Biomarker identification by knowledge-driven multilevel ICA and motif analysis
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Robert Clarke | Zhen Zhang | Li Chen | Eric P. Hoffman | Jianhua Xuan | Yue Joseph Wang | Tian-Li Wang | Ie-Ming Shih | Chen Wang | E. Hoffman | I. Shih | Y. Wang | J. Xuan | R. Clarke | Tian-Li Wang | Zhen Zhang | Li Chen | Chen Wang
[1] Zhiping Weng,et al. PromoSer: a large-scale mammalian promoter and transcription start site identification service , 2003, Nucleic Acids Res..
[2] R. Tibshirani,et al. Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.
[3] Ana Conesa,et al. maSigPro: a Method to Identify Significantly Differential Expression Profiles in Time-Course Microarray Experiments , 2006, Spanish Bioinformatics Conference.
[4] S. Batzoglou,et al. Application of independent component analysis to microarrays , 2003, Genome Biology.
[5] David P. Kreil,et al. Independent component analysis of microarray data in the study of endometrial cancer , 2004, Oncogene.
[6] S. Schneider-Maunoury,et al. Multiple pituitary and ovarian defects in Krox-24 (NGFI-A, Egr-1)-targeted mice. , 1998, Molecular endocrinology.
[7] Masato Inoue,et al. BLIND GENE CLASSIFICATION BASED ON ICA OF MICROARRAY DATA , 2001 .
[8] Karin Milde-Langosch,et al. The Fos family of transcription factors and their role in tumourigenesis. , 2005, European journal of cancer.
[9] Alexander E. Kel,et al. TRANSFAC® and its module TRANSCompel®: transcriptional gene regulation in eukaryotes , 2005, Nucleic Acids Res..
[10] Sheng‐Chung Lee,et al. Functional interaction between nuclear matrix-associated HBXAP and NF-κB , 2004 .
[11] J. A. Hartigan,et al. A k-means clustering algorithm , 1979 .
[12] J. Devore,et al. Statistics: The Exploration and Analysis of Data , 1986 .
[13] Wolfram Liebermeister,et al. Linear modes of gene expression determined by independent component analysis , 2002, Bioinform..
[14] Ying Wang,et al. IL-8 Reduced Tumorigenicity of Human Ovarian Cancer In Vivo Due to Neutrophil Infiltration1 , 2000, The Journal of Immunology.
[15] John D. Storey,et al. Significance analysis of time course microarray experiments. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[16] Teuvo Kohonen,et al. Self-Organizing Maps , 2010 .
[17] Byoung-Tak Zhang,et al. Identification of regulatory modules by co-clustering latent variable models: stem cell differentiation , 2006, Bioinform..
[18] Alexander E. Kel,et al. MATCHTM: a tool for searching transcription factor binding sites in DNA sequences , 2003, Nucleic Acids Res..
[19] Aapo Hyvärinen,et al. Topographic Independent Component Analysis , 2001, Neural Computation.
[20] Giovanni Parmigiani,et al. Amplification of a chromatin remodeling gene, Rsf-1/HBXAP, in ovarian carcinoma. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[21] Robert Clarke,et al. Motif-directed network component analysis for regulatory network inference , 2008, BMC Bioinformatics.
[22] J. Richards,et al. Regulation of AP1 (Jun/Fos) Factor Expression and Activation in Ovarian Granulosa Cells , 2000, The Journal of Biological Chemistry.
[23] Lei Xu. Ovarian cancer angiogenesis, biology and therapy , 2000 .
[24] Jun S. Liu,et al. Integrating regulatory motif discovery and genome-wide expression analysis , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[25] Ryung S. Kim,et al. An improved distance measure between the expression profiles linking co-expression and co-regulation in mouse , 2006, BMC Bioinformatics.
[26] Chen Wang,et al. Stability-Based Dimension Estimation of ICA with Application to Microarray Data Analysis , 2007, BIOCOMP.
[27] Aapo Hyvärinen,et al. A Fast Fixed-Point Algorithm for Independent Component Analysis , 1997, Neural Computation.
[28] Adam A. Margolin,et al. Reverse engineering of regulatory networks in human B cells , 2005, Nature Genetics.
[29] Ralph S Freedman,et al. Ovarian cancer, the coagulation pathway, and inflammation , 2005, Journal of Translational Medicine.
[30] D. Pe’er,et al. Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data , 2003, Nature Genetics.