Bioengineering and Biotechnology Perspective Article a Systems Engineering Perspective on Homeostasis and Disease
暂无分享,去创建一个
[1] Gary An,et al. Toward Computational Identification of Multiscale “Tipping Points” in Acute Inflammation and Multiple Organ Failure , 2012, Annals of Biomedical Engineering.
[2] Gilles Clermont,et al. Evidence-based modeling of critical illness: an initial consensus from the Society for Complexity in Acute Illness. , 2007, Journal of critical care.
[3] Gary An,et al. An Overview of the Translational Dilemma and the Need for Translational Systems Biology of Inflammation , 2013 .
[4] Hiroaki Kitano,et al. Violations of robustness trade-offs , 2010, Molecular systems biology.
[5] Michael L Shuler,et al. Accelerating innovation between surgeons and biomedical engineers in the academic setting. , 2008, Surgery.
[6] L. Segel,et al. The immune system as a prototype of autonomous decentralized systems , 1997, 1997 IEEE International Conference on Systems, Man, and Cybernetics. Computational Cybernetics and Simulation.
[7] James P. Keener,et al. Mathematical physiology , 1998 .
[8] Mary F. McGuire,et al. Computational Approaches for Translational Clinical Research in Disease Progression , 2011, Journal of Investigative Medicine.
[9] Jeffrey Jopling,et al. Sepsis through the eyes of an engineer -- why treatments have succeeded and failed. , 2012, Critical reviews in biomedical engineering.
[10] Laroux Fs,et al. Mechanisms of inflammation: the good, the bad and the ugly. , 2004, Frontiers in bioscience : a journal and virtual library.
[11] Raghunathan Rengaswamy,et al. A review of process fault detection and diagnosis: Part III: Process history based methods , 2003, Comput. Chem. Eng..
[12] Yoram Vodovotz,et al. Translational systems biology of inflammation and healing , 2010, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society.
[13] David Moxey,et al. Glycolytic Oscillations and Limits on Robust Efficiency , 2011 .
[14] W. Ray. Periodic Operation of Polymerization Reactors , 1968 .
[15] W. Cannon. ORGANIZATION FOR PHYSIOLOGICAL HOMEOSTASIS , 1929 .
[16] Rainer Breitling,et al. What is Systems Biology? , 2010, Front. Physiology.
[17] Raghunathan Rengaswamy,et al. A review of process fault detection and diagnosis: Part I: Quantitative model-based methods , 2003, Comput. Chem. Eng..
[18] Gary An,et al. Translational Systems Biology: Introduction of an Engineering Approach to the Pathophysiology of the Burn Patient , 2008, Journal of burn care & research : official publication of the American Burn Association.
[19] Ioannis P. Androulakis,et al. In Silico Simulation of Corticosteroids Effect on an NFkB- Dependent Physicochemical Model of Systemic Inflammation , 2009, PloS one.
[20] Ioannis P. Androulakis,et al. Networks, biology and systems engineering: A case study in inflammation , 2009, Comput. Chem. Eng..
[21] Panagiota T. Foteinou,et al. Modeling endotoxin-induced systemic inflammation using an indirect response approach. , 2009, Mathematical biosciences.
[22] Raghunathan Rengaswamy,et al. A review of process fault detection and diagnosis: Part II: Qualitative models and search strategies , 2003, Comput. Chem. Eng..
[23] Stephen F. Lowry,et al. Roles of SIRT1 in the Acute and Restorative Phases following Induction of Inflammation* , 2010, The Journal of Biological Chemistry.
[24] G. Chrousos. Stress and disorders of the stress system , 2009, Nature Reviews Endocrinology.
[25] L. Segel,et al. On the role of feedback in promoting conflicting goals of the adaptive immune system. , 1999, Journal of immunology.
[26] Ioannis P Androulakis,et al. Modeling the influence of circadian rhythms on the acute inflammatory response. , 2010, Journal of theoretical biology.
[27] Timothy R Billiar,et al. In Silico Modeling: Methods and Applications to Trauma and Sepsis , 2013, Critical care medicine.
[28] Shichao Xu,et al. Plantwide process control with asynchronous sampling and communications , 2011 .
[29] D. S. Luciano,et al. Human Physiology: The Mechanism of Body Function , 1975 .
[30] Panagiotis D. Christofides,et al. Smart plant operations: Vision, progress and challenges , 2007 .
[31] Ioannis P Androulakis,et al. Transcriptional implications of ultradian glucocorticoid secretion in homeostasis and in the acute stress response. , 2012, Physiological genomics.
