Sound generation in zebrafish with Bio-Opto-Acoustics

Hearing is a crucial sense in underwater environments for communication, hunting, attracting mates, and detecting predators. However, the tools currently used to study hearing are limited, as they cannot controllably stimulate specific parts of the auditory system. To date, the contributions of hearing organs have been identified through lesion experiments that inactivate an organ, but this makes it difficult to gauge the specific stimuli to which each organ is sensitive, or the ways in which inputs from multiple organs are combined during perception. Here, we introduce Bio-Opto-Acoustic (BOA) stimulation, using optical forces to generate localized sound in vivo, and demonstrate stimulation of the auditory system of zebrafish larvae with unprecedented control. We use a rapidly oscillated optical trap to generate vibrations in individual otolith organs that are perceived as sound, while adjacent otoliths are either left unstimulated or similarly stimulated with a second optical laser trap. The resulting brain-wide neural activity is characterized using fluorescent calcium indicators, thus linking each otolith organ to its individual neuronal network in a way that would be impossible using traditional sound delivery methods. The results reveal integration and cooperation of the utricular and saccular otoliths, which were previously described as having separate biological functions, during hearing.

[1]  E. Pnevmatikakis,et al.  NoRMCorre: An online algorithm for piecewise rigid motion correction of calcium imaging data , 2017, Journal of Neuroscience Methods.

[2]  James E. Fitzgerald,et al.  Whole-brain activity mapping onto a zebrafish brain atlas , 2015, Nature Methods.

[3]  Nico Stuurman,et al.  Computer Control of Microscopes Using µManager , 2010, Current protocols in molecular biology.

[4]  Arthur Ashkin,et al.  Optical Levitation by Radiation Pressure , 1971 .

[5]  Maria V. Sanchez-Vives,et al.  Neuronal adaptation, novelty detection and regularity encoding in audition , 2014, Front. Syst. Neurosci..

[6]  F. Ladich,et al.  Diversity in Fish Auditory Systems: One of the Riddles of Sensory Biology , 2016, Front. Ecol. Evol..

[7]  B. Riley,et al.  Development of utricular otoliths, but not saccular otoliths, is necessary for vestibular function and survival in zebrafish. , 2000, Journal of neurobiology.

[8]  Florian Engert,et al.  The Tangential Nucleus Controls a Gravito-inertial Vestibulo-ocular Reflex , 2012, Current Biology.

[9]  C. A. Mccormick,et al.  Anatomy of the Central Auditory Pathways of Fish and Amphibians , 1999 .

[10]  Manuel Guizar-Sicairos,et al.  Efficient subpixel image registration algorithms. , 2008, Optics letters.

[11]  S. Romano,et al.  Sensorimotor Transformations in the Zebrafish Auditory System , 2019, Current Biology.

[12]  Ethan K. Scott,et al.  Diffuse light‐sheet microscopy for stripe‐free calcium imaging of neural populations , 2018, Journal of biophotonics.

[13]  Christopher Platt,et al.  Sound Detection Mechanisms and Capabilities of Teleost Fishes , 2003 .

[14]  Shaun P. Collin,et al.  Sensory Processing in Aquatic Environments , 2011, Springer New York.

[15]  Ethan K. Scott,et al.  Functional Profiles of Visual-, Auditory-, and Water Flow-Responsive Neurons in the Zebrafish Tectum , 2016, Current Biology.

[16]  Y. Oda,et al.  The role of ear stone size in hair cell acoustic sensory transduction , 2013, Scientific Reports.

[17]  M. Tekin,et al.  Hearing Assessment in Zebrafish During the First Week Postfertilization. , 2016, Zebrafish.

[18]  Kevin W Eliceiri,et al.  NIH Image to ImageJ: 25 years of image analysis , 2012, Nature Methods.

[19]  Richard R. Fay,et al.  Comparative Hearing: Fish and Amphibians , 1999, Springer Handbook of Auditory Research.

[20]  Itia A. Favre-Bulle,et al.  Brain-Wide Mapping of Water Flow Perception in Zebrafish , 2020, The Journal of Neuroscience.

[21]  A. Ghysen,et al.  Second-order projection from the posterior lateral line in the early zebrafish brain , 2006, Neural Development.

[22]  Ethan K. Scott,et al.  Optical trapping in vivo: theory, practice, and applications , 2019, Nanophotonics.

[23]  Ethan K. Scott,et al.  A profile of auditory‐responsive neurons in the larval zebrafish brain , 2017, The Journal of comparative neurology.

