Phylogenetic Approach Reveals That Virus Genotype Largely Determines HIV Set-Point Viral Load
暂无分享,去创建一个
A. Telenti | H. Günthard | M. Battegay | H. Furrer | P. Vernazza | E. Bernasconi | S. Yerly | T. Klimkait | B. Hirschel | S. Bonhoeffer | J. Böni | R. Kouyos | A. Rauch | T. Stadler | V. von Wyl | P. Bürgisser | Samuel Alizon | C. Shah | P. Bürgisser
[1] Amalio Telenti,et al. Cohort profile: the Swiss HIV Cohort study. , 2010, International journal of epidemiology.
[2] Marion Cornelissen,et al. HIV RNA levels in transmission sources only weakly predict plasma viral load in recipients. , 2010, AIDS.
[3] Matthias Cavassini,et al. Molecular epidemiology reveals long-term changes in HIV type 1 subtype B transmission in Switzerland. , 2010, The Journal of infectious diseases.
[4] H. Günthard,et al. HIV-1 transmission after cessation of early antiretroviral therapy among men having sex with men , 2010, AIDS.
[5] Christl A. Donnelly,et al. HIV-1 Transmitting Couples Have Similar Viral Load Set-Points in Rakai, Uganda , 2010, PLoS pathogens.
[6] Wendy Hartogensis,et al. HIV RNA level in early infection is predicted by viral load in the transmission source , 2010, AIDS.
[7] The Swiss,et al. Cohort Profile: The Swiss HIV Cohort Study , 2010 .
[8] Elizabeth T. Cirulli,et al. Common Genetic Variation and the Control of HIV-1 in Humans , 2009, PLoS genetics.
[9] Ard van Sighem,et al. Viral Load Levels Measured at Set-Point Have Risen Over the Last Decade of the HIV Epidemic in the Netherlands , 2009, PloS one.
[10] R. Freckleton. The seven deadly sins of comparative analysis , 2009, Journal of evolutionary biology.
[11] C. Rouzioux,et al. No evidence of a change in HIV-1 virulence since 1996 in France , 2009, AIDS (London).
[12] Carlo Torti,et al. Increasing Clinical Virulence in Two Decades of the Italian HIV Epidemic , 2009, PLoS pathogens.
[13] Patrick Taffé,et al. A joint back calculation model for the imputation of the date of HIV infection in a prevalent cohort , 2008, Statistics in medicine.
[14] Christophe Fraser,et al. HIV-1 transmission, by stage of infection. , 2008, The Journal of infectious diseases.
[15] A. Ives,et al. Morphometrics of the Avian Small Intestine Compared with That of Nonflying Mammals: A Phylogenetic Approach , 2008, Physiological and Biochemical Zoology.
[16] Philip J. R. Goulder,et al. Impact of MHC class I diversity on immune control of immunodeficiency virus replication , 2008, Nature Reviews Immunology.
[17] S. Hammer,et al. Antiretroviral drug resistance testing in adult HIV-1 infection: 2008 recommendations of an International AIDS Society-USA panel. , 2008, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[18] R. Weber,et al. Delayed diagnosis of HIV infection and late initiation of antiretroviral therapy in the Swiss HIV Cohort Study , 2008, HIV medicine.
[19] O. Pybus,et al. Correlating viral phenotypes with phylogeny: accounting for phylogenetic uncertainty. , 2008, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.
[20] S. Hammer,et al. The challenge of HIV-1 subtype diversity. , 2008, The New England journal of medicine.
[21] J. Margolick,et al. Lack of Evidence for Changing Virulence of HIV-1 in North America , 2008, PloS one.
[22] A. Rambaut,et al. BEAST: Bayesian evolutionary analysis by sampling trees , 2007, BMC Evolutionary Biology.
[23] T. Déirdre Hollingsworth,et al. Variation in HIV-1 set-point viral load: Epidemiological analysis and an evolutionary hypothesis , 2007, Proceedings of the National Academy of Sciences.
[24] A. Telenti,et al. Emergence of HIV-1 drug resistance in previously untreated patients initiating combination antiretroviral treatment: a comparison of different regimen types. , 2007, Archives of internal medicine.
[25] Jacques Fellay,et al. A Whole-Genome Association Study of Major Determinants for Host Control of HIV-1 , 2007, Science.
