ConSurf 2005: the projection of evolutionary conservation scores of residues on protein structures
暂无分享,去创建一个
Itay Mayrose | Tal Pupko | Fabian Glaser | Nir Ben-Tal | Meytal Landau | Yossi Rosenberg | Eric Martz | N. Ben-Tal | F. Glaser | Yossi Rosenberg | T. Pupko | I. Mayrose | M. Landau | E. Martz
[1] M. O. Dayhoff,et al. Atlas of protein sequence and structure , 1965 .
[2] N. Saitou,et al. The neighbor-joining method: a new method for reconstructing phylogenetic trees. , 1987, Molecular biology and evolution.
[3] P. Kraulis. A program to produce both detailed and schematic plots of protein structures , 1991 .
[4] William R. Taylor,et al. The rapid generation of mutation data matrices from protein sequences , 1992, Comput. Appl. Biosci..
[5] J. Thompson,et al. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.
[6] R A Sayle,et al. RASMOL: biomolecular graphics for all. , 1995, Trends in biochemical sciences.
[7] J. Felsenstein. Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. , 1996, Methods in enzymology.
[8] F. Cohen,et al. An evolutionary trace method defines binding surfaces common to protein families. , 1996, Journal of molecular biology.
[9] E A Merritt,et al. Raster3D: photorealistic molecular graphics. , 1997, Methods in enzymology.
[10] Gapped BLAST and PSI-BLAST: A new , 1997 .
[11] Rolf Apweiler,et al. The SWISS-PROT protein sequence data bank and its supplement TrEMBL , 1997, Nucleic Acids Res..
[12] B. Chait,et al. The structure of the potassium channel: molecular basis of K+ conduction and selectivity. , 1998, Science.
[13] A. Bairoch,et al. The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999 , 1999, Nucleic Acids Res..
[14] P. Waddell,et al. Plastid Genome Phylogeny and a Model of Amino Acid Substitution for Proteins Encoded by Chloroplast DNA , 2000, Journal of Molecular Evolution.
[15] T. Blundell,et al. Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis. , 2000, Protein engineering.
[16] T. N. Bhat,et al. The Protein Data Bank , 2000, Nucleic Acids Res..
[17] Tal Pupko,et al. A structural EM algorithm for phylogenetic inference , 2001, J. Comput. Biol..
[18] S. Whelan,et al. A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. , 2001, Molecular biology and evolution.
[19] Itay Mayrose,et al. Rate4Site: an algorithmic tool for the identification of functional regions in proteins by surface mapping of evolutionary determinants within their homologues , 2002, ISMB.
[20] Eric Martz,et al. Protein Explorer: easy yet powerful macromolecular visualization. , 2002, Trends in biochemical sciences.
[21] Y. Inagaki,et al. Testing for differences in rates-across-sites distributions in phylogenetic subtrees. , 2002, Molecular biology and evolution.
[22] Tal Pupko,et al. Structural Genomics , 2005 .
[23] T. Pupko,et al. Site-Specific Evolutionary Rate Inference: Taking Phylogenetic Uncertainty into Account , 2005, Journal of Molecular Evolution.
[24] Janusz M. Bujnicki,et al. COLORADO3D, a web server for the visual analysis of protein structures , 2004, Nucleic Acids Res..
[25] N. Ben-Tal,et al. Comparison of site-specific rate-inference methods for protein sequences: empirical Bayesian methods are superior. , 2004, Molecular biology and evolution.
[26] C. Deprez,et al. Solution structure of the E.coli TolA C-terminal domain reveals conformational changes upon binding to the phage g3p N-terminal domain. , 2005, Journal of molecular biology.
[27] M. Hasegawa,et al. Model of amino acid substitution in proteins encoded by mitochondrial DNA , 1996, Journal of Molecular Evolution.