[24]  Halina Rubinsztein-Dunlop,et al.  Optical trapping of otoliths drives vestibular behaviours in larval zebrafish , 2017, Nature Communications.

[25]  David Pfau,et al.  Simultaneous Denoising, Deconvolution, and Demixing of Calcium Imaging Data , 2016, Neuron.

[26]  C. A. Mccormick HEARING AND LATERAL LINE | Auditory/Lateral Line CNS: Anatomy , 2011 .

[27]  R. Fay,et al.  Physiological evidence for binaural directional computations in the brainstem of the oyster toadfish, Opsanus tau (L.) , 2009, Journal of Experimental Biology.

[28]  S. Suresha,et al.  Mechanics of the human red blood cell deformed by optical tweezers , 2003 .

[29]  Arno Klein,et al.  A reproducible evaluation of ANTs similarity metric performance in brain image registration , 2011, NeuroImage.

[30]  R. Fay The goldfish ear codes the axis of acoustic particle motion in three dimensions. , 1984, Science.

[31]  Ethan K. Scott,et al.  Cellular-Resolution Imaging of Vestibular Processing across the Larval Zebrafish Brain , 2018, Current Biology.

[32]  A. Ashkin,et al.  History of optical trapping and manipulation of small-neutral particle, atoms, and molecules , 2000, IEEE Journal of Selected Topics in Quantum Electronics.

[33]  Henry Pinkard,et al.  Advanced methods of microscope control using μManager software. , 2014, Journal of biological methods.

[34]  T. Nicolson,et al.  Quantification of vestibular-induced eye movements in zebrafish larvae , 2010, BMC Neuroscience.

[35]  R. Fay,et al.  Structures and Functions of the Auditory Nervous System ofFishes , 2008 .

[36]  Benjamin Schmid,et al.  Rapid 3D light-sheet microscopy with a tunable lens. , 2013, Optics express.

[37]  Johannes E. Schindelin,et al.  Fiji: an open-source platform for biological-image analysis , 2012, Nature Methods.

[38]  Brian B. Avants,et al.  Symmetric diffeomorphic image registration with cross-correlation: Evaluating automated labeling of elderly and neurodegenerative brain , 2008, Medical Image Anal..

[39]  J. Fullard,et al.  The evolutionary biology of insect hearing. , 1993, Trends in ecology & evolution.

[40]  M W Berns,et al.  Use of a laser-induced optical force trap to study chromosome movement on the mitotic spindle. , 1989, Proceedings of the National Academy of Sciences of the United States of America.

[41]  A. Rees,et al.  Sensory maps: Aligning maps of visual and auditory space , 1996, Current Biology.

[42]  Zhongmin Lu,et al.  Early Development of Hearing in Zebrafish , 2013, Journal of the Association for Research in Otolaryngology.

[43]  Geoffrey J. Goodhill,et al.  Altered brain-wide auditory networks in fmr1-mutant larval zebrafish , 2019, bioRxiv.

[44]  Stefan R. Pulver,et al.  Ultra-sensitive fluorescent proteins for imaging neuronal activity , 2013, Nature.

[45]  Ronald N. Miles,et al.  DESIGN OF A BIOMIMETIC DIRECTIONAL MICROPHONE DIAPHRAGM , 2000 .

[46]  B. Budelmann,et al.  Hearing in Crustacea , 1992 .

[47]  Martha W. Bagnall,et al.  Delayed Otolith Development Does Not Impair Vestibular Circuit Formation in Zebrafish , 2017, Journal of the Association for Research in Otolaryngology.

[48]  N. Cant,et al.  Overview of Auditory Projection Pathways and Intrinsic Microcircuits , 2018 .

[49]  A. Ashkin,et al.  Optical trapping and manipulation of single cells using infrared laser beams , 1987, Nature.

[50]  Sean B. Andersson,et al.  A biomimetic apparatus for sound-source localization , 2003, 42nd IEEE International Conference on Decision and Control (IEEE Cat. No.03CH37475).

[51]  T. Mueller What is the Thalamus in Zebrafish? , 2012, Front. Neurosci..

[52]  Gilles Vanwalleghem,et al.  Brain-Wide Mapping of Water Flow Perception in Zebrafish , 2020, The Journal of Neuroscience.

[53]  Pengcheng Zhou,et al.  CaImAn an open source tool for scalable calcium imaging data analysis , 2019, eLife.

[54]  Hironobu Ito,et al.  Fiber connections of the central nucleus of semicircular torus in cyprinids , 2005, The Journal of comparative neurology.