Snf1 Protein Kinase Regulates Adr1 Binding to Chromatin but Not Transcription Activation*

The yeast transcriptional activator Adr1 controls the expression of genes required for ethanol, glycerol, and fatty acid utilization. We show that Adr1 acts directly on the promoters ofADH2, ACS1, GUT1, CTA1, and POT1 using chromatin immunoprecipitation assays. The yeast homolog of the AMP-activated protein kinase, Snf1, promotes Adr1 chromatin binding in the absence of glucose, and the protein phosphatase complex, Glc7·Reg1, represses its binding in the presence of glucose. A post-translational process is implicated in the regulation of Adr1 binding activity. Chromatin binding by Adr1 is not the only step in ADH2 transcription that is regulated by glucose repression. Adr1 can bind to chromatin in repressed conditions in the presence of hyperacetylated histones. To study steps subsequent to promoter binding we utilized miniAdr1 transcription factors to characterize Adr1-dependent transcription in vitro. Yeast nuclear extracts prepared from glucose-repressed and glucose-derepressed cells are equally capable of supporting miniAdr1-dependent transcription and pre-initiation complex formation. Nuclear extracts prepared from a snf1 mutant support miniAdr1-dependent transcription but are partially defective in the formation of pre-initiation complexes with Mediator components being particularly depleted. We conclude that Snf1 regulates Adr1-dependent transcription primarily at the level of chromatin binding.

[1]  H J Schüller,et al.  Transcriptional control of the yeast acetyl‐CoA synthetase gene, ACS1, by the positive regulators CAT8 and ADR1 and the pleiotropic repressor UME6 , 1997, Molecular microbiology.

[2]  E. Young,et al.  Synergistic activation of ADH2 expression is sensitive to upstream activation sequence 2 (UAS2) orientation, copy number and UAS1-UAS2 helical phasing , 1995, Molecular and cellular biology.

[3]  Valmik K. Vyas,et al.  Interaction of the Srb10 Kinase with Sip4, a Transcriptional Activator of Gluconeogenic Genes in Saccharomyces cerevisiae , 2001, Molecular and Cellular Biology.

[4]  K. M. Dombek,et al.  ADH2 expression is repressed by REG1 independently of mutations that alter the phosphorylation of the yeast transcription factor ADR1 , 1993, Molecular and cellular biology.

[5]  P. Komarnitsky,et al.  ADR1-Mediated Transcriptional Activation Requires the Presence of an Intact TFIID Complex , 1998, Molecular and Cellular Biology.

[6]  S. Berger,et al.  Snf1--a Histone Kinase That Works in Concert with the Histone Acetyltransferase Gcn5 to Regulate Transcription , 2001, Science.

[7]  M. Ciriacy,et al.  Isolation and characterization of further Cis- and Trans-acting regulatory elements involved in the synthesis of glucose-repressible alcohol dehydrogenase (ADHII) in Saccharomyces cerevisiae , 1979, Molecular and General Genetics MGG.

[8]  K. Walther,et al.  Adr1 and Cat8 synergistically activate the glucose-regulated alcohol dehydrogenase gene ADH2 of the yeast Saccharomyces cerevisiae. , 2001, Microbiology.

[9]  M. Johnston,et al.  Regulated nuclear translocation of the Mig1 glucose repressor. , 1997, Molecular biology of the cell.

[10]  C. Denis,et al.  The CCR1 (SNF1) and SCH9 protein kinases act independently of cAMP-dependent protein kinase and the transcriptional activator ADR1 in controlling yeast ADH2 expression , 1991, Molecular and General Genetics MGG.

[11]  Kenneth M. Dombek,et al.  Functional Analysis of the Yeast Glc7-Binding Protein Reg1 Identifies a Protein Phosphatase Type 1-Binding Motif as Essential for Repression of ADH2 Expression , 1999, Molecular and Cellular Biology.

[12]  W. Cook,et al.  Identification of three genes required for the glucose-dependent transciption of the yeast transcriptional activator ADR1 , 1993, Current Genetics.

