Metagenomic reconstructions of caecal microbiome in Landes, Roman and Zhedong White geese
暂无分享,去创建一个
[1] Zhenghong Xu,et al. Diversity and Comparison of Intestinal Desulfovibrio in Patients with Liver Cirrhosis and Healthy People , 2023, Microorganisms.
[2] Shuxun Liu,et al. A Class IIb Bacteriocin Plantaricin NC8 Modulates Gut Microbiota of Different Enterotypes in vitro , 2022, Frontiers in Nutrition.
[3] Qian Bai,et al. Protective Effect of Bifidobacterium lactis JYBR-190 on Intestinal Mucosal Damage in Chicks Infected With Salmonella pullorum , 2022, Frontiers in Veterinary Science.
[4] M. Wahlqvist,et al. Mapping the human gut mycobiome in middle-aged and elderly adults: multiomics insights and implications for host metabolic health , 2022, Gut.
[5] Y. Ran,et al. Multiomics Study Reveals Enterococcus and Subdoligranulum Are Beneficial to Necrotizing Enterocolitis , 2021, Frontiers in Microbiology.
[6] M. Sousa,et al. Improvement of Torulaspora delbrueckii Genome Annotation: Towards the Exploitation of Genomic Features of a Biotechnologically Relevant Yeast , 2021, Journal of fungi.
[7] Jianmin Yuan,et al. Flaxseed diet caused inflammation by altering the gut microbiota of Peking ducks , 2020, Animal biotechnology.
[8] E. Prifti,et al. From correlation to causality: the case of Subdoligranulum , 2020, Gut microbes.
[9] Wenchao Liu,et al. Protective effects of dietary betaine on intestinal barrier function and cecal microbial community in indigenous broiler chickens exposed to high temperature environment , 2020, Environmental Science and Pollution Research.
[10] Luke R. Thompson,et al. Two hundred and fifty-four metagenome-assembled bacterial genomes from the bank vole gut microbiota , 2020, Scientific data.
[11] Guohong Chen,et al. Effects of marketable ages on meat quality through fiber characteristics in the goose. , 2020, Poultry science.
[12] Xiaolun Sun,et al. Sodium Butyrate Reduces Salmonella Enteritidis Infection of Chicken Enterocytes and Expression of Inflammatory Host Genes in vitro , 2020, Frontiers in Microbiology.
[13] Long Li,et al. 1-Deoxynojirimycin from mulberry leaves changes gut digestion and microbiota composition in geese , 2020, Poultry science.
[14] Juanjuan Chen,et al. Dietary κ-carrageenan facilitates gut microbiota-mediated intestinal inflammation. , 2020, Carbohydrate polymers.
[15] Hua Yang,et al. A Serum Metabolic Profiling Analysis During the Formation of Fatty Liver in Landes Geese via GC-TOF/MS , 2020, Frontiers in Physiology.
[16] Edoardo Pasolli,et al. Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0 , 2020, Nature Communications.
[17] Hua Yang,et al. Biogeography of microbiome and short-chain fatty acids in the gastrointestinal tract of duck , 2020, Poultry science.
[18] M. Trivedi,et al. Reduced anti-inflammatory gut microbiota are associated with depression and anhedonia. , 2020, Journal of affective disorders.
[19] Thomas Ulas,et al. Modeling population heterogeneity from microbial communities to immune response in cells , 2019, Cellular and Molecular Life Sciences.
[20] D. Cockburn,et al. Resistant starch: impact on the gut microbiome and health. , 2019, Current opinion in biotechnology.
[21] Yun Deng,et al. Prevotella copri is associated with carboplatin-induced gut toxicity , 2019, Cell Death & Disease.
[22] Mick Watson,et al. Assembly of hundreds of novel bacterial genomes from the chicken caecum , 2019, Genome Biology.
[23] T. Kubasová,et al. Use of 16S rRNA gene sequencing for prediction of new opportunistic pathogens in chicken ileal and cecal microbiota. , 2019, Poultry science.
[24] Cuong Pham-Quoc,et al. A high‐performance FPGA‐based BWA‐MEM DNA sequence alignment , 2019, Concurr. Comput. Pract. Exp..
[25] P. Bork,et al. Interactive Tree Of Life (iTOL) v4: recent updates and new developments , 2019, Nucleic Acids Res..
[26] R. Zijlstra,et al. Metagenomic reconstructions of gut microbial metabolism in weanling pigs , 2019, Microbiome.
[27] Muhammad Zeeshan Shabbir,et al. Transcriptome and Proteome Alternation With Resistance to Bacillus thuringiensis Cry1Ah Toxin in Ostrinia furnacalis , 2019, Front. Physiol..
[28] M. Duclos,et al. Functional genomics of the digestive tract in broilers , 2018, BMC Genomics.
[29] Wei Fan,et al. The chicken gut metagenome and the modulatory effects of plant-derived benzylisoquinoline alkaloids , 2018, Microbiome.
[30] J. Parkinson,et al. Lactobacillus elicits a 'Marmite effect' on the chicken cecal microbiome , 2018, npj Biofilms and Microbiomes.
[31] Guojun Liu,et al. Gut microbiota correlates with fiber and apparent nutrients digestion in goose , 2018, Poultry science.
[32] D. Raoult,et al. Description of Mediterraneibacter massiliensis, gen. nov., sp. nov., a new genus isolated from the gut microbiota of an obese patient and reclassification of Ruminococcus faecis, Ruminococcus lactaris, Ruminococcus torques, Ruminococcus gnavus and Clostridium glycyrrhizinilyticum as Mediterraneibact , 2018, Antonie van Leeuwenhoek.
