Integrating BioPAX pathway knowledge with SBML models.
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J C Schaff | O Ruebenacker | I I Moraru | M L Blinov | J. Schaff | M. Blinov | I. Moraru | O. Ruebenacker
[1] Keyuan Jiang,et al. Ontology-Based Aggregation of Biological Pathway Datasets , 2005, 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference.
[2] Hiroaki Kitano,et al. The systems biology markup language (SBML): a medium for representation and exchange of biochemical network models , 2003, Bioinform..
[3] Michael L. Blinov,et al. Kinetic Modeling Using BioPAX Ontology , 2007, 2007 IEEE International Conference on Bioinformatics and Biomedicine (BIBM 2007).
[4] Nicolas Le Novère,et al. Model storage, exchange and integration , 2006, BMC neuroscience.
[5] Hugh D. Spence,et al. Minimum information requested in the annotation of biochemical models (MIRIAM) , 2005, Nature Biotechnology.
[6] A. Gatti,et al. Multisite Autophosphorylation of p21-activated Protein Kinase γ-PAK as a Function of Activation* , 1999, The Journal of Biological Chemistry.
[7] Masao Nagasaki,et al. Cell System Ontology: Representation for Modeling, Visualizing, and Simulating Biological Pathways , 2007, Silico Biol..
[8] Mudita Singhal,et al. COPASI - a COmplex PAthway SImulator , 2006, Bioinform..
[9] P. Shannon,et al. Cytoscape: a software environment for integrated models of biomolecular interaction networks. , 2003, Genome research.
[10] M. Ashburner,et al. Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.
[11] Joanne S. Luciano,et al. PAX of mind for pathway researchers. , 2005, Drug discovery today.
[12] Matthew R. Pocock,et al. Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models , 2007, J. Integr. Bioinform..
[13] Emmanuel Barillot,et al. BiNoM: a Cytoscape plugin for manipulating and analyzing biological networks , 2008, Bioinform..
[14] W. S. Hlavacek,et al. A network model of early events in epidermal growth factor receptor signaling that accounts for combinatorial complexity. , 2006, Bio Systems.
[15] Hiroyuki Ogata,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 1999, Nucleic Acids Res..
[16] Nicolas Le Novère,et al. Model storage, exchange and integration , 2006, BMC Neuroscience.
[17] Edda Klipp,et al. SBMLmerge, a system for combining biochemical network models. , 2006, Genome informatics. International Conference on Genome Informatics.
[18] C. Ouzounis,et al. Expansion of the BioCyc collection of pathway/genome databases to 160 genomes , 2005, Nucleic acids research.
[19] J. Weinstein,et al. Molecular interaction maps of bioregulatory networks: a general rubric for systems biology. , 2005, Molecular biology of the cell.
[20] Catherine M Lloyd,et al. CellML: its future, present and past. , 2004, Progress in biophysics and molecular biology.
[21] Hiroaki Kitano,et al. CellDesigner: a process diagram editor for gene-regulatory and biochemical networks , 2003 .
[22] Jacky L. Snoep,et al. BioModels Database: a free, centralized database of curated, published, quantitative kinetic models of biochemical and cellular systems , 2005, Nucleic Acids Res..
[23] Susumu Goto,et al. KEGG: Kyoto Encyclopedia of Genes and Genomes , 2000, Nucleic Acids Res..
[24] J C Schaff,et al. Virtual Cell modelling and simulation software environment. , 2008, IET systems biology.
[25] O Ruebenacker,et al. Complexity and modularity of intracellular networks: a systematic approach for modelling and simulation. , 2008, IET systems biology.
[26] Emek Demir,et al. PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways , 2002, Bioinform..