[13]  J. Hiltunen,et al.  Saccharomyces cerevisiae Adr1p Governs Fatty Acid β-Oxidation and Peroxisome Proliferation by RegulatingPOX1 and PEX11 * , 2001, The Journal of Biological Chemistry.

[14]  H. Blumberg,et al.  Regulation of expression and activity of the yeast transcription factor ADR1 , 1988, Molecular and cellular biology.

[15]  B. Chiappini,et al.  In Vivo Changes of Nucleosome Positioning in the Pretranscription State* , 2002, The Journal of Biological Chemistry.

[16]  P. Pavlík,et al.  A C-terminal region of the Saccharomyces cerevisiae transcription factor ADR1 plays an important role in the regulation of peroxisome proliferation by fatty acids , 1995, Molecular and General Genetics MGG.

[17]  J. Lopes,et al.  Expression of GUT1, which encodes glycerol kinase in Saccharomyces cerevisiae, is controlled by the positive regulators Adr1p, Ino2p and Ino4p and the negative regulator Opi1p in a carbon source-dependent fashion. , 1999, Nucleic acids research.

[18]  B. Kemp,et al.  ADR1c mutations enhance the ability of ADR1 to activate transcription by a mechanism that is independent of effects on cyclic AMP-dependent protein kinase phosphorylation of Ser-230 , 1992, Molecular and cellular biology.

[19]  C. Denis,et al.  Cyclic AMP-dependent protein kinase phosphorylates and inactivates the yeast transcriptional activator ADR1 , 1989, Cell.

[20]  K. M. Dombek,et al.  Cyclic AMP-dependent protein kinase inhibits ADH2 expression in part by decreasing expression of the transcription factor gene ADR1 , 1997, Molecular and cellular biology.

[21]  W. Cook,et al.  Dissection of the ADR1 protein reveals multiple, functionally redundant activation domains interspersed with inhibitory regions: evidence for a repressor binding to the ADR1c region , 1994, Molecular and cellular biology.

[22]  L. Guarente Yeast promoters and lacZ fusions designed to study expression of cloned genes in yeast. , 1983, Methods in enzymology.

[23]  J. C. Igual,et al.  ADR1 and SNF1 mediate different mechanisms in transcriptional regulation of yeast POT1 gene. , 1994, Biochemical and biophysical research communications.

[24]  C. Denis,et al.  Factors Affecting Saccharomyces cerevisiae ADH2Chromatin Remodeling and Transcription* , 1997, The Journal of Biological Chemistry.

[25]  Rachel E. Klevit,et al.  A folding transition and novel zinc finger accessory domain in the transcription factor ADR1 , 1999, Nature Structural Biology.

[26]  M. Carlson,et al.  A regulatory shortcut between the Snf1 protein kinase and RNA polymerase II holoenzyme. , 2000, Proceedings of the National Academy of Sciences of the United States of America.

[27]  E. Young,et al.  cAMP-dependent phosphorylation and inactivation of yeast transcription factor ADR1 does not affect DNA binding. , 1990, Proceedings of the National Academy of Sciences of the United States of America.

[28]  Y. Liu,et al.  Yeast Nuclear Extract Contains Two Major Forms of RNA Polymerase II Mediator Complexes* , 2001, Journal of Biological Chemistry.

[29]  J. Gancedo Yeast Carbon Catabolite Repression , 1998, Microbiology and Molecular Biology Reviews.

[30]  R. Schiestl,et al.  Improved method for high efficiency transformation of intact yeast cells. , 1992, Nucleic acids research.

[31]  K. M. Dombek,et al.  Characterization of a p53-related Activation Domain in Adr1p That Is Sufficient for ADR1-dependent Gene Expression* , 1998, The Journal of Biological Chemistry.

[32]  L. Verdone,et al.  Chromatin remodeling during Saccharomyces cerevisiae ADH2 gene activation , 1996, Molecular and cellular biology.

[33]  M. Carlson,et al.  Glucose repression in yeast. , 1999, Current opinion in microbiology.

[34]  Steven Hahn,et al.  A transcription reinitiation intermediate that is stabilized by activator , 2000, Nature.