[32] Dan Braha,et al. Complex Engineered Systems: Science Meets Technology , 2010 .
[33] L. Hood,et al. Reverse Engineering of Biological Complexity , 2007 .
[34] J. Griffin. Human Physiology, The Mechanisms of Body Function , 1971 .
[35] J. Aschoff,et al. A Survey on Biological Rhythms , 1981 .
[36] A. Quarteroni. Mathematical Models in Science and Engineering , 2009 .
[37] D. Lauffenburger,et al. Computational modeling of the EGF-receptor system: a paradigm for systems biology. , 2003, Trends in cell biology.
[38] Gary An,et al. Computational and systems biology in trauma and sepsis: current state and future perspectives. , 2012, International journal of burns and trauma.
[39] Eberhard O Voit,et al. Mechanistic simulations of inflammation: current state and future prospects. , 2009, Mathematical biosciences.
[40] Brian J. Sauser,et al. Systomics: Toward a Biology of System of Systems , 2010, IEEE Transactions on Systems, Man, and Cybernetics - Part A: Systems and Humans.
[41] Arthur S Slutsky,et al. Circadian rhythms: From basic mechanisms to the intensive care unit* , 2012, Critical care medicine.
[42] Kevin J. Tracey,et al. The inflammatory reflex , 2002, Nature.
[43] G. Chauvet. Hierarchical functional organization of formal biological systems: a dynamical approach. II. The concept of non-symmetry leads to a criterion of evolution deduced from an optimum principle of the (O-FBS) sub-system. , 1993, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[44] L. Hood,et al. Systems cancer medicine: towards realization of predictive, preventive, personalized and participatory (P4) medicine , 2012, Journal of internal medicine.
[45] C. Gross. Claude Bernard and the Constancy of the Internal Environment , 1998 .
[46] Proctor P Reid,et al. Systems Engineering to Improve Traumatic Brain Injury Care in the Military Health System: Workshop Summary , 2009 .
[47] Timothy G Buchman,et al. Mathematical estimates of recovery after loss of activity: II. Long-range connectivity facilitates rapid functional recovery , 2008, Critical care medicine.
[48] K. Tracey. Physiology and immunology of the cholinergic antiinflammatory pathway. , 2007, The Journal of clinical investigation.
[49] T G Buchman,et al. Physiologic stability and physiologic state. , 1996, The Journal of trauma.
[50] John C Doyle,et al. Architecture, constraints, and behavior , 2011, Proceedings of the National Academy of Sciences.
[51] G. Chauvet. Hierarchical functional organization of formal biological systems: a dynamical approach. III. The concept of non-locality leads to a field theory describing the dynamics at each level of organization of the (D-FBS) sub-system. , 1993, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[52] N. Suh,et al. Complex Engineered Systems , 2006 .
[53] Daniel A Beard,et al. Computational modeling of physiological systems. , 2005, Physiological genomics.
[54] I. Androulakis,et al. Systems Biology of Circadian-Immune Interactions , 2012, Journal of Innate Immunity.
[55] Alexander R. A. Anderson,et al. Evolving Homeostatic Tissue Using Genetic Algorithms , 2011, ALIFE.
[56] James E. Bailey,et al. PERIODIC OPERATION OF CHEMICAL REACTORS: A REVIEW , 1974 .
[57] James R Faeder,et al. In vivo, in vitro, and in silico studies suggest a conserved immune module that regulates malaria parasite transmission from mammals to mosquitoes. , 2013, Journal of theoretical biology.
[58] Timothy G Buchman,et al. The digital patient: predicting physiologic dynamics with mathematical models. , 2009, Critical care medicine.
[59] T G Buchman,et al. Uncoupling of biological oscillators: a complementary hypothesis concerning the pathogenesis of multiple organ dysfunction syndrome. , 1996, Critical care medicine.
[60] Gary An,et al. Translational Systems Biology of Inflammation , 2008, PLoS Comput. Biol..
[61] Ioannis P Androulakis,et al. Entrainment of peripheral clock genes by cortisol. , 2012, Physiological genomics.
[62] F. S. Laroux,et al. MECHANISMS OF INFLAMMATION : THE GOOD , THE BAD AND THE UGLY , 2004 .
[63] T. Buchman. The community of the self , 2002, Nature.
[64] Edda Klipp,et al. Systems Biology , 1994 .
[65] Gary An,et al. A comparative approach for the investigation of biological information processing: An examination of the structure and function of computer hard drives and DNA , 2010, Theoretical Biology and Medical Modelling.
