Genome Mapping and Genomics in Human and Non-Human Primates

[1]  Adrian W. Briggs,et al.  A High-Coverage Genome Sequence from an Archaic Denisovan Individual , 2012, Science.

[2]  M. Ratain,et al.  Germline pharmacogenomics in oncology: Decoding the patient for targeting therapy , 2012, Molecular oncology.

[3]  I-Min A. Chen,et al.  The Genomes OnLine Database (GOLD) v.4: status of genomic and metagenomic projects and their associated metadata , 2011, Nucleic Acids Res..

[4]  Ryan Mills,et al.  Comprehensive assessment of array-based platforms and calling algorithms for detection of copy number variants , 2011, Nature Biotechnology.

[5]  M. Rieder,et al.  Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations , 2011, Nature Genetics.

[6]  Karen Patterson,et al.  1000 genomes: a world of variation. , 2011, Circulation research.

[7]  E. Lander Initial impact of the sequencing of the human genome , 2011, Nature.

[8]  Philip L. F. Johnson,et al.  Genetic history of an archaic hominin group from Denisova Cave in Siberia , 2010, Nature.

[9]  T. Jensen,et al.  Nuclear quality control of RNA polymerase II transcripts , 2010, Wiley interdisciplinary reviews. RNA.

[10]  Peter H. Sudmant,et al.  Diversity of Human Copy Number Variation and Multicopy Genes , 2010, Science.

[11]  E. Antman,et al.  Genetic variants in ABCB1 and CYP2C19 and cardiovascular outcomes after treatment with clopidogrel and prasugrel in the TRITON–TIMI 38 trial: a pharmacogenetic analysis , 2010, The Lancet.

[12]  Jake K. Byrnes,et al.  Genome-wide association study of copy number variation in 16,000 cases of eight common diseases and 3,000 shared controls , 2010, Nature.

[13]  Judy H. Cho,et al.  Finding the missing heritability of complex diseases , 2009, Nature.

[14]  Evan E. Eichler,et al.  Sequencing primate genomes: what have we learned? , 2009, Annual review of genomics and human genetics.

[15]  K. White,et al.  Genomic Antagonism between Retinoic Acid and Estrogen Signaling in Breast Cancer , 2009, Cell.

[16]  H. Okano,et al.  Generation of transgenic non-human primates with germline transmission , 2009, Nature.

[17]  B. Williams,et al.  Mapping and quantifying mammalian transcriptomes by RNA-Seq , 2008, Nature Methods.

[18]  Mark Gerstein,et al.  Genomics: Protein fossils live on as RNA , 2008, Nature.

[19]  Karl Mechtler,et al.  BAC TransgeneOmics: a high-throughput method for exploration of protein function in mammals , 2008, Nature Methods.

[20]  Joshua M. Korn,et al.  Mapping and sequencing of structural variation from eight human genomes , 2008, Nature.

[21]  S. Ross Nutritional genomic approaches to cancer prevention research. , 2007, Experimental oncology.

[22]  Philip M. Kim,et al.  Paired-End Mapping Reveals Extensive Structural Variation in the Human Genome , 2007, Science.

[23]  Zhaohui S. Qin,et al.  A second generation human haplotype map of over 3.1 million SNPs , 2007, Nature.

[24]  Sean B. Carroll,et al.  Gene duplication and the adaptive evolution of a classic genetic switch , 2007, Nature.

[25]  E. Louis Evolutionary genetics: Making the most of redundancy , 2007, Nature.

[26]  Fernando A. Villanea,et al.  Diet and the evolution of human amylase gene copy number variation , 2007, Nature Genetics.

[27]  T. Mikkelsen,et al.  Genome-wide maps of chromatin state in pluripotent and lineage-committed cells , 2007, Nature.

[28]  Allen D. Delaney,et al.  Genome-wide profiles of STAT1 DNA association using chromatin immunoprecipitation and massively parallel sequencing , 2007, Nature Methods.

[29]  A. Mortazavi,et al.  Genome-Wide Mapping of in Vivo Protein-DNA Interactions , 2007, Science.

[30]  T. Gingeras,et al.  Genome-wide transcription and the implications for genomic organization , 2007, Nature Reviews Genetics.

[31]  Elizabeth Pennisi,et al.  Working the (Gene Count) Numbers: Finally, a Firm Answer? , 2007, Science.

[32]  T. Mikkelsen,et al.  Systematic discovery of regulatory motifs in conserved regions of the human genome, including thousands of CTCF insulator sites , 2007, Proceedings of the National Academy of Sciences.

[33]  H. Willard,et al.  Primate comparative genomics: lemur biology and evolution. , 2007, Trends in genetics : TIG.

[34]  D. Conrad,et al.  Global variation in copy number in the human genome , 2006, Nature.

[35]  Alan M. Moses,et al.  In vivo enhancer analysis of human conserved non-coding sequences , 2006, Nature.

[36]  Feng Chen,et al.  Sequencing and Analysis of Neanderthal Genomic DNA , 2006, Science.