[35]  P. Komarnitsky,et al.  ADR1 Activation Domains Contact the Histone Acetyltransferase GCN5 and the Core Transcriptional Factor TFIIB* , 1996, The Journal of Biological Chemistry.

[36]  K. Entian,et al.  CAT8, a new zinc cluster-encoding gene necessary for derepression of gluconeogenic enzymes in the yeast Saccharomyces cerevisiae , 1995, Molecular and cellular biology.

[37]  M. Grunstein,et al.  Mapping DNA interaction sites of chromosomal proteins using immunoprecipitation and polymerase chain reaction. , 1999, Methods in enzymology.

[38]  K. Entian,et al.  Glucose derepression of gluconeogenic enzymes in Saccharomyces cerevisiae correlates with phosphorylation of the gene activator Cat8p , 1997, Molecular and cellular biology.

[39]  M. Grunstein,et al.  Hyperacetylation of chromatin at the ADH2 promoter allows Adr1 to bind in repressed conditions , 2002, The EMBO journal.

[40]  Timothy A. J. Haystead,et al.  Regulatory Interactions between the Reg1-Glc7 Protein Phosphatase and the Snf1 Protein Kinase , 2000, Molecular and Cellular Biology.

[41]  K. M. Dombek,et al.  Post-translational Regulation of Adr1 Activity Is Mediated by Its DNA Binding Domain* , 1999, The Journal of Biological Chemistry.

[42]  G. Adam,et al.  Control of peroxisome proliferation in Saccharomyces cerevisiae by ADR1, SNF1 (CAT1, CCR1) and SNF4 (CAT3) , 1992, Yeast.

[43]  L. Karnitz,et al.  Identification and characterization of three genes that affect expression of ADH2 in Saccharomyces cerevisiae. , 1992, Genetics.

[44]  M. Perrot,et al.  The Transcriptional Activator Cat8p Provides a Major Contribution to the Reprogramming of Carbon Metabolism during the Diauxic Shift inSaccharomyces cerevisiae * , 2001, The Journal of Biological Chemistry.

[45]  E T Young,et al.  An accessory DNA binding motif in the zinc finger protein Adr1 assists stable binding to DNA and can be replaced by a third finger. , 2000, Biochemistry.

[46]  C. Denis The effects of ADR1 and CCR1 gene dosage on the regulation of the glucose-repressible alcohol dehydrogenase from Saccharomyces cerevisiae , 1987, Molecular and General Genetics MGG.

[47]  Ellson Y. Chen,et al.  Overview of manual and automated DNA sequencing by the dideoxy chain termination method , 1991 .

[48]  H. Ruis,et al.  Adr1p-dependent regulation of the oleic acid-inducible yeast gene SPS19 encoding the peroxisomal beta-oxidation auxiliary enzyme 2,4-dienoyl-CoA reductase. , 2000, Molecular cell biology research communications : MCBRC.

[49]  J. Yu,et al.  Adjacent upstream activation sequence elements synergistically regulate transcription of ADH2 in Saccharomyces cerevisiae , 1989, Molecular and cellular biology.

[50]  W. Cook,et al.  Glucose repression of the yeast ADH2 gene occurs through multiple mechanisms, including control of the protein synthesis of its transcriptional activator, ADR1. , 1992, Molecular and cellular biology.

[51]  J. Ranish,et al.  Intermediates in formation and activity of the RNA polymerase II preinitiation complex: holoenzyme recruitment and a postrecruitment role for the TATA box and TFIIB. , 1999, Genes & development.

[52]  E. Young,et al.  Transcription of the ADH2 gene in Saccharomyces cerevisiae is limited by positive factors that bind competitively to its intact promoter region on multicopy plasmids , 1987, Molecular and Cellular Biology.

[53]  M. Carlson,et al.  Sip4, a Snf1 kinase‐dependent transcriptional activator, binds to the carbon source‐responsive element of gluconeogenic genes , 1998, The EMBO journal.

[54]  P. Brown,et al.  Exploring the metabolic and genetic control of gene expression on a genomic scale. , 1997, Science.