Engineering the vibrational coherence of vision into a synthetic molecular device

The light-induced double-bond isomerization of the visual pigment rhodopsin operates a molecular-level optomechanical energy transduction, which triggers a crucial protein structure change. In fact, rhodopsin isomerization occurs according to a unique, ultrafast mechanism that preserves mode-specific vibrational coherence all the way from the reactant excited state to the primary photoproduct ground state. The engineering of such an energy-funnelling function in synthetic compounds would pave the way towards biomimetic molecular machines capable of achieving optimum light-to-mechanical energy conversion. Here we use resonance and off-resonance vibrational coherence spectroscopy to demonstrate that a rhodopsin-like isomerization operates in a biomimetic molecular switch in solution. Furthermore, by using quantum chemical simulations, we show why the observed coherent nuclear motion critically depends on minor chemical modifications capable to induce specific geometric and electronic effects. This finding provides a strategy for engineering vibrationally coherent motions in other synthetic systems.The ultrafast, vibrationally coherent photoisomerization of rhodopsin is a model of efficient photomechanical energy conversion at the molecular scale. Here, the authors demonstrate a similar photoreaction in synthetic compounds, unraveling the underlying mechanism and discussing its implications.

[1]  F. van Mourik,et al.  Vibrational coherences and relaxation in the high-spin state of aqueous [Fe(II)(bpy)3]2+. , 2009, Angewandte Chemie.

[2]  N. Ferré,et al.  Unique QM/MM Potential Energy Surface Exploration Using Microiterations , 2011 .

[3]  R. Lindh,et al.  Mapping the Excited State Potential Energy Surface of a Retinal Chromophore Model with Multireference and Equation-of-Motion Coupled-Cluster Methods. , 2013, Journal of chemical theory and computation.

[4]  N. Ferré,et al.  Tracking the excited-state time evolution of the visual pigment with multiconfigurational quantum chemistry , 2007, Proceedings of the National Academy of Sciences.

[5]  J. Léonard,et al.  Broadband UV-Vis vibrational coherence spectrometer based on a hollow fiber compressor. , 2016, The Review of scientific instruments.

[6]  Massimo Olivucci,et al.  Photoisomerization and relaxation dynamics of a structurally modified biomimetic photoswitch. , 2012, The journal of physical chemistry. A.

[7]  Roland Lindh,et al.  Shape of Multireference, Equation-of-Motion Coupled-Cluster, and Density Functional Theory Potential Energy Surfaces at a Conical Intersection. , 2014, Journal of chemical theory and computation.

[8]  María Del Carmen Marín,et al.  An Average Solvent Electrostatic Configuration Protocol for QM/MM Free Energy Optimization: Implementation and Application to Rhodopsin Systems. , 2017, Journal of chemical theory and computation.

[9]  M Olivucci,et al.  Computational evidence in favor of a two-state, two-mode model of the retinal chromophore photoisomerization. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[10]  S. Haacke,et al.  100 fs photo-isomerization with vibrational coherences but low quantum yield in Anabaena Sensory Rhodopsin. , 2015, Physical chemistry chemical physics : PCCP.

[11]  S. Mukamel,et al.  Temperature dependence and non-Condon effects in pump-probe spectroscopy in the condensed phase , 1993 .

[12]  Roland Lindh,et al.  Dynamic Electron Correlation Effects on the Ground State Potential Energy Surface of a Retinal Chromophore Model. , 2012, Journal of chemical theory and computation.

[13]  N. Ferré,et al.  An artificial molecular switch that mimics the visual pigment and completes its photocycle in picoseconds , 2008, Proceedings of the National Academy of Sciences.

[14]  R. Mathies,et al.  Conical intersection dynamics of the primary photoisomerization event in vision , 2010, Nature.

[15]  Graham R Fleming,et al.  Lessons from nature about solar light harvesting. , 2011, Nature chemistry.

[16]  FRANCESCO AQUILANTE,et al.  MOLCAS 7: The Next Generation , 2010, J. Comput. Chem..

[17]  J. Bigot,et al.  Evolution of the vibronic absorption spectrum in a molecule following impulsive excitation with a 6 fs optical pulse , 1989 .

[18]  Massimo Olivucci,et al.  Probing the Photodynamics of Rhodopsins with Reduced Retinal Chromophores. , 2016, Journal of chemical theory and computation.

[19]  U. Banin,et al.  Ultrafast photodissociation of I3. Coherent photochemistry in solution , 1993 .

[20]  C. Manzoni,et al.  Optimized ancillae generation for ultra-broadband two-dimensional spectral shearing interferometry , 2015, 2015 Conference on Lasers and Electro-Optics (CLEO).

[21]  P. Kukura,et al.  Principles and Applications of Broadband Impulsive Vibrational Spectroscopy. , 2015, The journal of physical chemistry. A.

[22]  Felipe Zapata,et al.  Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table , 2016, J. Comput. Chem..

[23]  A. Zaitsevskii,et al.  Multiconfigurational second-order perturbative methods: Overview and comparison of basic properties , 1995 .

[24]  H. C. Georg,et al.  Combining ab initio multiconfigurational and Free Energy Gradient methods to study the π–π* excited state structure and properties of uracil in water , 2014 .

