, web tools and services , 2005, Nucleic Acids Res..
[44] J. SantaLucia,et al. A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. , 1998, Proceedings of the National Academy of Sciences of the United States of America.
[45] S. Lee,et al. Correlation of cervical carcinoma and precancerous lesions with human papillomavirus (HPV) genotypes detected with the HPV DNA chip microarray method , 2003, Cancer.