[37]  S. Pääbo,et al.  Accelerated Evolution of Conserved Noncoding Sequences in Humans , 2006, Science.

[38]  E. Eichler,et al.  Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome. , 2006, American journal of human genetics.

[39]  E. Ho,et al.  Sulforaphane inhibits histone deacetylase activity in BPH-1, LnCaP and PC-3 prostate epithelial cells. , 2006, Carcinogenesis.

[40]  R. Dashwood,et al.  Histone deacetylases as targets for dietary cancer preventive agents: lessons learned with butyrate, diallyl disulfide, and sulforaphane. , 2006, Current drug targets.

[41]  Jin-Wu Nam,et al.  Genomics of microRNA. , 2006, Trends in genetics : TIG.

[42]  P. Donnelly,et al.  A Fine-Scale Map of Recombination Rates and Hotspots Across the Human Genome , 2005, Science.

[43]  B. Lie,et al.  Celiac disease genetics: current concepts and practical applications. , 2005, Clinical gastroenterology and hepatology : the official clinical practice journal of the American Gastroenterological Association.

[44]  Shamil Sunyaev,et al.  Small fitness effect of mutations in highly conserved non-coding regions. , 2005, Human molecular genetics.

[45]  E. Eichler,et al.  Segmental duplications and copy-number variation in the human genome. , 2005, American journal of human genetics.

[46]  Deborah A Nickerson,et al.  Effect of VKORC1 haplotypes on transcriptional regulation and warfarin dose. , 2005, The New England journal of medicine.

[47]  E. Eichler,et al.  Fine-scale structural variation of the human genome , 2005, Nature Genetics.

[48]  Nathan M. Young,et al.  Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[49]  Jeroen Raes,et al.  Duplication and divergence: the evolution of new genes and old ideas. , 2004, Annual review of genetics.

[50]  L. Feuk,et al.  Detection of large-scale variation in the human genome , 2004, Nature Genetics.

[51]  Kenny Q. Ye,et al.  Large-Scale Copy Number Polymorphism in the Human Genome , 2004, Science.

[52]  S. Cawley,et al.  Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22. , 2004, Genome research.

[53]  Nancy F. Hansen,et al.  Comparative analyses of multi-species sequences from targeted genomic regions , 2003, Nature.

[54]  M. Olivier A haplotype map of the human genome. , 2003, Nature.

[55]  Daniel Pinkel,et al.  Large-scale variation among human and great ape genomes determined by array comparative genomic hybridization. , 2003, Genome research.

[56]  Colin N. Dewey,et al.  Initial sequencing and comparative analysis of the mouse genome. , 2002 .

[57]  William H. Majoros,et al.  A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome , 2002, Science.

[58]  V. Young 2001 W.O. Atwater Memorial Lecture and the 2001 ASNS President's Lecture: Human nutrient requirements: the challenge of the post-genome era. , 2002, The Journal of nutrition.

[59]  L. Appel,et al.  Angiotensinogen genotype and blood pressure response in the Dietary Approaches to Stop Hypertension (DASH) study , 2001, Journal of Hypertension.

[60]  D. Nickerson,et al.  Variation is the spice of life , 2001, Nature Genetics.

[61]  P. Tucker,et al.  Episodic evolution of pyrin in primates: human mutations recapitulate ancestral amino acid states , 2001, Nature Genetics.

[62]  J. V. Moran,et al.  Initial sequencing and analysis of the human genome. , 2001, Nature.

[63]  S. Pääbo,et al.  Great ape DNA sequences reveal a reduced diversity and an expansion in humans , 2001, Nature Genetics.

[64]  S. O’Brien,et al.  Molecular phylogenetics and the origins of placental mammals , 2001, Nature.

[65]  M. Lynch,et al.  The evolutionary fate and consequences of duplicate genes. , 2000, Science.

[66]  Aravinda Chakravarti,et al.  DNA duplication associated with Charcot-Marie-Tooth disease type 1A , 1991, Cell.

[67]  Wen-Hsiung Li,et al.  The molecular clock runs more slowly in man than in apes and monkeys , 1987, Nature.

[68]  D. Mccormick Sequence the Human Genome , 1986, Bio/Technology.

[69]  B. Lacarelle,et al.  DPD-based adaptive dosing of 5-FU in patients with head and neck cancer: impact on treatment efficacy and toxicity , 2010, Cancer Chemotherapy and Pharmacology.

[70]  M. Gerstein,et al.  RNA-Seq: a revolutionary tool for transcriptomics , 2009, Nature Reviews Genetics.

[71]  B. Wold,et al.  Sequence census methods for functional genomics , 2008, Nature Methods.

[72]  Pardis C Sabeti,et al.  Common deletion polymorphisms in the human genome , 2006, Nature Genetics.

[73]  International Human Genome Sequencing Consortium Finishing the euchromatic sequence of the human genome , 2004 .

[74]  L. Roberts The human genome. Controversial from the start. , 2001, Science.

[75]  A. Mighell,et al.  Vertebrate pseudogenes , 2000, FEBS letters.