[25]  Sylvio Canuto,et al.  An efficient statistically converged average configuration for solvent effects , 2007 .

[26]  Roland Lindh,et al.  The ultrafast photoisomerizations of rhodopsin and bathorhodopsin are modulated by bond length alternation and HOOP driven electronic effects. , 2011, Journal of the American Chemical Society.

[27]  E. Heller,et al.  Time‐dependent theory of Raman scattering , 1979 .

[28]  Sylvio Canuto,et al.  Solvation effects on molecules and biomolecules : computational methods and applications , 2008 .

[29]  H. Dartnall The photosensitivities of visual pigments in the presence of hydroxylamine. , 1968, Vision research.

[30]  K. B. Whaley,et al.  Using coherence to enhance function in chemical and biophysical systems , 2017, Nature.

[31]  R. Mathies,et al.  Wave packet theory of dynamic absorption spectra in femtosecond pump–probe experiments , 1990 .

[32]  Optimized ancillae generation for ultra-broadband two-dimensional spectral shearing interferometry , 2015, CLEO 2015.

[33]  Masataka Nagaoka,et al.  Structure optimization via free energy gradient method: Application to glycine zwitterion in aqueous solution , 2000 .

[34]  Hajime Hirao,et al.  Transition-state optimization by the free energy gradient method : Application to aqueous-phase Menshutkin reaction between ammonia and methyl chloride , 2001 .

[35]  K. Nelson,et al.  Time-resolved vibrational spectroscopy in the impulsive limit , 1994 .

[36]  Massimo Olivucci,et al.  Mechanistic origin of the vibrational coherence accompanying the photoreaction of biomimetic molecular switches. , 2012, Chemistry.

[37]  P. Kukura,et al.  Synthetic control of retinal photochemistry and photophysics in solution. , 2014, Journal of the American Chemical Society.

[38]  Masataka Nagaoka,et al.  Transition‐state optimization on free energy surface: Toward solution chemical reaction ergodography , 1998 .

[39]  R A Mathies,et al.  Vibrationally coherent photochemistry in the femtosecond primary event of vision. , 1994, Science.

[40]  A. Granovsky,et al.  Extended multi-configuration quasi-degenerate perturbation theory: the new approach to multi-state multi-reference perturbation theory. , 2011, The Journal of chemical physics.

[41]  Björn O. Roos,et al.  Second-order perturbation theory with a complete active space self-consistent field reference function , 1992 .

[42]  Linda A. Peteanu,et al.  Femtosecond impulsive excitation of nonstationary vibrational states in bacteriorhodopsin , 1992 .

[43]  G. Collins The next generation. , 2006, Scientific American.

[44]  Philipp Kukura,et al.  Mode-specificity of vibrationally coherent internal conversion in rhodopsin during the primary visual event. , 2015, Journal of the American Chemical Society.

[45]  M. Chergui,et al.  Coherent ultrafast torsional motion and isomerization of a biomimetic dipolar photoswitch. , 2010, Physical chemistry chemical physics : PCCP.

[46]  Franz X Kärtner,et al.  Two-dimensional spectral shearing interferometry for few-cycle pulse characterization. , 2006, Optics letters.

[47]  J. Wachtveitl,et al.  Vibrational coherence transfer in an electronically decoupled molecular dyad , 2015, Scientific Reports.

[48]  N. Ferré,et al.  Quantum chemical modeling and preparation of a biomimetic photochemical switch. , 2007, Angewandte Chemie.

[49]  R. Mathies,et al.  Analysis of femtosecond dynamic absorption spectra of nonstationary states. , 1992, Annual review of physical chemistry.

[50]  Peter M. Kasson,et al.  GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit , 2013, Bioinform..

[51]  R A Mathies,et al.  The first step in vision: femtosecond isomerization of rhodopsin. , 1991, Science.

[52]  W. L. Jorgensen,et al.  Development and Testing of the OPLS All-Atom Force Field on Conformational Energetics and Properties of Organic Liquids , 1996 .

[53]  V. Prokhorenko,et al.  Local vibrational coherences drive the primary photochemistry of vision. , 2015, Nature chemistry.

[54]  Mokhtari,et al.  Resonant impulsive-stimulated Raman scattering on malachite green. , 1988, Physical review. A, General physics.

[55]  Massimo Olivucci,et al.  Initial excited-state dynamics of an N-alkylated indanylidene-pyrroline (NAIP) rhodopsin analog. , 2014, The journal of physical chemistry. B.

[56]  M. Olivucci,et al.  Molecular bases for the selection of the chromophore of animal rhodopsins , 2015, Proceedings of the National Academy of Sciences.

[57]  K. Nelson,et al.  Coherent molecular vibrational motion observed in the time domain through impulsive stimulated Raman scattering , 1988 .

[58]  Tõnu Pullerits,et al.  Origin of Long-Lived Coherences in Light-Harvesting Complexes , 2012, The journal of physical chemistry. B.

[59]  H. C. Georg,et al.  Electronic properties of water in liquid environment. A sequential QM/MM study using the free energy gradient method. , 2012, The journal of physical chemistry. B.

[60]  M. Olivucci,et al.  Design, Synthesis, and Dynamics of a Green Fluorescent Protein Fluorophore Mimic with an Ultrafast Switching Function. , 2016, Journal of the American Chemical Society.