[26] Barbara R. Holland,et al. Analysis of Phylogenetics and Evolution with R , 2007 .
[27] Roger Detels,et al. Prognostic value of HIV-1 RNA, CD4 cell count, and CD4 Cell count slope for progression to AIDS and death in untreated HIV-1 infection. , 2007, JAMA.
[28] Jintanat Ananworanich,et al. Predictors of disease progression in HIV infection: a review , 2007, AIDS research and therapy.
[29] A. Phillips,et al. Temporal trends in postseroconversion CD4 cell count and HIV load: the Concerted Action on Seroconversion to AIDS and Death in Europe Collaboration, 1985-2002. , 2007, The Journal of infectious diseases.
[30] E. Arts,et al. Is HIV-1 evolving to a less virulent form in humans? , 2007, Nature Reviews Microbiology.
[31] Sergei L. Kosakovsky Pond,et al. Synonymous Substitution Rates Predict HIV Disease Progression as a Result of Underlying Replication Dynamics , 2007, PLoS Comput. Biol..
[32] Andrew Meade,et al. Constrained models of evolution lead to improved prediction of functional linkage from correlated gain and loss of genes , 2007, Bioinform..
[33] David R Bangsberg,et al. Predictive value of plasma HIV RNA level on rate of CD4 T-cell decline in untreated HIV infection. , 2006, JAMA.
[34] Sebastian Bonhoeffer,et al. Stable virulence levels in the HIV epidemic of Switzerland over two decades , 2006, AIDS.
[35] E. Arts,et al. Replicative fitness of historical and recent HIV-1 isolates suggests HIV-1 attenuation over time , 2005, AIDS.
[36] A. Mocroft,et al. Influence of hepatitis C virus infection on HIV-1 disease progression and response to highly active antiretroviral therapy. , 2005, The Journal of infectious diseases.
[37] Charles R. Brown,et al. Plateau Levels of Viremia Correlate with the Degree of CD4+-T-Cell Loss in Simian Immunodeficiency Virus SIVagm-Infected Pigtailed Macaques: Variable Pathogenicity of Natural SIVagm Isolates , 2005, Journal of Virology.
[38] The Swiss Hiv Cohort Study,et al. The Swiss HIV Cohort Study: Rationale, organization and selected baseline characteristics , 2005, Sozial- und Präventivmedizin.
[39] D. Penny. Inferring Phylogenies.—Joseph Felsenstein. 2003. Sinauer Associates, Sunderland, Massachusetts. , 2004 .
[40] Jianming Tang,et al. HLA allele sharing and HIV type 1 viremia in seroconverting Zambians with known transmitting partners. , 2004, AIDS research and human retroviruses.
[41] Stéphane Hué,et al. HIV-1 pol gene variation is sufficient for reconstruction of transmissions in the era of antiretroviral therapy , 2004, AIDS.
[42] Korbinian Strimmer,et al. APE: Analyses of Phylogenetics and Evolution in R language , 2004, Bioinform..
[43] M. Lynch,et al. The Phylogenetic Mixed Model , 2004, The American Naturalist.
[44] Athina Tatsioni,et al. Maternal viral load and rate of disease progression among vertically HIV-1-infected children: an international meta-analysis , 2003, AIDS.
[45] K. Crandall,et al. The causes and consequences of HIV evolution , 2004, Nature Reviews Genetics.
[46] Sebastian Bonhoeffer,et al. Glancing behind virus load variation in HIV-1 infection. , 2003, Trends in microbiology.
[47] O. Gascuel,et al. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. , 2003, Systematic biology.
[48] G. Touloumi. Differences in CD4 cell counts at seroconversion and decline among 5739 HIV-1-infected individuals with well-estimated dates of seroconversion , 2003 .
[49] M. Prins,et al. Differences in CD4 Cell Counts at Seroconversion and Decline Among 5739 HIV-1–Infected Individuals with Well-Estimated Dates of Seroconversion , 2003, Journal of acquired immune deficiency syndromes.
[50] Thomas Lengauer,et al. Geno2pheno: estimating phenotypic drug resistance from HIV-1 genotypes , 2003, Nucleic Acids Res..
[51] James Theiler,et al. Advantage of rare HLA supertype in HIV disease progression , 2003, Nature Medicine.