[33] H. Yang,et al. Microbial community and short‐chain fatty acid profile in gastrointestinal tract of goose , 2018, Poultry science.
[34] C. Manichanh,et al. Restoration of a healthy intestinal microbiota normalizes portal hypertension in a rat model of nonalcoholic steatohepatitis , 2018, Hepatology.
[35] Zhenhong Yuan,et al. Effect of salinity on the microbial community and performance on anaerobic digestion of marine macroalgae , 2017 .
[36] Xu Zi,et al. Cassava foliage affects the microbial diversity of Chinese indigenous geese caecum using 16S rRNA sequencing , 2017, Scientific Reports.
[37] Geet Duggal,et al. Salmon: fast and bias-aware quantification of transcript expression using dual-phase inference , 2017, Nature Methods.
[38] Fabiano L. Thompson,et al. Diversity of Microbial Carbohydrate-Active enZYmes (CAZYmes) Associated with Freshwater and Soil Samples from Caatinga Biome , 2017, Microbial Ecology.
[39] Jing Yu,et al. Transcriptome analysis of follicles reveals the importance of autophagy and hormones in regulating broodiness of Zhedong white goose , 2016, Scientific Reports.
[40] M. Soons,et al. Seed dispersal potential by wild mallard duck as estimated from digestive tract analysis , 2016 .
[41] Yixiang Shi,et al. Genome and metagenome analyses reveal adaptive evolution of the host and interaction with the gut microbiota in the goose , 2016, Scientific Reports.
[42] D. O. Hessen,et al. Global change and ecosystem connectivity: How geese link fields of central Europe to eutrophication of Arctic freshwaters , 2016, Ambio.
[43] Jian Cao,et al. High‐throughput sequencing reveals the core gut microbiome of Bar‐headed goose (Anser indicus) in different wintering areas in Tibet , 2016, MicrobiologyOpen.
[44] B. Bohannan,et al. The composition of the zebrafish intestinal microbial community varies across development , 2015, The ISME Journal.
[45] Connor T. Skennerton,et al. CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes , 2015, Genome research.
[46] P. Vandamme,et al. Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis , 2014, International journal of systematic and evolutionary microbiology.
[47] Roland Eils,et al. circlize implements and enhances circular visualization in R , 2014, Bioinform..
[48] Kunihiko Sadakane,et al. MEGAHIT: an ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph , 2014, Bioinform..
[49] Björn Usadel,et al. Trimmomatic: a flexible trimmer for Illumina sequence data , 2014, Bioinform..
[50] Yu-Cheng Chang,et al. Methane Generation from the Intestine of Muscovy Ducks, Mule Ducks and White Roman Geese , 2014 .
[51] Susumu Goto,et al. Data, information, knowledge and principle: back to metabolism in KEGG , 2013, Nucleic Acids Res..
[52] Edward C. Uberbacher,et al. Gene and translation initiation site prediction in metagenomic sequences , 2012, Bioinform..
[53] M. Blaser,et al. Antibiotics in early life alter the murine colonic microbiome and adiposity , 2012, Nature.
[54] G. Michel,et al. Environmental and Gut Bacteroidetes: The Food Connection , 2011, Front. Microbio..
[55] L. R. Chen,et al. The Origin of the White Roman Goose , 2010, Biochemical Genetics.
[56] B. Finlay,et al. Gut microbiota in health and disease. , 2010, Physiological reviews.
[57] H. Matsui,et al. Microbial diversity in ostrich ceca as revealed by 16S ribosomal RNA gene clone library and detection of novel Fibrobacter species. , 2010, Anaerobe.
[58] Y. Chen,et al. In vivo methane production from formic and acetic acids in the gastrointestinal tract of white Roman geese. , 2009 .
[59] J. Doré,et al. The Firmicutes/Bacteroidetes ratio of the human microbiota changes with age , 2009, BMC Microbiology.
[60] Gonçalo R. Abecasis,et al. The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..
[61] D. Laubitz,et al. Sodium-butyrate as a growth promoter in milk replacer formula for young calves. , 2009, Journal of dairy science.
[62] M. Sakamoto,et al. Clostridium glycyrrhizinilyticum Sp. Nov., a Glycyrrhizin‐Hydrolysing Bacterium Isolated from Human Faeces , 2006, Microbiology and immunology.
[63] A. Moser,et al. Probiotics and antibodies to TNF inhibit inflammatory activity and improve nonalcoholic fatty liver disease , 2003, Hepatology.
[64] H. Flint,et al. The microbiology of butyrate formation in the human colon. , 2002, FEMS microbiology letters.
[65] H. Flint,et al. Bacterial diversity within the equine large intestine as revealed by molecular analysis of cloned 16S rRNA genes , 2001 .
[66] Z. Mroz,et al. Organic acids for performance enhancement in pig diets , 1999, Nutrition Research Reviews.
[67] B. Yu,et al. Effect of different sources of dietary fibre on growth performance, intestinal morphology and caecal carbohydrases of domestic geese. , 1998, British poultry science.
[68] Jian Cao,et al. Comparative analysis of the gastrointestinal microbial communities of bar-headed goose (Anser indicus) in different breeding patterns by high-throughput sequencing. , 2016, Microbiological research.
[69] Claude-Alain H. Roten,et al. Fast and accurate short read alignment with Burrows–Wheeler transform , 2009, Bioinform..