[66] John Doyle,et al. Linking Inflammation, Cardiorespiratory Variability, and Neural Control in Acute Inflammation via Computational Modeling , 2012, Front. Physio..
[67] Gabriel S. Eichler,et al. Cell fates as high-dimensional attractor states of a complex gene regulatory network. , 2005, Physical review letters.
[68] Atul J Butte,et al. Identification of complex metabolic states in critically injured patients using bioinformatic cluster analysis , 2010, Critical care.
[69] Leroy Hood,et al. Systems biology, proteomics, and the future of health care: toward predictive, preventative, and personalized medicine. , 2004, Journal of proteome research.
[70] Gilles Clermont,et al. From Inverse Problems in Mathematical Physiology to Quantitative Differential Diagnoses , 2007, PLoS Comput. Biol..
[71] Ioannis P. Androulakis,et al. An Agent-Based Model of Cellular Dynamics and Circadian Variability in Human Endotoxemia , 2013, PloS one.
[72] Ioannis P Androulakis,et al. Modeling autonomic regulation of cardiac function and heart rate variability in human endotoxemia. , 2011, Physiological genomics.
[73] S. Calvano,et al. In vivo endotoxin synchronizes and suppresses clock gene expression in human peripheral blood leukocytes* , 2010, Critical care medicine.
[74] S. Lowry,et al. The stressed host response to infection: the disruptive signals and rhythms of systemic inflammation. , 2009, The Surgical clinics of North America.
[75] Gary An,et al. Systems biology and inflammation. , 2010, Methods in molecular biology.
[76] Steve E. Calvano,et al. Continuous Enteral and Parenteral Feeding Each Reduces Heart Rate Variability But Differentially Influences Monocyte Gene Expression in Humans , 2012, Shock.
[77] L. Segel,et al. Immunology Viewed as the Study of an Autonomous Decentralized System , 1998 .
[78] Randolph M. Nesse,et al. Evolutionary Origins and Functions of the Stress Response , 2007 .
[79] D. Goldstein,et al. Evolution of concepts of stress , 2007, Stress.
[80] J. Tyson,et al. Design principles of biochemical oscillators , 2008, Nature Reviews Molecular Cell Biology.
[81] Gilles Clermont,et al. Systems engineering medicine: engineering the inflammation response to infectious and traumatic challenges , 2010, Journal of The Royal Society Interface.
[82] Albert Renken,et al. The use of periodic operation to improve the performance of continuous stirred tank reactors , 1972 .
[83] G A Chauvet,et al. Hierarchical functional organization of formal biological systems: a dynamical approach. I. The increase of complexity by self-association increases the domain of stability of a biological system. , 1993, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.
[84] Bernhard O. Palsson,et al. Systems Biology: Simulation of Dynamic Network States , 2011 .
[85] Timothy G Buchman,et al. Novel representation of physiologic states during critical illness and recovery , 2010, Critical care.
[86] Gintaras V. Reklaitis,et al. Approaches to asynchronous decentralized decision making , 1999 .
[87] I. Androulakis,et al. Multiscale model for the assessment of autonomic dysfunction in human endotoxemia. , 2010, Physiological genomics.
[88] J H Siegel,et al. Physiologic state severity classification as an indicator of posttrauma cytokine response. , 1995, Shock.
[89] J. E. Bailey,et al. Cyclic operation of reaction systems: Effects of heat and mass transfer resistance , 1971 .
[90] J. M. Douglas,et al. The interface between design and control. 3. Selecting a set of controlled variables , 1988 .
[91] Panagiota T. Foteinou,et al. Translational Potential of Systems‐Based Models of Inflammation , 2009, Clinical and translational science.
[92] M. Savageau. Comparison of classical and autogenous systems of regulation in inducible operons , 1974, Nature.
[93] Ronald G. Tompkins,et al. A Genomic Score Prognostic of Outcome in Trauma Patients , 2009, Molecular medicine.
[94] M. Tewari,et al. The Limits of Reductionism in Medicine: Could Systems Biology Offer an Alternative? , 2006, PLoS medicine.
[95] Roger E Bumgarner,et al. Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. , 2001, Science.
[96] S. Calvano,et al. Challenges for modeling and interpreting the complex biology of severe injury and inflammation , 2008, Journal of leukocyte biology.
[97] Carl Nathan,et al. Points of control in inflammation , 2002, Nature.
[98] Kendell R. Jillson,et al. Process networks with decentralized inventory and flow control , 2007 .