[52] T. Garland,et al. TESTING FOR PHYLOGENETIC SIGNAL IN COMPARATIVE DATA: BEHAVIORAL TRAITS ARE MORE LABILE , 2003, Evolution; international journal of organic evolution.
[53] M. Pagel,et al. Phylogenetic Analysis and Comparative Data: A Test and Review of Evidence , 2002, The American Naturalist.
[54] Hiv Survival,et al. Time from HIV-1 seroconversion to AIDS and death before widespread use of highly-active antiretroviral therapy: a collaborative re-analysis , 2000, The Lancet.
[55] R H Lyles,et al. Natural history of human immunodeficiency virus type 1 viremia after seroconversion and proximal to AIDS in a large cohort of homosexual men. Multicenter AIDS Cohort Study. , 2000, The Journal of infectious diseases.
[56] Anthony R. Ives,et al. Using the Past to Predict the Present: Confidence Intervals for Regression Equations in Phylogenetic Comparative Methods , 2000, The American Naturalist.
[57] P. Vanhems,et al. Association between the rate of CD4+ T cell decrease and the year of human immunodeficiency virus (HIV) type 1 seroconversion among persons enrolled in the Swiss HIV cohort study. , 1999, The Journal of infectious diseases.
[58] W. Ewens. Genetics and analysis of quantitative traits , 1999 .
[59] A. Telenti,et al. Clinical progression and virological failure on highly active antiretroviral therapy in HIV-1 patients: a prospective cohort study , 1999, The Lancet.
[60] I. Thior,et al. Human immunodeficiency virus type 1 subtypes differ in disease progression. , 1999, The Journal of infectious diseases.
[61] Roger Detels,et al. Plasma Viral Load and CD4+ Lymphocytes as Prognostic Markers of HIV-1 Infection , 1997, Annals of Internal Medicine.
[62] R. Raiteri,et al. Is the clinical course of HIV-1 changing? Cohort study , 1997, BMJ.
[63] T. F. Hansen,et al. Phylogenies and the Comparative Method: A General Approach to Incorporating Phylogenetic Information into the Analysis of Interspecific Data , 1997, The American Naturalist.
[64] I. Keet,et al. Temporal trends of the natural history of HIV-1 infection following seroconversion between 1984 and 1993. , 1996, AIDS.
[65] M. Uhlén,et al. Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[66] J. Montaner,et al. Variation in plasma RNA levels, CD4 cell counts, and p24 antigen levels in clinically stable men with human immunodeficiency virus infection. , 1996, The Journal of infectious diseases.
[67] John W. Mellors,et al. Prognosis in HIV-1 Infection Predicted by the Quantity of Virus in Plasma , 1996, Science.
[68] J. Phair,et al. Evaluation of secular trends in CD4+ lymphocyte loss among human immunodeficiency virus type 1 (HIV-1)-infected men with known dates of seroconversion. , 1995, American journal of epidemiology.
[69] D. Vlahov,et al. Recent infection with human immunodeficiency virus and possible rapid loss of CD4 T lymphocytes. , 1995, Journal of acquired immune deficiency syndromes and human retrovirology : official publication of the International Retrovirology Association.
[70] J. Kaldor,et al. HIV infection in recipients of blood products from donors with known duration of infection , 1994, The Lancet.
[71] S. Buchbinder,et al. Long‐term HIV‐1 infection without immunologic progression , 1994, AIDS.
[72] M. Pagel. Detecting correlated evolution on phylogenies: a general method for the comparative analysis of discrete characters , 1994, Proceedings of the Royal Society of London. Series B: Biological Sciences.
[73] M. Lynch. METHODS FOR THE ANALYSIS OF COMPARATIVE DATA IN EVOLUTIONARY BIOLOGY , 1991, Evolution; international journal of organic evolution.
[74] G. Rutherford,et al. The natural history of transfusion-associated infection with human immunodeficiency virus. Factors influencing the rate of progression to disease. , 1989, The New England journal of medicine.
[75] J. Felsenstein. Phylogenies and the Comparative Method , 1985, The American Naturalist.
[76] R M May,et al. Coevolution of hosts and parasites , 1982, Parasitology.
[77] A. I.,et al. Neural Field Continuum Limits and the Structure–Function Partitioning of Cognitive–Emotional Brain Networks , 2023, Biology.